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. 2021 Sep 22;16(9):e0257712. doi: 10.1371/journal.pone.0257712

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields

Élisée Emmanuel Dabré 1,*, Soon-Jae Lee 2, Mohamed Hijri 1,3, Colin Favret 1
Editor: Alejandro Carlos Costamagna4
PMCID: PMC8457447  PMID: 34551014

Abstract

The use of belowground microorganisms in agriculture, with the aim to stimulate plant growth and improve crop yields, has recently gained interest. However, few studies have examined the effects of microorganism inoculation on higher trophic levels in natural conditions. We examined how the diversity of phytophagous insects and their natural enemies responded to the field-inoculation of soybean with a model arbuscular mycorrhizal fungus (AMF), Rhizophagus irregularis, combined with a nitrogen-fixing bacterium, Bradyrhizobium japonicum, and a plant growth-promoting bacterium, Bacillus pumilus. We also investigate if the absence or presence of potassium fertilizer can affect this interaction. We found an increase in the abundance of piercing-sucking insects with the triple inoculant irrespective of potassium treatment, whereas there were no differences among treatments for other insect groups. A decrease in the abundance of the soybean aphid, Aphis glycines, with the double inoculant Rhizophagus + Bradyrhizobium was observed in potassium enriched plots and in the abundance of Empoasca spp. with potassium treatment independent of inoculation type. Although it was not possible to discriminate the mycorrhization realized by inoculum from that of the indigenous AMF in the field, we confirmed global negative effects of overall mycorrhizal colonization on the abundance of phytophagous piercing-sucking insects, phytophagous chewing insects, and the alpha diversity of phytophagous insects. In perspective, the use of AMF/Rhizobacteria inoculants in the field should focus on the identity and performance of strains to better understand their impact on insects.

1. Introduction

Plant beneficial soil microbes, including mycorrhizal fungi and plant growth-promoting rhizobacteria (PGPR), have long been studied and applied for their positive effects on plant growth, nutrient mobilization, and agricultural product yield [1,2]. Arbuscular mycorrhizal fungi (AMF), of the phylum Glomeromycota [3,4], form one of the most widespread symbiotic associations with plant roots and constitute an important functional group in terrestrial ecosystems [5]. They are obligate biotrophs that form symbiotic associations with more than 80% of vascular plant species [6,7]. Whereas the autotrophic plant delivers photoassimilates to the fungus, the fungal partner, in return, improves water and nutrient uptake, especially of phosphorus [8].

Plant growth-promoting rhizobacteria are also one of the major microbial groups that interact with plants. There are those that are obligatory symbiotic with the plants, for example rhizobia and legumes, and those that are free-living near, on, or even within the plant organs, these latter known as endophytes [9]. Rhizobia are a polyphyletic group of Gram-negative bacteria that are associated with most legumes by forming root nodules and that facilitate plant growth by fixing nitrogen [10]. Free-living PGPR can promote plant growth directly or indirectly [11]. Direct effects of these bacterial associates are related to production of plant growth regulators (phytohormones, antioxidants and enzymes) or improvements in nutrient uptake [12]. Indirect effects are related to the production of metabolites, such as antibiotics or siderophores that decrease the growth of phytopathogens and other deleterious organisms [13,14].

Soybean, Glycine max (L.) Merr., is the most important agricultural legume for oil and protein production [15]. Legumes can form tripartite symbiotic associations with nodule-inducing rhizobia and AMF, that may benefit growth, development, and the uptake of both phosphorous and nitrogen [1619]. It was shown in soybean and common bean (Phaseolus vulgaris L.) that the co-inoculation of AMF and rhizobium improved production, efficiency of photosynthesis, nodulation and, especially, an increase in both phosphorus and nitrogen concentrations [20,21]. In addition, some studies showed that co-inoculation of soybean with PGPR of Bacillus species and the rhizobia Bradyrhizobium japonicum, increases nodulation and nitrogen fixation [9,22].

Chemical inputs in the form of nitrogen, phosphorus and potassium fertilizers are used to increase agricultural productivity. Their use generally increases potentially pestiferous herbivore populations [23], although in some cases they can reduce the density of these insects [24]. For example, the use of potassium fertilizer in soybean reduces aphid populations by limiting the availability of amino acids [25]. In sustainable, low-synthetic-input agricultural cropping systems, the use of microorganisms as inoculants, in combination with certain fertilizers, may help maintain soil fertility and plant health [17]. As a consequence of the symbiosis, these microorganisms can change host plant feature for insect herbivores through their impact on plant nutritional quality and/or by priming effects that lead to enhanced inducible and constitutive plant defences [26,27]. Previous studies have shown that AMF-induced changes in plant traits positively or negatively affect the individual performance of aboveground phytophagous insects [26,28,29]. At the community level, AMF positively affected piercing-sucking insects and specialist chewing insects, but generalist chewers are negatively affected [26,30]. As with AMF, rhizobacteria can also influence plant–herbivore interactions, but the consequences depend on the identity of the plant and insect species and the degree of insect specialism [31,32]. For example, in a garden experiment, a study on rhizobacteria-insect communities showed that rhizobia affected the abundance of chewing insects, while no effect was observed with the sap feeders (piercing-sucking insects) [33].

Little is known about the effects of AMF and PGPR (and/or Rhizobia) on foliage-feeding insects in natural agricultural conditions [32]. Most studies to date have been undertaken under controlled conditions in the laboratory or green-house [27,28,33], and by using methods to eliminate indigenous microorganisms from experimental fields [34,35]. Also, microorganism-plant-insect interactions impact not just the herbivores, but also higher trophic levels such as their natural enemies [36,37].

We examined the effects of a combined inoculation of the AMF Rhizophagus irregularis (synonyms: Rhizoglomus irregulare, Glomus irregulare, G. intraradices) isolate DAOM 197198 (PTB 297), the Rhizobia Bradyrhizobium japonicum strain PTB 162, the PGPR Bacillus pumilus strain PTB180 and potassium fertilizer on the phytophagous insects of soybean and their natural enemies under field cropping conditions.

As the ecological consequences of inoculants in the field are poorly understood and may not be easily predicted [38], in this study we sought to anticipate possible undesired effects of the inoculation of AMF and rhizobacteria on the communities of phytophagous insects. The co-inoculation of the three microorganisms can affect the host plant growth, development, and nutritional status directly and indirectly by the interaction with local microbial community. Therefore, we hypothesized that: 1) the inoculation of AMF and rhizobacteria will increase the abundance and species richness of functional groups such as piercing-sucking and chewing insects of host plant; and that 2) the abundance and richness of these insects will be correlated with the degree of mycorrhizal root colonization. To test these two hypotheses, we conducted an experiment on two agricultural fields of soybean.

2. Materials and methods

2.1. Living material

Seeds of the soybean cultivar AURIGA and microorganism inoculants were supplied by Premier Tech (Rivière-du-Loup, Quebec, Canada) as follows:

AGTIV®SOYBEAN powder based on a mixture of R. irregularis isolate DAOM197198 (PTB 297) at a dose of 2750 viable spores per gram of product and B. japonicum PTB 162 at a dose of 2.5x109 cells per gram of product. Another inoculant consisted of mixture of AGTIV® SOYBEAN and Bacillus pumilus strain PTB180.

2.2. Experimental design

The study was conducted from May to September 2017, in two fields located at Varennes (45.693˚ N, 73.365˚ W) and Saint-Simon (45.681˚ N, 72.856˚ W), Quebec, Canada. The climate type at both sites, approximately 35 km from each other, is temperate-cold. The growing season typically lasts 5 months, from May to September, with July being the hottest month and August being the wettest. At Varennes, the average temperature is 20.1°C with maximum of 24.8°C and minimum of 15.4°C and the average precipitation is 69.9 mm. At Saint-Simon, the warmest month recorded an average temperature of 19.8°C with maximum of 24.8°C and minimum of 14.7°C and an average rainfall of 74.18 mm (See https://climat.meteo.gc.ca/historical_data/search_historic_data_f.html). Sowing took place at Varennes and Saint-Simon on May 20 and 25, respectively. Seeds were precoated with substrate containing inoculants in the seed drill before sowing with an application dose of 300g per hectare. The experiment at each site consisted of a factorial design of three inoculant treatments (control [C], double inoculation with R. irregularis and B. japonicum [MR] and triple inoculation with the addition of B. pumilus to the double inoculant, [MRB]) combined with two treatments either with or without potassium fertilizer ([K-] and [K+]). So, we had 3 treatments per each potassium level/block replicated 8 times, for a total of 48 plots per site. This potassium fertilizer (NPK [0–0–60]) of 80 units was applied at a dose of 240 g per plot at Varennes and 175 g per plot at Saint-Simon following soil analysis one day before sowing.

