Abstract
HIV is a virus that remains a major health concern and results in an infection that has no cure even after over 30 years since its discovery. As such, HIV vaccine discovery continues to be an area of intensive research. In this review, we summarize the most recent HIV vaccine efficacy trials, clinical trials initiated within the last 3 years, and discuss prominent improvements that have been made in prophylactic HIV vaccine designs.
Keywords: Human immunodeficiency virus, vaccine, broadly neutralizing antibodies, review
1. Introduction
Much has happened in the field of human immunodeficiency virus-1 (HIV) vaccine research in recent years. The field of vaccinology has advanced considerably in the last decade, giving rise to novel vaccines for human pathogens. HIV is a pathogen that has challenged vaccine researchers for over 30 years. Momentous HIV research milestones have been reached in the last decade, particularly in immunogen development. Yet, a working vaccine is still lacking. While public education, accessibility to antiretroviral therapy (ART), and pre-exposure prophylaxis (PrEP) have reduced spread of the virus especially in the developed world, HIV still lacks a complete cure and the ongoing HIV epidemic continues to heavily impact Sub-Saharan Africa. As of 2019, 38 million people globally were living with HIV, with 1.7 million new infections [1]. The development of an efficacious HIV vaccine continues to be a challenging but essential component for controlling the HIV epidemic.
Several aspects of HIV make vaccine development by traditional methods notoriously challenging. The vast majority of vaccines protect by eliciting efficient antibody responses [2]. On the surface of HIV, there is only one antigenic target, the Envelope (Env) trimeric viral spike protein, responsible for the fusion machinery of HIV-1. The full Env trimer consists of three non-covalently associated protomers formed by gp120 and transmembrane domain containing gp41 subunits, that are formed following post-translational cleavage of the gp160 polypeptide. The Env ectodomain has a median of 30 N-linked glycosylation sites per protomer [3], and this massive glycan shield limits accessibility to the protein surface. Genetic variability arising from high mutability of HIV, along with Env glycan cloaking makes it exceptionally challenging for the humoral immune system to generate antibodies that can neutralize the vast diversity of circulating HIV strains.
The sequence diversity of HIV Env results in stratification of isolates exhibiting varying degrees of sensitivity to neutralization referred to as tiers [4]. The HIV Env trimer is metastable, and exhibits ‘open’, ‘intermediate’, and ‘closed’ conformational states [5,6]. Tier 1A and tier 1B viruses are most sensitive to neutralization, and preferentially adopt the open and intermediate states. On the contrary, tier 2 (representing the majority of circulating HIV strains) and tier 3 viruses, are much more resistant to neutralization and favor the closed conformation [7]. This closed trimeric prefusion configuration of Env is heavily shielded by glycans, and is the primary target for antibody-based vaccines [8]. Presentation of the Env trimer and Env subunit components in alternate conformations, such as monomeric gp120 or open trimer conformations, shifts immunogenicity towards epitopes that are not visible on the closed conformation of Env. Env-based immunogens that fail to adopt the closed trimeric conformation drive preferential elicitation of non-neutralizing antibodies (nnAbs) [9–11] or antibodies that can only neutralize tier-1 viruses, irrespective of the virus tier from which the Env immunogen is derived. Although nnAbs and tier-1 neutralizing antibodies are easy to elicit, they are generally not protective against tier 2 circulating isolates, based on efficacy trials in humans to date (discussed in detail in sections below). In contrast, broadly neutralizing antibodies (bnAbs), isolated from some HIV infected patients, can neutralize a wide range of circulating tier 2 and 3 HIV strains [12]. BnAbs provide robust protection against viral challenge in animal models via passive immunity, and suppress viral load and rebound in both animals and humans [13,14].
While bnAbs have impressive potency, bnAbs among HIV+ individuals are uncommon, heavily mutated, acquire difficult somatic hypermutations such as insertions and deletions, may exhibit polyreactivity to autoantigens, and take longer to develop compared to neutralizing antibodies against common pathogens [12,15]. The elicitation of bnAbs by vaccination is an arduous task, and a substantial number of recent Env-directed immunogen design efforts focus on obtaining vaccine-elicited bnAb responses in a rational manner. In animal models, many of these stabilized soluble Env immunogens representing the closed conformation have demonstrated their ability to generate immunogen-matched tier 2 autologous neutralizing responses, and in some cases, weak heterologous tier 2 responses. Each of these topics is discussed in detail later in this review.