At Varennes, each plot measured 6 m x 3 m, contained 4 rows of seedlings with 75 cm between adjacent rows, and an 8 m spacer separated each block. The previous crop had been wheat in this site and soybeans were grown alongside the trial during the growing season. On June 25, 2017, two herbicide treatments, Reflex® (Fomesafen) at a dose of 1L/ha and Pursuit® (Imazethapyr) at a dose of 0.312 L/ha were applied before the insect sampling. Also, a foliar Crop Booster (15-3-6 foliar spray fertilizer) was applied at 2 L /ha.

At Saint-Simon, each plot measured 5 m x 1.44 m, with row spacing of 36 cm, and a 2 m space separated each block. The previous crop had been maize, and soybeans were also grown alongside the trial. At this site, three herbicides were applied just before sowing: Dual II Magnum (S-metolachlor & R-enantiomer) at 1.75 L/ha, Pursuit® (Imazethapyr) at a dose of 0.312 L/ha and FirstRate (cloransulam-methyl) at a dose of 20,8 G/ha. Despite the use of herbicide, we noticed the growth of weeds at the early flowering stage (R1) on most of the 4 rows going towards a water canal located at 15 m.

The two sites were test sites of Premier Tech, which provided us the seeds and inoculants and they belong to Sollio Cooperative Group (formerly called La Coop fédérée), a cooperative of agricultural producers in Québec.

2.3. Insect trapping and sampling

We sampled insects at Varennes and Saint-Simon on July 4 and 11, respectively (active growth/early flowering stage). Three sampling methods were: yellow pan traps, pitfall traps, and D-Vac aspiration [39]: when the leaf-blower motor is activated, it rotates a fan that creates a flow of air through the tube to draw insects into a collecting bag attached to the end of a 1 m PVC tube.

In each plot, two pan traps and two pitfalls [40] were placed 3 to 5 m apart on the ground within the two center rows so that each trap was approximately 1.5 m from the edge of the plot and 2.25 m from another pan or pitfall in the adjacent plot. Each trap was filled approximately ¾ with water and a few drops of unscented dishwashing detergent to reduce the surface tension [41]. Traps were installed at 9:00 am the day before and recovered 24 hours later. The D-Vac sampling was carried out on the central rows of each plot for 1 minute before the traps were collected. Following each sampling, insects were either kept in the freezer [42], or stored in polyethylene bags (Whirl-Pak®) in 75% ethanol until identification [41].

2.4. Arbuscular mycorrhizal colonization measurement

Two individual plants with their roots and rhizosphere soils from the two central rows in each plot were uprooted randomly six weeks after sowing [43]. Roots were kept in polyethylene bags (Whirl-Pak®) with 50% ethanol and their cleaning was done according to the method described by Antunes et al. 2006 [44]. To estimate the mycorrhizal colonization rate, all the root samples were heated in 10% (wt/vol) KOH solution at 70˚ C for 1 hour before staining with a 5% solution of black ink (Sheaffer®) in 5% acetic acid solution for 20 min at 70˚ C. Roots were then cleaned for 40 min with acidified water (a few drops of 5% acetic acid in water) to remove excess of ink. These roots were mounted on slides and observed under an optical microscope at 100x magnification. The percentage of the root colonized was measured on structures like hyphae, vesicles and AMF arbuscules with the grid-line intersect method [45,46]. We assume that at plot level, each plant is more or less equally influenced by native fungi in its close environment. In this case, the measured mycorrhizal colonization rate is representative of the plot.

2.5. Insect identification

We sorted the insect specimens to order and family, when possible, and then into operational taxonomic units (OTUs) or morphospecies [47]. For this purpose, each OTU was photographed and several morphological characters were used for their characterization [47,48]. For Microhymenoptera, we favored the wing pattern, shape and length of antennae, whereas in Diptera we relied more on the wing pattern. For aphids (Hemiptera: Aphididae), we focused on the size and shape of the cornicles, the cauda, and sclerotization of the body. We identified the soybean aphid, Aphis glycines Matsumura (Hemiptera: Aphididae) [49], and Empoasca spp. (Hemiptera: Cicadellidae) [50], although this latter was probably mostly Empoasca fabae (Harris). Voucher material is deposited at the University of Montreal’s Ouellet-Robert Entomological Collection.

To evaluate insect abundance and species richness, we focused on insects that may have a direct and indirect impact on the crop, namely phytophagous insects and their natural enemies. The insects were then classified into functional groups based on their feeding mode (for phytophagous insects, piercing-sucking and chewing insects) and mode of life (for natural enemies) [51] (Table 1).

Table 1. Number of specimens and operational taxonomic units (OTUs) of insect functional groups depending on the type of trap, D-Vac, pan trap (PT), and pitfall (PF), used during sampling in soybean fields.

Functional groups Order No. OTUs Varennes Saint-Simon Total
D-Vac PT PF D-Vac PT PF
Aphis glycines Hemiptera 1 57 0 17 213 0 1 288
Other aphids Hemiptera 12 14 263 0 27 125 8 437
Aphids subtotal 13 71 263 17 240 125 9 725
Empoasca spp. Hemiptera 1 450 19 5 124 1 3 602
Other piercing-sucking insects Hemiptera, Thysanoptera, Coleoptera 6 10 236 14 7 100 0 367
Piercing-sucking insects subtotal 20 531 518 36 371 226 12 1694
Chewing insects Coleoptera 16 40 181 22 7 35 16 301
Phytophagous insects subtotal 36 571 699 58 378 261 28 1995
Natural enemies of aphids Coleoptera, Diptera, Hemiptera, Hymenoptera 26 100 127 500 74 45 512 1358
Natural enemies of other insects Hymenoptera 47 15 210 0 11 245 0 481
Natural enemies subtotal 73 115 337 500 85 290 512 1839
Other insects Coleoptera, Diptera, Hemiptera, Hymenoptera, Orthoptera 41 357 787 302 515 596 251 2808
Total 150 1043 1823 860 978 1147 791 6642

2.6. Statistical analysis

All analyses were performed with R (version 3.5.3) (R Core Team 2019). The Shannon index (⍺-diversity), that relates the number and relative abundance of species in each elementary plot, was calculated using the formula:

H=i=1sniNlnniN

Where H’ = Shannon’s index of ⍺ diversity; s = total number of species; ni = number of individuals of species i; N = total number of individuals of all species; ln = the natural logarithm [52]. To examine the effects of inoculants and potassium on crop yield, mycorrhizal colonization rate of roots, abundance (total number of specimens per OTU), and alpha diversity (Shannon index) per treatment for each functional group of insects, we used a linear mixed models (LMMs) with the lmer function in the package lmerTest [53].

Inoculant treatments (C, MR, MRB) and potassium ([K-], [K+]) were considered as fixed effects, while the block as the random effect, and they were crossed in the model. Other parameters (yield, abundance, Shannon index, mycorrhizal colonization rate) were the response variables used individually in the LMMs. The normality of the distribution and the homogeneity of the variance were tested by the Shapiro-Wilk and Levene’s tests, respectively. When non-normal distribution and heteroscedasticity were observed, we used the function "sqrt" (square root) or "log" to transform the variable response before modeling [54]. When the model is established, we applied the function "Anova" in the package "car" to test the difference among treatments. When significant differences were observed, post hoc test was applied with Tukey’s honest significant difference (HSD) in package "mutlcomp".

To assess the influence of AMF colonization, we evaluated the correlation between various insect abundances or alpha diversity parameters and the mycorrhizal colonization measured in different plots. As the data did not meet the assumptions of normal distribution, we applied Kendall correlation analysis.

3. Results

3.1. Effects of AMF and rhizobacteria inoculation on crop yield and mycorrhizal colonization

Inoculation and fertilizer had no effects on root mycorrhizal colonization and grain yield at Varennes and Saint-Simon (S1 Table). There were no significant differences between inoculant treatments (C, MR, MRB) for AMF colonization of roots or crop yield irrespective of potassium (Table 2). We did not directly measure the effect of the inoculation on the bacterial community or on the taxonomic diversity of the microbial community in general.

Table 2. Arbuscular mycorrhizal fungi root colonization and yield of soybean at different levels of inoculation irrespective of potassium fertilizer application at Varennes and Saint-Simon.

Site Plant parameters Inoculant treatments P
C MR MRB
Varennes AMF root colonization (%) 43.8±2.82 40.6±3.34 39.3±4.04 ns
Yield (kg/ha) 3060±35.86 3038±39.75 3016±35.66 ns
Saint-Simon AMF root colonization (%) 60.2±4.63 61.3±4.09 64.2±4.02 ns
Yield (kg/ha) 3075±84.08 3151±61.13 3162±71.32 ns

C: Control; MR: Mycorrhizae+Rhizobium; MRB: Mycorrhizae+Rhizobium+Bacillus. Values represent means ± SE of 8 replicates (n = 48 plots) in each site.

ns: Not significant.

3.2. Observed insect abundance and species richness among different inoculation treatments

A total of 6642 insects were collected and identified by morphology. These were sorted to 150 OTUs belonging to 6 orders of insects (Table 1). Among these specimens, 1995 were classified as phytophagous (1694 piercing-sucking and 301 chewing insects), 1839 as their natural enemies including 1358 as potential natural enemies of aphids.

No interaction was found between the inoculant treatments and the potassium at Varennes (S2 Table). There was a significant difference in the abundance of piercing-sucking insects by inoculation treatments irrespective of potassium application (F2.28 = 4.12, P = 0.026, S2 Table). The average abundance of piercing-sucking insects was higher with the inoculant [MRB] (26.1) relative to the control [C] (18.9), while the number of insects with the inoculant [MR] (22.8) was not different from that of other treatments (S3 Table). There were no differences among inoculant treatments for the abundance of other insect groups (chewing insects, aphids without A. glycines, aphids’ natural enemies, A. glycines and Empoasca spp.) (S2 Table).

Similarly, there were no differences among inoculants treatments for the insect groups at Saint-Simon, except A. glycines and Empoasca spp. (S2 Table). The significant interaction between inoculants and potassium was observed with the abundance of A. glycines (F2.21 = 6.69, P = 0.006, S2 Table, Fig 1). In potassium-fertilized [K+] plots (blue boxplots), there was a significant difference between the control [C] plots, which had higher numbers of aphids relative to the inoculated [MR] plots, while aphid numbers in inoculated [MRB] plots were not different than the other treatments (Fig 1B). However, in the unfertilized [K-] plots (pink boxplots), the inoculations did not have any significant effect on the abundance of this aphid species (Fig 1A): all three inoculations yielded similar results. Independent of inoculant, Empoasca spp. exhibited a difference in the presence of potassium (F1.35 = 5.53, P = 0.024, S2 Table). The plots without potassium [K-] had higher number of leafhoppers than the potassium-fertilized [K+] plots (S3 Table).

Fig 1. Boxplots of Aphis glycines abundance per plant in each inoculant treatment (Control: C; Mycorrhizae+Rhizobium: MR; Mycorrhizae+Rhizobium+Bacillus: MRB) at Saint-Simon.

Fig 1

(A) with the application of potassium and (B) without the application of potassium. Letters above indicate significant differences among treatments based on Tukey’s honest significant difference (HSD) test after Linear mixed effect model (LMM) follow by ANOVA (P<0.05). Triangle dots inside the boxplots represent the means.

We examined the effect of the inoculants on the diversity of the second trophic level (i.e. the 36 phytophagous insect OTUs). As with the previous analyses on the abundance of insect groups, the various inoculant and fertilizer treatments showed no effect on phytophagous insect diversity, as measured with the Shannon index, neither at Varennes (F2,35 = 0.66, P = 0.50) nor at Saint-Simon (F2,21 = 0.57, P = 0.57) (S2 Table).

3.3. Correlation between AMF colonization and abundance/richness of insects

Even though it is not possible to discriminate the root colonization realized with the inoculum from that caused by indigenous AMF, the variation in the degree of mycorrhizal root colonization irrespective of inoculation treatments allowed us to test the effect of mycorrhization on insect abundance and diversity, independent of inoculant treatment. The abundance of piercing-sucking insects, chewing insects, as well as their alpha diversity, were all negatively correlated with the level of mycorrhizal colonization (as measured per plot) at Varennes, whereas no correlation was observed at Saint-Simon (Figs 24, S4 Table). No correlation was observed at either site between the level of mycorrhizal colonization and the abundance of natural enemies of aphids, A. glycines, aphids excluding A. glycines, or Empoasca spp. (S4 Table).

Fig 2. Correlation between AMF colonization rate and piercing-sucking insect abundance at Varennes and Saint-Simon.

Fig 2

Negative correlation at Varennes (V; blue dots) (Kendall tau: -0.24; P = 0.016). No correlation at Saint-Simon (S; pink dots) (Kendall tau: 0.08; P = 0.43).

Fig 4. Correlation between AMF colonization rate and Shannon index of phytophagous insects (piercing-sucking and chewing) at Varennes and Saint-Simon.

Fig 4

Negative correlation at Varennes (V; blue dots) (Kendall tau: -0.26; P = 0.008). No correlation at Saint-Simon (S; pink dots) (Kendall tau: 0.15; P = 0.11).

Fig 3. Correlation between AMF colonization rate and chewing insect abundance at Varennes and Saint-Simon.

Fig 3

Negative correlation at Varennes (V; blue dots) (Kendall tau: -0.20; P = 0.052). No correlation at Saint-Simon (S; pink dots) (Kendall tau: 0.075; P = 0.50).

4. Discussion

The inoculation with R. irregularis, B. japonicum and B. pumilus, irrespective of potassium fertilizer in soybean fields showed differences in the abundance of piercing-sucking insects at Varennes (S2 and S3 Tables), whereas no effect was observed on the abundance of chewing insects, aphids, aphid enemies, or on the species richness of phytophagous insects. At Saint-Simon, the inoculations had no discernible effect on any of these same insect groups (S2 Table), except for Empoasca spp. which exhibited difference in abundance in potassium-fertilized plots (S2 and S3 Tables). But with A. glycines, the inoculants interacted with potassium (Fig 1; S2 Table). Numerous studies have paid attention to the effects of belowground symbiotic microbes on aboveground plant–arthropod interactions [55,56]. For example, arbuscular mycorrhizal fungi positively affected the abundance of piercing-sucking insects and specialist chewers but decreased that of generalist chewers [30]. In the same line, some studies showed that the community composition of herbivores was significantly different between plants associated or unassociated with Rhizobia [33,57]. For example, Rhizobia positively affected the chewing insects but not the piercing-sucking insects [33]. Studies conducted on free-living PGPR reported negative effects of PGPR on pests in different crops [32]. However, most of these studies were conducted in controlled conditions with one or few strains. In field conditions, cultivated legumes encounter a diverse local rhizobacteria (Rhizobia and free-living PGPR) and AMF community in the soil, including microorganisms from inoculants applied [30,35,57]. Further, both introduced inoculants and indigenous microbial community can influence host plant [36,58], and this can temper the dramatic effects otherwise seen in non-field conditions. In our study, the presence and diversity of indigenous AMF explains root colonization observed in the non-inoculated control plots (Table 2). However, our root colonization observations were purely quantitative, and thus do not preclude a possible compositional change in the root colonizing AMF community.

We found that the differences among inoculation treatments are not only affected by the sites of action, but also by the fertilization. On potassium-enriched plots in Saint-Simon, there was a significant difference between the control [C], which had the highest number of aphids, as compared to the double inoculant [MR], while no effects were observed in plots without potassium fertilizer (Fig 1B). The decrease we observed in soybean aphid abundance only with potassium fertilization suggests that the interaction between rhizobium and AMF can be influenced by nutrient condition. Previous studies showed that increased potassium levels directly and negatively influenced the soybean aphid [59,60]. It has been suggested that potassium deficiency in plant may induce an increase in levels of asparagine and other low-molecular-weight nitrogen-containing compounds, being thereby beneficial to aphids that have a nitrogen-limited diet [25]. However, in the current study, apart Empoasca spp., there was no difference between potassium treatments for all the insect groups, showing the previously reported scenario is not always the case in actual field conditions.

Importantly, our study found that independent of inoculation, AMF colonization seems to play an important role in microorganism-plant-insect interactions. In line with our second hypothesis, i.e, AMF colonization of plants can affect insect abundance and richness in field conditions, there was a negative correlation between the degree of AMF colonization and the abundance of (1) piercing-sucking insects, (2) chewing insects and (3) the species richness of phytophagous insects (Figs 24). Contrary to these findings, some reports have shown that increased AMF colonization positively influences insect performance [30,53,61,62]. Functional groups such as piercing-sucking insects (specialists and generalists) and specialist chewing insects were positively associated with high AMF-colonized plants [30]. These studies suggested that in well-established mycorrhizal plants, there was an increase of carbon/nutrient balance, which in turn lead to increased levels of carbon-based feeding deterrents, such as iridoid glycosides, that were less deleterious to piercing-sucking and specialist insects [30] than to generalists. Specialists show a high degree of adaptation to their host’s defenses and they usually perform better on mycorrhizal plants, probably because of the improved nutritional quality of the host [26].