Many candidate HIV vaccines also focus on the elicitation of robust T cell immunity. A subset of HIV+ individuals are able to control the infection, maintaining low viral replication and sustained CD4 T cell counts without ART intervention due to strong CD8 T cell responses [16–18]. Using a rhesus cytomegalovirus (CMV) based CD8 T cell vaccine, ~50% of immunized non-human primates (NHPs) have reproducibly demonstrated robust viremic control following challenge with simian immunodeficiency virus (SIV) infection [19,20], highlighting the potential of T cell vaccines. This CMV vaccine was recently entered into a human phase 1 clinical trial (VIR-1111, NCT04725877). Protective virus-specific CD8 T cell responses most commonly target conserved regions within internal proteins such as the structural Gag protein [21–23], eliminating N-linked glycosylation of Env as a confounding factor in vaccine design. Further, unlike bnAb epitopes that have highly complex tertiary and quaternary structures, T cell epitopes are linear peptide sequences. Hence, T cell vaccines may be more effective in eliciting broadly protective responses. Additionally, because CD8 T cells target infected cells, T cell-focused vaccines are being developed as prospective therapeutic vaccines, as well as prophylactic vaccines. Novel T cell vaccines designed to elicit cross-clade conserved cytotoxic responses are also under development, several of which are being clinically evaluated for both therapeutic and preventative use. Approaches combining both bnAb and CD8 T cell vaccine modalities will also be exciting to explore, as both approaches have matured substantially in recent years [24].
Here, we summarize the HIV vaccine efficacy trials to date, recent phase 1 clinical trials (initiated within the last three years), and preclinical immunogens likely to progress to future trials.
2. History of HIV vaccine efficacy trials
In the long history of HIV vaccine development, seven candidate vaccines have proceeded to efficacy trials. The first of these were the recombinant gp120-based AIDSVAX trials, VAX003 [25] and VAX004 [26], aimed at eliciting neutralizing antibody responses (nAbs). VAX003 tested for vaccine efficacy in preventing blood borne transmission among injection drug users in Thailand, and VAX004 was designed to determine efficacy in the prevention of sexually transmitted HIV, primarily among men who have sex with men, and some heterosexual women in North America and the Netherlands. Each AIDSVAX® vaccine was a bivalent recombinant gp120 vaccine adjuvanted with aluminum hydroxide (alum) tailored for the specific regional transmitter founder virus subtypes for the two trials; AIDSVAX® B/E in the VAX003 being composed of gp120 from subtype B MN and subtype CRF01_AE A244, whereas AIDSVAX® B/B tested in VAX004 was composed of gp120 proteins from two subtype B strains, MN and GNE8. In both studies, the recipients generated antibody responses to the immunization-matched gp120 strain and neutralization of the tier 1 virus strain MN, but lacked broader neutralizing antibodies and lacked efficacy in reducing transmission [25,27,28].
Several HIV vaccine trials focused on eliciting T cell mediated cellular immunity. STEP (HVTN502) carried out across several global sites, and Phambili (HVTN503) taking place in South Africa, were phase 2b clinical studies testing the MRKAd5 trivalent vaccine developed by Merck. This was a replication-deficient Adenovirus serotype 5 (Ad5) vectored vaccine consisting of Gag, Pol and Nef genes. The STEP trial was prematurely terminated when interim analysis of the data demonstrated increased susceptibility to HIV-1 infection among those vaccinated relative to those receiving the placebo [29], which in turn led to the early termination of the Phambili trial. A long term follow up of both the STEP and Phambili participants confirmed an increased incidence of HIV-1 infection among those who were vaccinated [30,31]. This was thought have been related to increasing adenovirus-specific CD4 T cells at mucosal sites, which became HIV targets [32,33].
HVTN505 was a phase 2b multi-site efficacy trial that took place in the United States and assessed the efficacy of an HIV vaccine candidate which consisted of a prime containing six DNA plasmids (Gag, Pol, Nef, and three gp145 Envs each from clades A, B and C). This was followed by a boost with four Ad5 vectors eah expressing a Gag-Pol fusion protein, and Env from clades A, B, and C [34]. The vaccine elicited CD4 and CD8 T cell responses to at least one antigen in the vaccine in ~66% of the participants, and all participants generated an IgG response to an Env component in the vaccine. However, interim analyses showed a lack in protective efficacy and the trial was terminated early.