On the other hand and in line with our investigation, some reports documented negative AMF-induced effects on insects [30]. Gange et al. (2002) showed that generalist chewing insects were negatively affected by the presence of well-established AMF communities [63]. Generalist chewing insects are relatively sensitive to plant defenses: they feed on leaf tissue, causing massive damage that activates a strong chemical defense [62]. Therefore, it is possible that the negative correlation between chewing insects and AMF plant colonization observed in our study is due to the generalist feeding habits of the chewing insects sampled. The fact that significant correlations were found only at Varennes and not at Saint-Simon is likely because the former site had an overall high number of these insect groups (Table 1).

Observed correlations in our study cannot answer which factors are actual causes or mere correlations. The outcome of an AMF-plant-insect interaction can also work in the reverse direction: herbivory can reduce AMF root colonization [29,62]. In a study where aphids were introduced to the plant before its being colonized by AMF, authors observed a reduction in subsequent AMF colonization [64]. They suggested that the antagonistic effect of aphids could operate either via reduced carbon allocation to AMF, because aphids drain carbon from the plants, or by defence-related signalling induced by the aphids that is antagonistic to AMF.

5. Conclusions

Our study showed that, under some field conditions, rhizosphere microbe inoculation can elicit an effect depending on the feeding mode of insects on soybean. However, understanding the more proximate causes of that inoculation effect will require further research on the relative diversity and composition of the microbial rhizosphere flora. Our key finding was that the mycorrhizal status of the plant plays a role in AMF-plant-insect interaction. We found that the abundance and richness of phytophagous insects (piercing-sucking and chewing) and their alpha diversity were negatively correlated with the AMF colonization rate. We suggest that mycorrhizal colonization plays a key role in insect-plant microbe interactions and its effects on insects depend on the degree of feeding specificity. Still there are contradictory reports regarding AMF effects on insect communities. Considering the suppressive effect of potassium fertilization on aphids in the AMF-inoculated plots and the other site- specific effects observed in our study suggest that, the abiotic environment also plays a crucial role in these tripartite interactions. Along with a better understanding of the many microbial actors, we believe future study on abiotic conditions will bring better understanding of these interactions and harnessing of microorganism for agriculture.

Supporting information

S1 Table. Arbuscular mycorrhizal fungi root colonization and yield of soybean at Varennes and Saint-Simon based on inoculation treatments (Control (C), Mycorrhizae+Rhizobium (MR), Mycorrhizae+Rhizobium+Bacillus (MRB)), potassium treatments (K-: Without potassium; K+: With potassium), tested individually and in interaction (F-value, df, P-value).

P <0.05; n = 48.

(DOCX)

S2 Table. Abundance of insect functional groups sampled on soybean at Varennes and Saint-Simon based on inoculation treatments (Control (C), Mycorrhizae+Rhizobium (MR), Mycorrhizae+Rhizobium+Bacillus (MRB), potassium treatments (K-: Without potassium; K+: With potassium), tested individually and in interaction (F-value, df, P-value).

Linear mixed effect model (LMM) follows by ANOVA. *: P <0.05; **: P <0.001; n = 48.

(DOCX)

S3 Table. Abundance of piercing-sucking insects and Empoasca spp. sampled on soybean at Varennes and Saint-Simon respectively based on inoculation treatments (Control (C), Mycorrhizae+Rhizobium (MR), Mycorrhizae+Rhizobium+Bacillus (MRB)) irrespective of potassium (K-: Without potassium; K+: With potassium) and vice versa.

Values represent mean ± SE of 8 replicates (n = 48) in each site. Letters follow by mean ± SE indicate significant differences among treatments based on the Tukey’s honest significant difference (HSD) test after Linear mixed effect model (LMM) follow by ANOVA. *: P <0.05.

(DOCX)

S4 Table. Correlation between the rate of arbuscular mycorrhizal fungi colonization in the roots of soybean and the abundance and richness of insects at Varennes and Saint-Simon.

Values represent correlation coefficients. **: P <0.05; *: P<0.1.

(DOCX)

S1 Data

(XLSX)

Acknowledgments

We would like to thank Premier Tech Biotechnologies (Rivière-du-Loup, Quebec, Canada) for the support in field trials and experimental design, especially Dominique Léquéré. We also thank Renaud Hadd and Lucie Kablan from Sollio Cooperative Group for their assistance. We are gratefully to Thomas Théry (Université de Montréal) for his support in the identification of some insect species. We also thank Stéphane Daigle (Institut de recherche en biologie végétale) for help with statistical analyses. We gratefully acknowledge the helpful comments from anonymous referees that improved the quality of this manuscript.

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

This work was supported by the Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery grants to CF (RGPIN 2017-06287) and to MH (RGPIN-2018-04178). EED received a scholarship from the Islamic Development Bank to support education fees and living allowances. Premier Tech Biotechnologies provided the seeds and inoculants and, in collaboration with La Coop Fédérée, the access to fields trials in for data collection.

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Decision Letter 0

Raffaella Balestrini

26 Feb 2021

PONE-D-20-33487

The effects of rhizosphere microbiome inoculation and mycorrhizal infection on phytophagous insects in soybean fields

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Reviewer #1: The work titled “The effects of rhizosphere microbiome inoculation and mycorrhizal infection on phytophagous insects in soybean fields” investigates the employment of different inocula on insects in soybean fields.

Although the topic is interesting and the introduction is very nice, there is a big problem: the success of inoculation of bacteria has not been verified and the success of AMF is not so sure, seen that there are not differences in the mycorrhization rate among control, MR and MRB. The authors speak about a possible explanation for this result, but a doubt on AM inoculation failure remains. If the inoculation has not worked, here the authors are seeing the effects of the native population present in the soils on which there are not data. In this case all the hypothesis about inoculation are not valid. Other experiments or changes in the hypotheses to be tested would be necessary.

In my opinion, this paper is not suitable for publication in PlosOne. Here, there are some observations and suggestions for authors.

Major comments

Introduction

At line 24 there is a mistake. Glomeromycota is not a phylum but a subphylum on the base of Spatafora et al. 2016.

Material and methods

Why do the authors select these two sites with different sizes?

Could the inoculation dose explain the results of inoculation? Are there proofs about the success of this dosage in similar fields and with the same plant?

The authors speak about inoculation, but they find AMF in control….so it is not inoculation the right term. In the figure they speak about colonization that is more suitable. I suggest to modify the terminology in the manuscript.

I am not so sure that OTUs can be used when there is not molecular identification but only morphological. The current definition is this: the term "OTU" is also used in a different context and refers to clusters of (uncultivated or unknown) organisms, grouped by DNA sequence similarity of a specific taxonomic marker gene. It is difficult for me to understand the OTUs not in relation to DNA and level of insect identification.

Results

At lines 219-220 add the reference to data or table or supplementary or data not shown.

With the doubt about the success of inoculation all the results based on this are doubtful (3.1 and 3.2 paragraphs).

Discussion

At lines 318-319 the sentence is not right: the effects are not on treatments, but on variables.

In the discussion it is useful to put off to tables or figures.

At lines 350-352 authors speak about the effects of bacteria but they have never checked the inoculation success and persistence.

At line 424 they speak about high, but it is very difficult to say this, seen that there are not differences among the treatments.

Table

In Table 1 Piercing-sucking insects subtotal 20: which numbers do produce 20?

Figures

I think that Fig 2, 3 and 4 are not necessary, seen that there is information in Table 4.

Minor comments

At line 39 replace “dependent on” with “related to”.

At line 46 move “simultaneously” after can.

At line 53 add “s” at the verb.

At line 55 replace “One of” with “among” and add “there” before are.

At line 59 replace “reducing” with “limiting”.

At line 63 replace “quality” with “feature”.

At line 67 move the adverbs before affect and eliminate “be it”.

At line 70 add “also” after can.

At line 82 add “a” after of.

Lines from 114-116 replace “high and low” with maximum and minimum.

Check along the text not to separate subject and verb with comma.

At line 134 move “also” after the verb.

At line 141 add “insects” after sampled.

At line 149 replace “to” with “in” and move the adverb after was.

At lines 177 178 remove species and genus, and replace “these” with “this”.

At line 181 eliminate “measures of”.

At line 197 add “were studied using” and eliminate “, we used”.

At line 219 add “e” for here.

Move the comments in the results and put in the right section (lines 265-266; 282-283 moreover it is a sentence non clear).

At line 292 add “insects” after chewing.

At line 323 replace “we expected” with we can explain.

At line 324 replace “may be explained by” with “with”.

Chose as to write above-ground or aboveground.

At line 339-340 rephrase and add reference to table.

At line 349 replace “in high abundance” with abundantly.

At line 358 replace “most” with “majority the”.

At line 360 replace “relative” with compared.

At line 376 replace “that” with i.e.,

At line 430 there is some mistakes.

Reviewer #2: The manuscript entitled “The effects of rhizosphere microbiome inoculation and mycorrhizal infection on

phytophagous insects in soybean fields” by Dabré, Lee, Hijri and Favret deals with the effects on the abundance and the diversity of phytophagous bugs in two soybean fields, treated with the arbuscular mycorrhizal fungus, Rhizophagus irregularis, combined with a nitrogen-fixing bacterium, Bradyrhizobium japonicum, and a plant growth-promoting bacterium, Bacillus pumilus, in the presence and in the absence of potassium fertilizer. The topic is surely interesting, as the investigation was carried up in open fields on an economically important crop and it covers up to the third trophic level. The manuscript is clear and well written, statistical analyses and presented data are technically sound. Major drawbacks are the results of mycorrhizal colonization following inoculation with commercial inoculants, as they were similar with those obtained in control theses. Authors should revise the whole manuscript taking into account this issue, avoiding conclusive or deductive sentences on the effects due to inoculants (i. e. L267-268 change with something like “a significant higher number of insects was collected…” instead of “…the inoculants did affect abundance”). In this perspective, the correlation between insect abundance/diversity and mycorrhizal colonization rate (irrespective of the treatments) becomes therefore the main core of the manuscript. My suggestion is to shorten the title in “The effects of mycorrhizal infection on phytophagous insects in soybean fields”. From this point of view, discussion (especially the first part L318-331) needs to be reformulated, also because here and there it is a repetition of results.

In conclusion, taken together your data seem to indicate that higher abundance of pierce-sucking insects is observed with low mycorrhizal colonization rate, and also in the treatment MRB (not MR), at least in one site (table 3). An hypothesis could be that increase in insect abundance is due more to the plant growth-promoting bacterium, Bacillus pumilus, rather than the AMF. This might be discussed, with appropriate literature support.

The manuscript needs major revisions to be accepted for publication.

Minor comments

L24: Glomeromycota in italics

L35: Delete “Meanwhile” and the comma between the subject “free-living PGPR” and the verb “can promote”

L55-74: make a unique paragraph.

L184: avoid “versus”, there is no an opposition, only a distinction in different categories.

L216: add “measured in different plots” after “colonization rate. It should improve clarity of the analysis.

L219: here not her.

L219-224: Maybe the passive form for these sentences is more appropriate.

L219-220 and L224-225: these sentences are repeating the same concept.

L248: the data were pooled irrespective of K+/K- treatments, isn’t it? Please specify here and in caption to Table 3.

L290: add “irrespective of treatments” after “rate of mycorrhization”. It should improve clarity of the analysis.

L358-359: please rephrase, not very clear. Which “other effects”?

L370-371: use “similar” instead of “the same”, Empoasca spp. are known as mainy mesophyll feeder though not exclusive, aphids mainly phloem feeders.

**********

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Reviewer #2: No

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PLoS One. 2021 Sep 22;16(9):e0257712. doi: 10.1371/journal.pone.0257712.r002

Author response to Decision Letter 0


24 Apr 2021

Response to Reviewers, PLOS ONE

Thank you for your time handling our manuscript. We here address the concerns raised by the reviews of the first version. Reference to specific line numbers here refer to the clean version of the revised manuscript (not the one with track changes). The most important limitation of the manuscript concerned the probable insufficiency of microbial inoculation since there was as much mycorrhizal infection in the control as in the experimental plots. To address this concern, we emphasized the uncertain nature of the proximate cause of the results of the inoculation experiment. That is, we explicitly acknowledge that the inoculation did not increase the level of mycorrhization and that we did not measure the microbial diversity (L215-219) and, therefore, that we can only surmise that these unevaluated factors played a role in (L305-307), for example, increasing the abundance of piercing-sucking insects in the triple-inoculant plots. As a consequence, we recommend that future research evaluate the full biological diversity of the rhizosphere (L20-21 and L373-376). We maintained the results section largely intact but, to refocus it more towards the evaluation of overall mycorrhization and away from the treatment experiment, we transferred former Tables 3 and 4 to the supplementary materiel. Finally, we revised the title of the manuscript to better reflect the content.

We implemented the journal requirements: 1) style requirements; 2) methods section with additional information concern the fields site access (L135-137); 3) funding information that we removed from the Acknowledgments section and added to cover letter.

Here are the responses to the questions of reviewers.

Reviewer #1: “there is a big problem: the success of inoculation of bacteria has not been verified and the success of AMF is not so sure, seen that there are not differences in the mycorrhization rate among control, MR and MRB. The authors speak about a possible explanation for this result, but a doubt on AM inoculation failure remains. If the inoculation has not worked, here the authors are seeing the effects of the native population present in the soils on which there are not data. In this case all the hypothesis about inoculation are not valid. Other experiments or changes in the hypotheses to be tested would be necessary.”

- Thank you very much for your helpful criticism. We hope that the changes described in our paragraphs above address the reviewer’s concerns. We agree that the hypotheses regarding the inoculation treatments are not fully supported given that 1) the treatments did not visibly affect the rate of mycorrhization and 2) we did not measure the relative diversity of the microbial rhizosphere. We also agree that a better comprehension of the microbial rhizosphere in general and, especially in the context of the hypotheses we proposed, how it is affected by soil inocula, would help evaluate their effects on the multitrophic system we studied. However, even microbiologists admit to a lack of understanding of the microbial diversity of the rhizosphere and of the difficulties of studying it (Hepper et al. 1988; Dean et al. 2009; Engelmoer et al. 2014) and, unfortunately, we are not in a position to retrospectively evaluate the very complex microbial flora of our study system. Nonetheless, we think our limited results are worthy of being made available to interested readers because we did in fact detect an effect of inoculation, even if we cannot explain its proximate cause. We hope our experience will help inform future research.

Major comments

Introduction

At line 24 there is a mistake. Glomeromycota is not a phylum but a subphylum on the base of Spatafora et al. 2016.

- L28: indeed, Schüßler et al. (2001) introduced the phylum Glomeromycota to accommodate arbuscular mycorrhizal fungi. But Spatafora et al. 2016 introduced subphylum Glomeromycotina Spatafora & Stajich (demoted the phylum to subphylum) and accepted under phylum Mucoromycota. However, certain authors such as Tedersoo et al. 2018, Wijayawardene et al. 2018, maintained the phylum Glomeromycota.

Material and methods

Why do the authors select these two sites with different sizes?

- L97-98: the experiment was done in collaboration with a company producing and promoting biofertilizers that also provided the living materiel. The sites and experimental design had been already established by the company (L135-137).

Could the inoculation dose explain the results of inoculation? Are there proofs about the success of this dosage in similar fields and with the same plant?

- Thank for your questions regarding inoculation. Indeed, the effects of plants inoculation with commercial strains in natural environment remains a challenge. Because in natural conditions, many of these organisms exist indigenously and the interaction with the plant depend on several factors: the quantity and viability of the strains in the soil, the agricultural practices that are unfavorable to the beneficial organisms, the soil, and climatic conditions.

- In L304-312 we explained this situation with the case of AMF because in the control plots, we had colonization independent of inoculation. This confirms that the soil microbiome can play an important role in the microorganism-plant relationships. You were right about the worries raised concern the attribution of the effects due to inoculation. But not having evaluated the mycorrhizal and bacterial component of the rhizosphere, we can make assumptions to explain the results. What we should focus more is the core of this study which remains the correlation between mycorrhizal infection and insect abundance and richness.

- We are not aware of any published studies that have tested the relative success of various dosages in similar soybean fields.

The authors speak about inoculation, but they find AMF in control….so it is not inoculation the right term. In the figure they speak about colonization that is more suitable. I suggest modifying the terminology in the manuscript.

- We reserved the term "inoculation" to refer to the commercial strains put into the soil at the time of seeding. Thank for your suggestion.

I am not so sure that OTUs can be used when there is not molecular identification but only morphological. The current definition is this: the term "OTU" is also used in a different context and refers to clusters of (uncultivated or unknown) organisms, grouped by DNA sequence similarity of a specific taxonomic marker gene. It is difficult for me to understand the OTUs not in relation to DNA and level of insect identification.

- L168-171: you are right about the term “OTU" in a microbial context, but in entomology, operational taxonomic units (OTUs) can be used to indicate categories of specimens that share morphological characters: these are sometimes call morphospecies. We cited Favret et al 2019 as reference.

Results

At lines 219-220 add the reference to data or table or supplementary or data not shown. With the doubt about the success of inoculation all the results based on this are doubtful (3.1 and 3.2 paragraphs).

- L213 and L225 respectively 3.1 and 3.2 paragraphs: as explain above, it is difficult to assert that inoculation did not work, even if it was not measurable, due to the certain presence of indigenous mycorrhizal spores. Of course, this is the difficulty of working in a natural setting instead of the controlled laboratory, but even if we cannot be definitive, we are still left to explain why the plots with triple-inoculant-treatments saw an increase in the number of piercing-sucking insects.