The only efficacy trial to demonstrate any level of protection was the RV144 trial that took place in Thailand, chronologically initiated between the AIDSVAX and STEP/Phambili trials. The RV144 tested a heterologous prime-boost combination, priming with the canarypox vectored ALVAC-HIV vaccine expressing Env, Gag and Pro (vCP1521), followed by Env protein boost with the recombinant gp120 protein vaccine, AIDSVAX B/E, used in VAX004 [35]. The vaccine yielded a modest efficacy of 31% by one metric, although statistical conclusions for the study were controversial [36,37]. Among participants that acquired HIV, the vaccine had no impact on viral load or CD4 T cell counts [35]. Follow up immune correlates analyses observed V1V2-directed IgG nnAbs, and Env IgG3 responses were associated with reduced risk of infection [38–40]. Polyfunctional (expressing multiple cytokines) CD4 T cell subsets also correlated with reduced risk of infection [41]. These outcomes provided the foundation for the more recent HVTN702 trial.
3. Recent and ongoing efficacy trials
3.1. HVTN702
The seventh efficacy trial was the phase 2b/3 trial HVTN702, also known as the Uhambo trial (NCT02968849), conducted in South Africa. HVTN702 was a follow up of the RV144 trial, assessing the immune response to ALVAC-HIV primes followed by recombinant gp120 protein boost, with modifications to accommodate primary circulating subtypes in South Africa. The ALVAC-HIV prime (vCP2438) in HVTN702 is identical to vCP1521 used in the RV144 trials less the CRF01_AE subtype (92TH023) gp120 insert replaced by a regionally dominant subtype C gp120 insert (96ZM651). The recombinant protein boost contained two subtype C gp120s, from isolates TV1.C and 1086.C. Additionally, the alum adjuvant originally used in the RV144 trial was replaced with the oil-in-water emulsion adjuvant MF59, which elicits stronger responses than alum. Two related phase 1/2a trials, HVTN107 (NCT03284710) and HVTN120 (NCT03122223), comparing alum with MF59, and MF59 with AS01B as adjuvants respectively, were completed late 2019 and mid 2020 (Table 1).
Table 1.
Immunogen | NCT Trial number | Other names | Phase | Adjuvant | Completion Date* |
---|---|---|---|---|---|
ALVAC-HIV (vCP2438), bivalent subtype C gp120 | NCT03284710 | HVTN107 | 1/2a | Alum and MF59 comparison | Dec 2019 |
ALVAC-HIV (vCP2438), bivalent subtype C gp120 | NCT03122223 | HVTN120 | 1/2a | MF59 vs AS01B | Jul 2020 |
ALVAC-HIV (vCP2438), bivalent subtype C gp120 | NCT02968849 | HVTN702/Uhambo | 2b/3 | MF59 | Aug 2021; prematurely terminated |
Ad26.Mos4.HIV, subtype C gp140 and/or mosaic gp140 | NCT02935686 | ASCENT/HVTN118/HPX2003 | 1/2a | Alum | Jan 2022 |
Ad26.Mos4.HIV, subtype C gp140 | NCT03060629 | HVTN705/Imbokodo | 2 | Alum | Jul 2022 |
Ad26.Mos4.HIV, bivalent subtype C gp140 and mosaic gp140 | NCT03964415 | HVTN706/Mosaico | 3 | Alum | Mar 2024 |
Actual or predicted completion date
HVTN702 was preceded by the phase 1/2 HVTN100 trial (NCT02404311) that confirmed the safety and immunogenicity of the vaccine [42]. The immunogenicity outcomes were largely analyzed against factors identified as correlates of protection in the RV144 trial. All participants developed IgG titers specific to all gp120 components in the vaccine and had >3-fold improvement in median IgG binding titers compared to RV144 participants against gp120 antigens matched for both the ALVAC-HIV and gp120 protein vaccine components. Total IgG3 titers and percent responders to the vaccine-matched gp120s were also greater among HVTN100 participants, and antibody responses to V1V2 were observed. Again, while high anti-gp120 titers were elicited, neutralizing responses were not detected against tier 2 viruses. Relative to RV144, a greater proportion of HVTN100 vaccinated individuals also generated vaccine-matched Env-specific CD4 T cell responses, and with higher magnitude based on cytokine expression. On the basis of high immunogenicity to the vaccine antigens, and acceptable immune responses related to correlates of protection interpreted from the RV144 trial, the regimen progressed to the HVTN702 efficacy trial in 2016. Unfortunately, interim analysis demonstrated that an equivalent proportion of vaccine and placebo recipients became infected with HIV. The vaccine was deemed not efficacious and the study was halted early in February of 2020 [43].