- L304-312: we explain these results by a possible influence of each or both inoculants (introduced and native). For example, a study by Dean et al. 2009 (https://doi.org/10.1007/s11104-009-9924-1) compared 2 sources of Bradyrhizobium japonicum (commercial and native) on soybean aphid and showed a decrease in the aphid abundance with the native strain. Without a genetic analysis to get the identity of the strains, there could think that this effect was due to the introduced inoculants.

- Because of the presence of native strains in our study and not having measured the microbial community in the soil, we think that it is hard to reject these results.

Discussion

At lines 318-319 the sentence is not right: the effects are not on treatments, but on variables.

- L289-292: sentence changed. The term "treatments" referred to inoculant treatment with the 3 groups (control, MR and MRB) (S1 Table).

-

In the discussion it is useful to put off to tables or figures.

- L288-358: done.

At lines 350-352 authors speak about the effects of bacteria but they have never checked the inoculation success and persistence.

- L310-312: sentence changed.

At line 424 they speak about high, but it is very difficult to say this, seen that there are not differences among the treatments.

- L358: sentence removed; here, it is to specify that despite a measurable effect of inoculation, there was yet an important level of mycorrhizal colonization in roots (L308-310). Term changed.

Table

In Table 1 Piercing-sucking insects subtotal 20: which numbers do produce 20?

- L184 (Table 1): 20 is the sum of OTUs =13+1+6 respectively Aphids subtotal+Empoasca spp.+ Other piercing-sucking insects.

Figures

I think that Fig 2, 3 and 4 are not necessary, seen that there is information in Table 4.

- We kept the figures to show the direction of the correlation and put the Table 4 as supplementary material (S4 Table).

Minor comments (the responses are in bold)

At line 39 replace “dependent on” with “related to”- L40: word changed.

At line 46 move “simultaneously” after can- L47: word removed.

At line 53 add “s” at the verb- L52: letter added.

At line 55 replace “One of” with “among” and add “there” before are- L54: sentence changed after revision.

At line 59 replace “reducing” with “limiting”- L58: word replaced.

At line 63 replace “quality” with “feature”- L61: word replaced.

At line 67 move the adverbs before affect and eliminate “be it”- L64: sentence modified.

At line 70 add “also” after can- L68: word added.

At line 82 add “a” after of – L79: “a” added.

Lines from 114-116 replace “high and low” with maximum and minimum - L109-111: words replaced.

Check along the text not to separate subject and verb with comma: done

At line 134 move “also” after the verb- L129: word moved.

At line 141 add “insects” after sampled- L139: word added.

At line 149 replace “to” with “in” and move the adverb after was- L147: words replaced and moved.

At lines 177-178 remove species and genus and replace “these” with “this”- L174-175: words changed.

At line 181 eliminate “measures of”- L178: words removed.

At line 197 add “were studied using” and eliminate “, we used”- L196-197: sentence changed after revision.

At line 219 add “e” for here- L212: sentence removed after revision.

Move the comments in the results and put in the right section (lines 265-266; 282-283 moreover it is a sentence non clear)- L240-241: sentences changed.

At line 292 add “insects” after chewing- L270: word added.

At line 323 replace “we expected” with we can explain- L294: sentences changed.

At line 324 replace “may be explained by” with “with”- L295: sentences changed.

Chose as to write above-ground or aboveground- L294-295: suggestion done.

At line 339-340 rephrase and add reference to table- L308-309: sentence changed.

At line 349 replace “in high abundance” with abundantly- L310: sentence changed.

At line 358 replace “most” with “majority the”- L292-293: sentence changed.

At line 360 replace “relative” with compared- L323: sentence changed.

At line 376 replace “that” with i.e.,- L328: word replaced.

At line 430 there is some mistakes-L362: sentence corrected.

Reviewer #2: Major drawbacks are the results of mycorrhizal colonization following inoculation with commercial inoculants, as they were similar with those obtained in control theses. Authors should revise the whole manuscript taking into account this issue, avoiding conclusive or deductive sentences on the effects due to inoculants (i. e. L267-268 change with something like “a significant higher number of insects was collected…” instead of “…the inoculants did affect abundance”). In this perspective, the correlation between insect abundance/diversity and mycorrhizal colonization rate (irrespective of the treatments) becomes therefore the main core of the manuscript. My suggestion is to shorten the title in “The effects of mycorrhizal infection on phytophagous insects in soybean fields”. From this point of view, discussion (especially the first part L318-331) needs to be reformulated, also because here and there it is a repetition of results.

In conclusion, taken together your data seem to indicate that higher abundance of pierce-sucking insects is observed with low mycorrhizal colonization rate, and also in the treatment MRB (not MR), at least in one site (table 3). A hypothesis could be that increase in insect abundance is due more to the plant growth-promoting bacterium, Bacillus pumilus, rather than the AMF. This might be discussed, with appropriate literature support.

- Thank you for the kind words regarding the manuscript (not repeated here) and especially for the suggestions for its improvement. We have addressed the major criticism regarding the unimproved rate of mycorrhization in the experimental as opposed to the control plots in the replies to the editor and reviewer 1. Indeed, the introduction and especially the discussion were significantly modified.

Title of the manuscript

- L1-2: as suggested, we revised the title to emphasize the issue of mycorrhization correlated with the abundance and richness of phytophagous insects, which is the main core of the manuscript.

The whole manuscript

- Indeed, we noted that the question of how inoculations work is not explicit, and sometimes we went very quickly to certain conclusions, which was often confusing. In the revised manuscript, we provided more details about inoculations (introduction of commercial strains into the soil, which have been selected for their ability to enhance crop yields) and inoculants, which may be indigenous strains present in the soil in addition to the introduced strains.

Results

L267-268

- As you suggested, we revised the manuscript by presenting our results with appropriate terms by avoiding deductive or conclusive sentences (i.e. L242-243).

Discussion

L318-331

- The first part of the discussion is reformulated considering the title and the results (L288-311).

Taken together the data seem to indicate that higher abundance of pierce-sucking insects is observed with low mycorrhizal colonization rate, and also in the treatment MRB (not MR), at least in one site (table 3). A hypothesis could be that increase in insect abundance is due more to the plant growth-promoting bacterium, Bacillus pumilus, rather than the AMF.

- L303-309: we agree with the reviewer that the bacterial components of the rhizosphere may have affected the insect populations. In light of this, we recommend further work be done to evaluate the taxonomic make-up of the microbial rhizosphere and its effects on the plants and higher trophic levels (L19-21).

Minor comments (the responses are in bold)

L24: Glomeromycota in italics-L28: changed

L35: Delete “Meanwhile” and the comma between the subject “free-living PGPR” and the verb “can promote”- L39: meanwhile and the comma removed.

L55-74: make a unique paragraph-L54-72: done

L184: avoid “versus”, there is no an opposition, only a distinction in different categories-L181: “versus” delete and replace by “and”.

L216: add “measured in different plots” after “colonization rate. It should improve clarity of the analysis- L211: sentence modified as you suggested.

L219: here not her-L212: sentence removed after revision

L219-224: Maybe the passive form for these sentences is more appropriate- L212: sentence changed.

L219-220 and L224-225: these sentences are repeating the same concept-L215-216: sentence removed and corrected.

L248: the data were pooled irrespective of K+/K- treatments, isn’t it? Please specify here and in caption to Table 3-L233-234: yes, precision done and in caption to S1 Table.

L290: add “irrespective of treatments” after “rate of mycorrhization”. It should improve clarity of the analysis- L268: sentence modified as you suggested.

L358-359: please rephrase, not very clear. Which “other effects”?- L291-292: sentence changed.

L370-371: use “similar” instead of “the same”, Empoasca spp. are known as many mesophyll feeders though not exclusive, aphids mainly phloem feeders-L323: sentence removed after revision.

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 1

Raffaella Balestrini

17 May 2021

PONE-D-20-33487R1

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields

PLOS ONE

Dear Dr. Dabré,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

Please still answer to the coments of reviewer # 2. 

==============================

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Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

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Reviewer #1: Yes

Reviewer #2: Yes

**********

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PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: (No Response)

Reviewer #2: Yes

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Reviewer #1: The work ‘The effects of mycorrhizal colonization on phytophagous insects and their natural

enemies in soybean fields’ has been improved. I thank the authors for the added clarifications and done changes.

In my opinion, this paper is suitable for publication in Plos One.

Reviewer #2: The revision surely improves the manuscript quality that now is suitable for publication.

Minor issue:

L219 Change “microbial community is general” with “microbial community in general”.

**********

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Reviewer #1: No

Reviewer #2: No

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PLoS One. 2021 Sep 22;16(9):e0257712. doi: 10.1371/journal.pone.0257712.r004

Author response to Decision Letter 1


26 May 2021

Thank you for your time handling our manuscript. We hereby confirm that the reference list is update, complete and correct. Any reference cited in the text is in the bibliography.

Here is the response to the question of reviewer 2.

Minor issue: (the response is in bold)

L219- Change “microbial community is general” with “microbial community in general”- L219: word replace in the sentence

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 2

Alejandro Carlos Costamagna

29 Jul 2021

PONE-D-20-33487R2

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields

PLOS ONE

Dear Dr. Dabré,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Dear Dr. Dabré,

I was reassigned as editor for your paper yesterday; I apologize for the delay returning a review for your manuscript. The main issue that remains to be solved before this article can be published is the lack of clarity (and description) on the statistical analyses. You mention 6 treatments, but your analysis suggests a factorial design: C, MR and MRB crossed with K+ and K-. Did you test for an interaction between K and microbial treatments? Why not? Where is the block effect tested? Please report all stats (i.e. K treatment and block effects) for all tests; please also report df (missing in some tests). Why did you used a mixed model (i.e. what factors are random and what factors are fixed)?

It is unclear how some of the treatment comparisons were done. For example, in Lines 242-247, did you do comparisons of microbial treatments separately for the K+ and K- treatments? The df of 2 and 21 (L242) and 2 and 14 (L247) of the tests suggest that; please provide a more explicit description of the tests performed and the results obtained.

There are still several typos in the paper. I indicate several below, but it will be good if a another careful proof-read is made on the final version.

Minor changes:

L73 change “AM fungi” to “AMF” for consistency

L79: delete “in an agronomic system,” (sentence is too long, and at the end you mention soybean an under field conditions…)

L84: replace “is” by “are”

L123/129: fix typo in “block” (check for others I may have missed…) 

L198: the reference provided for the Shannon diversity index equation uses ln, not log2; please provide a reference using the formula you stated.

L201: change “responding variables” to “response variables”

L207: rewrite “In a case of significance difference was observed, “ to “When significant differences were observed,” ….

L211: please justify the use of Kendall correlation coefficients

L292: change “excepted” by “except for”

L341: change to “On the other hand and in line with our investigation,”

L346-348: change to “Therefore, it is possible that the negative correlation between

chewing insects and AMF plant colonization observed in our study is due to the generalist feeding habits of the chewing insects sampled”

Please revise all citations, several are incomplete, including: 12, 23, 24, 25, 38, 48, 58. Please follow journal format regarding the provision of doi (several are missing)

Please submit your revised manuscript by Sep 12 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

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If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Alejandro Carlos Costamagna, Ph.D.

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

Additional Editor Comments (if provided):

Dear Dr. Dabré,

I was reassigned as editor for your paper yesterday; I apologize for the delay returning a review for your manuscript. The main issue that remains to be solved before this article can be published is the lack of clarity (and description) on the statistical analyses. You mention 6 treatments, but your analysis suggests a factorial design: C, MR and MRB crossed with K+ and K-. Did you test for an interaction between K and microbial treatments? Why not? Where is the block effect tested? Please report all stats (i.e. K treatment and block effects) for all tests; please also report df (missing in some tests). Why did you used a mixed model (i.e. what factors are random and what factors are fixed)?

It is unclear how some of the treatment comparisons were done. For example, in Lines 242-247, did you do comparisons of microbial treatments separately for the K+ and K- treatments? The df of 2 and 21 (L242) and 2 and 14 (L247) of the tests suggest that; please provide a more explicit description of the tests performed and the results obtained.

There are still several typos in the paper. I indicate several below, but it will be good if a another careful proof-read is made on the final version.

Minor changes:

L73 change “AM fungi” to “AMF” for consistency

L79: delete “in an agronomic system,” (sentence is too long, and at the end you mention soybean an under field conditions…)

L84: replace “is” by “are”

L123/129: fix typo in “block” (check for others I may have missed…)

L198: the reference provided for the Shannon diversity index equation uses ln, not log2; please provide a reference using the formula you stated.

L201: change “responding variables” to “response variables”

L207: rewrite “In a case of significance difference was observed, “ to “When significant differences were observed,” ….

L211: please justify the use of Kendall correlation coefficients

L292: change “excepted” by “except for”

L341: change to “On the other hand and in line with our investigation,”

L346-348: change to “Therefore, it is possible that the negative correlation between

chewing insects and AMF plant colonization observed in our study is due to the generalist feeding habits of the chewing insects sampled”

Please revise all citations, several are incomplete, including: 12, 23, 24, 25, 38, 48, 58. Please follow journal format regarding the provision of doi (several are missing)

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The work ‘The effects of mycorrhizal colonization on phytophagous insects and their natural

enemies in soybean fields’ has been improved too.

In my opinion, this paper is suitable for publication in Plos One.

Reviewer #2: All comments have been addressed.

**********

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Reviewer #1: No

Reviewer #2: No

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

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PLoS One. 2021 Sep 22;16(9):e0257712. doi: 10.1371/journal.pone.0257712.r006

Author response to Decision Letter 2


13 Aug 2021

Thank you for your time handling our manuscript. We here address the concerns raised by the reviews of the academic editor. Indeed, you were right about the statistics and thank you for your pertinent observations. We confirm that we performed an interaction between microbial treatments and potassium. Certainly, the way we presented the results could lead to believe that we had not performed it. Also, the lack of some details in our explanations may not allow for a better understanding. Thus, we revised the results tables with more clarity (L224-Table 2 and S Tables) and made a careful reading of this revised version of the manuscript. Reference to specific line numbers here refer to the clean version of the revised manuscript (not the one with track changes).

Here are the responses to the comments and questions raised by the academic editor:

1-You mention 6 treatments, but your analysis suggests a factorial design: C, MR and MRB crossed with K+ and K-.

L115-120-Indeed, it is a factorial design with 2 factors: an inoculant factor with 3 levels (C, MR and MRB) crossed with another factor, the potassium with 2 levels (K+ and K-); which gives 3x2 or 6 plots/bloc replicates 8 times.

2-Did you test for an interaction between K and microbial treatments? Why not?

Yes, we tested the interaction between microbial treatments and potassium. Maybe we were not precise, but the interaction was tested. Of all tests, only the interaction was observed with Aphis glycines at Saint-Simon (S Tables). That motivated us to make 2 tables (S1 effects of inoculants on insects and S2 effects of potassium). But in the revised manuscript we merged the 2 tables. Below figure is an example on the output of analysis of variance apply to the Linear mixed model (LMM) when testing the effects of inoculants and potassium on piercing-sucking insects at Varennes. It shows individual and the interaction effects between the two factors (inoculants and potassium).

aoVar_piq : LMM model

aovVar_piq<-lmer(Tot_piq~Trait*K+(1|Bloc)+(1|Bloc:Trait)+(1|Bloc:K), data=Analys_Var)

Trait: inoculants treatments

K: potassium

Trait:K= interaction

3-Why did you used a mixed model (i.e. what factors are random and what factors are fixed)? Where is the block effect tested? Please report all stats (i.e. K treatment and block effects) for all tests; please also report df (missing in some tests).

L200-201: we used mixed model because of fixed effects (inoculants treatments, potassium) and random effects (blocks). The block effects are included in the model formulation:

Model<-lmer (variable~Trait*K+(1|Bloc) +(1|Bloc: Trait) +(1|Bloc: K), data=Data)

Trait=Inoculants K=Potassium

4-It is unclear how some of the treatment comparisons were done. For example, in Lines 242-247, did you do comparisons of microbial treatments separately for the K+ and K- treatments? The df of 2 and 21 (L242) and 2 and 14 (L247) of the tests suggest that; please provide a more explicit description of the tests performed and the results obtained.

In this paragraph, we would like to provide more details, but the explanations not sounded. Otherwise, there was a significant interaction between microbial treatments and potassium for the soybean aphid, Aphis glycines (F2.21=6.69, P=0.006, Fig 1; S1-S3 Tables). Later, we went into more details by showing the behavior of the microbial inoculants in the presence or absence of potassium, which effectively makes a separate analysis. In the revised manuscript, we corrected all the paragraph (L245-254).

Here are the responses to the minor issues raised by academic editor and reviewer (s).

5-Minor changes: (the response is in bold)

L73 change “AM fungi” to “AMF” for consistency-L73: word change

L79: delete “in an agronomic system,” (sentence is too long, and at the end you mention soybean an under field conditions…)-L79: sentence deleted

L82-L100: number of rhizobium bacterium strain corrected.

L84: replace “is” by “are”-L84: word replaced.

L123/129: fix typo in “block” (check for others I may have missed…)-L123/129: word corrected and in the whole manuscript.

L198: the reference provided for the Shannon diversity index equation uses ln, not log2; please provide a reference using the formula you stated-L199: you are right, it was an error and we corrected it.

L201: change “responding variables” to “response variables”-L203: sentence changed

L207: rewrite “In a case of significance difference was observed, “to “When significant differences were observed,”-L208-209: sentence rewritten.