3.2. HVTN705 (Imbokodo) and HVTN706 (Mosaico)
HVTN705/Imbokodo (NCT03060629) and HVTN706/Mosaico (NCT03964415) are two currently ongoing efficacy trials. Both trials are designed to assess an adenovirus vector prime with recombinant Env protein booster immunizations. Imbokodo is an ongoing phase 2b clinical trial among heterosexual female participants in Sub-Saharan Africa initiated in 2017, whereas Mosaico is a more recently started large scale multi-center trial, currently recruiting participants in eight countries, including the USA.
Several adenoviruses were tested to circumvent issues linked to preexisting Ad5 seroprevalence, of which adenovirus serotype 26 (Ad26) was one of the candidates developed as an improved recombinant Ad vector candidate [44]. The HVTN705 and 706 studies use an Ad26-vectored tetravalent vaccine (Ad26.Mos4.HIV) which contains equal parts of two distinct mosaic Gag-Pol Ad26 vectors and two mosaic Env Ad26 later followed by Env gp140 protein boosts (monovalent in Imbokodo, bivalent in Mosaico). Mosaic antigens are computationally recombined HIV sequences to optimize coverage of HIV protein sequence diversity [45] and designed to elicit stronger and broader T cell responses than consensus or single native isolate sequence constructs [46]. Assessment of Ad26 mosaic vaccines in rhesus monkeys in challenge studies demonstrated some protection against repeated heterologous SHIV challenges [47], which could be improved by the addition of protein Env gp140 boosts [48]. Protection in monkeys was associated with Env binding antibodies [49].
The tetravalent Ad26.Mos4.HIV vaccine improves upon the trivalent Ad26.Mos.HIV vaccine that was tested in the phase 1/2a APPROACH study (NCT02315703) and NHPs [50], and elicited superior antibody and antigen-specific CD4 T cell responses in the phase 1/2a TRAVERSE study compared to the trivalent vaccine [51]. The Ad26 tetravalent vaccine-Env gp140 (subtype C, 97ZA012) regimen did not elicit nAbs other than against the MW965.26 tier 1 virus. This was expected, as elicitation of tier 2 nAbs generally requires native-like Env trimer antigens. The vaccine does not express an Env design with mutations known to be required for native-like Env trimer folding and stability (see sections below on immunogen design). It generated gp120 V1V2-directed IgG binding responses and autologous subtype C Env-specific IgG3 in 66% of those that received four doses of the tetravalent vaccine [51]. Tier 2 neutralizing antibodies were not reported. The primary study completion dates for HVTN705 and HVTN706 are projected to be in mid 2022 and early 2023, respectively. The phase 1/2a Ascent study (NCT02935686) will test a similar regimen (Table 1).
4. Virus vectored and DNA vaccines currently in early phase trials
One major advantage of nucleotide and virus vectored vaccines compared to protein subunit vaccines is that they can elicit both CD8 T cell and humoral immunity. Vaccines with the primary goal of eliciting CD8 T cell mediated responses have focused on the discovery and utilization of better viral vector constructs. Moreover, early studies including clinical trials such as RV144, demonstrated that a heterologous prime-boost approach, specifically a vectored/DNA vaccine prime followed by protein boost, enhanced the magnitude and quality of immune responses relative to a single format vaccination approach. As such, many groups directed efforts to improve upon heterologous prime-boost approaches by optimizing both the DNA or viral vectored prime and protein boost components, including the development of novel Ad vectors. The HVTN702, HVTN705 and HVTN706 trials discussed above are a few examples of this strategy. The following sections describe additional recently initiated early stage trials evaluating DNA and viral vectored vaccines (Table 2).
Table 2.
Immunogen | NCT Trial number | Other names | Phase | Adjuvant | Completion Date* |
---|---|---|---|---|---|
Prime: Ad4-Env CN54, MVA-CN54, Boost: CN54 gp140 | NCT03408262 | Ad4HIV | 1 | With protein boost: MPLA | Feb 2020 |
p24CE1/2 DNA, p55gag DNA | NCT03181789 | HVTN119 | 1 | IL-12 via DNA | Apr 2020 |
ChAdOx1.tHIVconsv1, MVA.tHIVconsv3, MVA.tHIVconsv4 | NCT04586673 | HIV-CORE0052 | 1 | Oct 2021 | |
Prime: Polyvalent DNA with subtype A/B/C/AE gp120 + Gag Boost: Tetravalent gp120 protein from subtypes A/B/C/AE |
NCT03409276 | HVTN124 | 1 | With protein boost: GLA-SE | Nov 2020 |
ChAdOx1.HTI and MVA.HTI | NCT04563377 | HIV-CORE0051 | 1/2a | Oct 2021 | |
ChAdOx1.tHIVconsv1, MVA.tHIVconsv3, MVA.tHIVconsv4 | NCT04553016 | HIV-CORE006 | 1 | Jun 2022 | |
Prime: Ad4-Env145NFL or Ad4-Env150KN Protein boost: 4571 gp140 trimer |
NCT03878121 | 19-I-0069 | 1 | With protein boost: Alum | Apr 2024 |
HCMV vectors expressing Gag, Rev/Tat/Nef, Pol, Env | NCT04725877 | VIR-1111–2001 | 1a | Dec 2024 |
Actual or predicted completion date
4.1. Replication-incompetent virus vectored vaccines
Certain simian Ad vectors were found to be nearly as immunogenic as the human Ad5 vector, whereas the majority of other human adenoviruses with rarer seroprevalence tended to be less immunogenic [52]. The chimpanzee adenovirus (ChAd) isolate Y25 derived virus vector ChAdOx1 [53], is used as the vector for the development of several HIV vaccines in trials started this year (Table 2). A ChAdOx1 vectored SARS-CoV2 vaccine developed recently was generally well tolerated, elicited substantial T cell responses and nAbs, and demonstrated ~70% efficacy against COVID-19 [54,55].
There are three planned clinical studies utilizing a ChAdOx1/MVA (modified vaccinia virus Ankara) vectored vaccine combination regimen designed to elicit HIV-specific T cell responses. These vectors have chimeric T cell epitope inserts, referred to as tHIVconsvX variants (NCT04586673 and NCT4553016) or HIVACAT T-cell immunogen (HTI) (NCT04563377). The inserts consist of short linear segments of epitopes from the HIV proteome that are largely conserved and associated with viral control in HIV-1 infected individuals [56–59].
HTI is a rationally designed mosaic polypeptide sequence from Gag, Pol, Vif, and Nef proteins [57]. In mice and monkeys, CD4 and CD8 T cell responses to multiple regions within HTI were observed [57]. The HTI vaccine progressed to a phase 1 clinical trial (NCT04563377) to evaluate if it can elicit CD8 T cell responses to protective epitopes in humans.
The first generation HIVconvs immunogen was tested in humans in several delivery platforms, including as a DNA vaccine, ChAdV63 and MVA vectored vaccines (HIV-CORE 002, NCT01151319). The vaccine elicited CD8 T cell responses against multiple regions, and CD8 T cells from vaccinated individuals could inhibit autologous CD4 T cell infection by viruses from multiple clades to varying degrees [60]. The second generation tHIVconsvX constructs were modified to maximize inclusion of beneficial epitopes identified in HTI. The numbered tHIVconsvX constructs differ in the order in which the linear epitopes are stitched together, and denote two different mosaic variants that account for two most common epitope variants within the covered regions [58]. Two additional studies will evaluate these constructs. The first will compare responses in participants that only receive the ChAdOx1.tHIVconsv1 vaccine to those that receive ChAdOx1.tHIVconsv1 along with MVA.tHIVconsv3 and MVA.tHIVconsv4 (NCT04586673). In a second, larger study, participants will receive ChAdOx1.tHIVconsv1 as the initial vaccine dose followed by MVA.tHIVconsv3 and MVA.tHIVconsv4 at a later time point. These studies do not have an Env component and therefore will not rely on antibody responses for protective efficacy. These studies will be proof-of-concept studies for eliciting human T cell responses to conserved HIV epitopes with these vaccine formats.