L211: please justify the use of Kendall correlation coefficients-L211: We used Kendall correlation because our data did not meet all the assumptions of normal distribution to apply Pearson correlation that we made first.

L292: change “excepted” by “except for”- L299: word changed.

L341: change to “On the other hand and in line with our investigation,”-L348: sentence changed

L346-348: change to “Therefore, it is possible that the negative correlation between

chewing insects and AMF plant colonization observed in our study is due to the generalist feeding habits of the chewing insects sampled”-L353-354: sentence changed.

6-Please revise all citations, several are incomplete, including: 12, 23, 24, 25, 38, 48, 58. Please follow journal format regarding the provision of doi (several are missing)

We hereby confirm that the reference list is update, complete and correct. Any reference cited in the manuscript is in the bibliography.

L426: citation 12- is a book-replaced by another citation also pertinent

L463: citation 23- there is no doi associated with this citation on the journal site; but it has been completed by adding the journal name, the volume number, the year and the pages number (suggested citation)

L466: citation 24: there is no doi associated with this citation on the journal site; but it has been completed by adding the journal name, the volume number, the year and the pages number (suggested citation)

L469: citation 25-citation corrected

L515: citation 38- became 39- corrected

L549: citation 48-became 49- corrected

L579: citation 58-became 59-corrected

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 3

Alejandro Carlos Costamagna

31 Aug 2021

PONE-D-20-33487R3

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields

PLOS ONE

Dear Dr. Dabré,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

==============================

Thanks for the revised version of our paper and providing more details on your statistical analysis. There are few clarifications in the text of the manuscript needed before final publication.

Section 3.1. There are no Anova test results reported for the main effects, Potassium and inoculation treatments, and their interaction. Please report them in the text. In Table 2 you report tests comparing the inoculant treatments (C, MR, and MRB) separately within each K treatment. This is justified if you have a significant interaction between inoculant and K treatments, however that was not indicated. I think is ok to present the means+/- SE of the 6 treatments, as you have them currently in Table 2, but not the anova tests within factors unless you have significant interactions (in which case you also need to check differences for K within each inoculation treatment). Also, always report both degrees of freedom for your anova tests, numerator and denominator, separated by commas in your tables or as subscripts after the F in the text.

Supplementary tables: do not repeat values in tables S1 and S2. I suggest you delete the stats in table S2 (already reported in S1) and only leave the different letters indicating the Tukey test for pierce-sucking insects at Varennes and for the main effect test on Empoasca in Saint-Simon. I suggest you delete S3, as the same information is presented in Figure 2.

Minor changes:

L 194: replace “normal logarithm” by “natural logarithm”

L 238: F test number does not match exactly table S1, please check.

L 296/300/etc.; global change: please change “S1 and S2 Tables” to “Tables S1 and S2”

L 310: replace “fields conditions” by “field conditions”

L313: to avoid repetition with the previous sentence, I would replace “In field conditions,” by “Further,”

L357: replace insects’, by “insect”

L374: delete “the” before mycorrhizal

L375: delete “can” before depend

L385: after “in our study,” add “suggest that”

==============================

Please submit your revised manuscript by Oct 15 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. Please use red font color in all the changes in your manuscript, to facilitate the review (instead of track changes using word) 

  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Alejandro Carlos Costamagna, Ph.D.

Academic Editor

PLOS ONE

Journal Requirements:

Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Sep 22;16(9):e0257712. doi: 10.1371/journal.pone.0257712.r008

Author response to Decision Letter 3


4 Sep 2021

Response to Reviewers, PLOS ONE

We thank you for your important comments and suggestions. We here address the concerns raised by the reviews of the academic editor. Reference to specific line numbers here refer to the clean version of the revised manuscript (not the one with track changes).

Here are the responses to the comments and questions raised by the academic editor:

1- Section 3.1. There are no Anova test results reported for the main effects,

Potassium and inoculation treatments, and their interaction. Please report them in the text. In Table 2 you report tests comparing the inoculant treatments (C, MR, and MRB) separately within each K treatment. This is justified if you have a significant interaction between inoculant and K treatments, however that was not indicated. I think is ok to present the means+/- SE of the 6 treatments, as you have them currently in Table 2, but not the anova tests within factors unless you have significant interactions (in which case you also need to check differences for K within each inoculation treatment). Also, always report both degrees of freedom for your anova tests, numerator and denominator, separated by commas in your tables or as subscripts after the F in the text.

Response: L216-229: Section 3.1. We added a new table named S1 Table (Supplementary materiel) with the Anova test results for the main effects, potassium, inoculation treatments, and their interaction. We also keep the Table 2 with means because we mentioned it as support in the discussion section (L315). For the degrees of freedom as numerator and denominator with F values, we reported them in all the text.

2. Supplementary tables: do not repeat values in tables S1 and S2. I suggest you delete the stats in table S2 (already reported in S1) and only leave the different letters indicating the Tukey test for pierce-sucking insects at Varennes and for the main effect test on Empoasca in Saint-Simon. I suggest you delete S3, as the same information is presented in Figure 2.

Response- With the insertion of the new S1 table, the former Tables S1 and S2 are know Tables S2 and S3 respectively in the revised version. In the new S3 Table, we deleted the stats and left only piercing-sucking insects at Varennes and Empoasca spp. at Saint-Simon. We also deleted the former S3 Table as you suggested.

3-Minor changes: (the response is in bold)

L 194: replace “normal logarithm” by “natural logarithm”-L194: word replaced

L 238: F test number does not match exactly table S1, please check-L238: F test number changed

L 296/300/etc.; global change: please change “S1 and S2 Tables” to “Tables S1 and S2”-L295-300: words changed

L 310: replace “fields conditions” by “field conditions”-L309: words replaced

L313: to avoid repetition with the previous sentence, I would replace “In field conditions,” by “Further,”-L312: sentence replaced by the suggested one

L357: replace insects’, by “insect”-L356: word replaced

L374: delete “the” before mycorrhizal-L373: word deleted

L375: delete “can” before depend-L374: word deleted

L385 (You mean L378? because the L385 is in the section of Acknowledgements): after “in our study,” add “suggest that”-L377: sentence added

Attachment

Submitted filename: Response to Reviewers.docx

Decision Letter 4

Alejandro Carlos Costamagna

9 Sep 2021

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields

PONE-D-20-33487R4

Dear Dr. Dabré,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Alejandro Carlos Costamagna, Ph.D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Acceptance letter

Alejandro Carlos Costamagna

13 Sep 2021

PONE-D-20-33487R4

The effects of mycorrhizal colonization on phytophagous insects and their natural enemies in soybean fields

Dear Dr. Dabré:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Alejandro Carlos Costamagna

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Arbuscular mycorrhizal fungi root colonization and yield of soybean at Varennes and Saint-Simon based on inoculation treatments (Control (C), Mycorrhizae+Rhizobium (MR), Mycorrhizae+Rhizobium+Bacillus (MRB)), potassium treatments (K-: Without potassium; K+: With potassium), tested individually and in interaction (F-value, df, P-value).

    P <0.05; n = 48.

    (DOCX)

    S2 Table. Abundance of insect functional groups sampled on soybean at Varennes and Saint-Simon based on inoculation treatments (Control (C), Mycorrhizae+Rhizobium (MR), Mycorrhizae+Rhizobium+Bacillus (MRB), potassium treatments (K-: Without potassium; K+: With potassium), tested individually and in interaction (F-value, df, P-value).

    Linear mixed effect model (LMM) follows by ANOVA. *: P <0.05; **: P <0.001; n = 48.

    (DOCX)

    S3 Table. Abundance of piercing-sucking insects and Empoasca spp. sampled on soybean at Varennes and Saint-Simon respectively based on inoculation treatments (Control (C), Mycorrhizae+Rhizobium (MR), Mycorrhizae+Rhizobium+Bacillus (MRB)) irrespective of potassium (K-: Without potassium; K+: With potassium) and vice versa.

    Values represent mean ± SE of 8 replicates (n = 48) in each site. Letters follow by mean ± SE indicate significant differences among treatments based on the Tukey’s honest significant difference (HSD) test after Linear mixed effect model (LMM) follow by ANOVA. *: P <0.05.

    (DOCX)

    S4 Table. Correlation between the rate of arbuscular mycorrhizal fungi colonization in the roots of soybean and the abundance and richness of insects at Varennes and Saint-Simon.

    Values represent correlation coefficients. **: P <0.05; *: P<0.1.

    (DOCX)

    S1 Data

    (XLSX)

    Attachment

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    Submitted filename: Response to Reviewers.docx

    Attachment

    Submitted filename: Response to Reviewers.docx

    Attachment

    Submitted filename: Response to Reviewers.docx

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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