4.2. Replication-competent virus vectored vaccines
There are two replication-competent Ad4 vectored vaccine studies for HIV: Ad4HIV (NCT03408262) taking place in the UK and 19-I-0069 (NCT03878121) in the US. A replication competent Ad4 vectored H5N1 influenza vaccine in humans [61], and an Ad4 vectored Env vaccine derived from subtype C strain 1086 in mice [62] elicited vaccine-specific T cell responses, and antibody titers were observed in response to Ad4 vaccine immunization followed by boost immunization with inactivated H5N1 vaccine in humans [61] or Env gp140 in rabbits [62]. The Ad4 study will evaluate multiple different combinations of an orally administered Ad4 vectored CN54 Env (Ad4-Env CN54) prime, followed by boosting with replication-incompetent MVA vectored CN54 Env (MVA-CN54) and/or recombinant protein CN54 gp140, to assess which boosting option can generate most optimal protective antibody responses. These vaccines do not encode HIV Env with stabilizing mutations known to express as native trimers (see sections below).
The 19-I-0069 study assesses the safety and immunogenicity of the priming of two different Ad4 vectored vaccines, Ad4-Env145NFL and Ad4-Env150KN, followed by boost with soluble protein Env trimer 4571 (described in section 5.1). The Env150KN construct encodes an Env that has a mutated cleavage site [62], whereas Ad4-Env145 NFL encodes a native-flexibly linked (NFL) Env trimer. NFL trimers are not cleavage dependent but harbor a long linker between gp120 and gp41 that has been demonstrated to allow for quaternary folding that reflects the structure of native cleaved Env trimers [63]. NFL Env trimers can elicit tier 2 nAb responses in animal models, consistent with other Env immunogens with proper native Env trimer structure (see section 5.1).
4.3. DNA Vaccines
The HVTN119 study (NCT03181789) features a Gag-directed vaccine designed to elicit protective CD8 T cell responses. Like the rationale for developing conserved and mosaic inserts in the ChAdOx vaccines, the p24CE vaccine was designed such that only epitopes derived from cross-clade conserved elements (CE) in p24gag are incorporated in the DNA vaccine. Mice and NHPs immunized with the p24CE DNA vaccine were more likely to develop CD8 T cell responses and overall T cell responses to CE epitopes relative to those immunized with full length p55gag DNA [64,65]. This suggests that the full length p55gag has immunodominant epitopes distracting responses away from conserved CE epitopes. The prime-boost regimen involving a p24CE DNA prime followed by p24CE+p55gag DNA boost was defined in a subsequent NHP study[66], where a dual p24CE construct (p24CE1 and p24CE2), each expressing two common sequence variants of the CE epitopes, was made. The study also incorporates an IL-12-expressing DNA plasmid as the adjuvant, which has been suggested to improve T cell responses in a dose dependent manner in some human DNA vaccination studies [67–69], but not in others [70]. As in the HTI and tHIVconsX construct immunization studies, the primary question to be answered in a human phase 1 trial would be whether this vaccination strategy can generate T cell responses to conserved, broad epitopes in humans.
A previous phase 1 clinical trial DP6–001 (NCT00061243) in the early 2000s assessed a vaccine consisting of three doses of a hexavalent (pentavalent gp120 from multiple subtypes and monovalent subtype C Gag) DNA prime followed by one or two pentavalent gp120 protein boosts [71]. In this study, while high anti-gp120 titers were observed, T cell responses measured by IFNg production were low, except in the high DNA prime dose group. Overall, there were low neutralizing serum titers to the 5 autologous viruses used in the vaccine. With the expansion of available curated Env sequences, the original DP6–001 formulation was improved upon by screening additional Envs in rabbits and selecting gp120s that induced the greatest breadth, albeit at extremely low titers (1:10) [72]. Four of the original five gp120 sequences in the DP6–001 vaccine were replaced. The newly formulated vaccine induced improved neutralizing titers and V1V2 biding Ab titers relative to the original DP6–001 regimen in rabbits. In the same study, bioinformatics analysis suggested that a tetravalent formulation consisting of their newer subtype A, B, C, and AE gp120 constructs were sufficient to cover consensus sequences of all HIV-1 subtypes. The HVTN124 (NCT03409576) is designed to assess the updated tetravalent gp120-based vaccine formulation.
5. Innovation in Env-based immunogen design
As the above efficacy trials have shown, previous Env protein vaccine candidates have been unsuccessful in eliciting nAbs against tier-2 clinical isolates. Assessment of past trials strongly indicates that tier 1 neutralizing activity and Fc-mediated nnAb effector functions do not consistently correlate with protection in humans. More broadly reactive antibodies against tier 2 viruses is likely to be necessary for robust protection by antibodies. In the last decade, a plethora of bnAbs targeting distinct epitopes on Env have been isolated from chronically infected HIV-1 patients, several of which demonstrate extraordinary breadth and potency [12].
Elicitation of bnAbs by vaccination remains a significant challenge. Longitudinal and antibody development pathway prediction studies have a large number of mutations are required before most bnAb clonal lineages develop breadth [12]. Some bnAbs and their developmental intermediates can be polyreactive [73–76] which may lead to negative selection. Further, when the human B cell repertoire was directly probed for the presence of naïve precursors to specific bnAb-classes such as those in the VRC01-class and BG18-class (described in further detail in section 5.2), it was found that bnAb precursor naïve B cells are present in most people, but they are rare [77–79]. Hence, the activation of the proper bnAb precursor B cells by vaccination is a major hurdle to overcome. The current generation of immunogen designs take these various factors into account, to varying degrees, in attempting to elicit bnAbs, discussed below.
5.1. Env trimer immunogens
Presenting the Env molecule in conformations other than the native, prefusion form often drives non-neutralizing responses directed towards relatively glycan-free surfaces, which are not broadly neutralizing sites [9,10]. Many early recombinant gp140 trimers incorporated a non-cleavable mutation in the native furin cleavage site to prevent dissociation of gp120, but these trimers do not elicit potent tier 2 neutralizing antibodies [80–82]. It was later described that in uncleaved trimers, the gp120 subunits adopted open conformations, exposing non-neutralizing epitopes similar to those on monomeric gp120 subunit proteins[83,84]. As a result, intensive efforts led to the design of soluble Env trimers that stably adopt the prefusion, closed conformation.
One prefusion trimer that garnered excitement was the SOSIP.664 trimer. This trimer retains the furin cleavage site, but incorporates an engineered disulfide bond between the gp120 and gp41 subunits (SOS) to prevent subunit dissociation, along with a I559P helix-breaking mutation in gp41 heptad repeat 1 (HR1) that helps maintain the trimer in the prefusion conformation [85–89]. The SOSIP.664 trimer based on the sequence of a subtype A virus BG505 [90] was particularly stable [91] and demonstrated an excellent antigenicity profile – binding bnAbs while having reduced or minimal binding to nnAbs [92]. The stable BG505 SOSIP.664 trimer allowed for the first set of high-resolution structures to be determined for the complete pre-fusion Env ectodomain[87–89], which was later shown to be nearly identical to a wildtype Env trimer [93]. The SOSIP stabilizing mutations were also shown to be compatible with several other Env variants [6,94–96], and results in a glycosylation profile similar to membrane-expressed Envs [97–100]. Importantly, BG505 SOSIP.664 was the first Env protein vaccine to elicit robust tier 2 neutralizing antibodies in animal models (rabbits and NHPs) [101], promoting the development of a myriad of prefusion stabilized soluble native-like Env trimers. Several preclinical animal models using various SOSIP-type recombinant trimers have reproducibly elicited tier 2 neutralizing antibody responses [101–105]. Prefusion Env trimer immunogens continue to undergo further development to tackle issues related to in vivo immunogen stability and non-bnAb class immunodominant responses, as will be discussed below. Several Env trimer immunogen candidates are currently in phase 1 clinical trials for initial immunogenicity assessment in humans.
Multiple phase 1 clinical trials are testing soluble prefusion Env ectodomain trimers (Table 3), including the original BG505 SOSIP.664 trimer (IAVI W001, NCT03699241). The formulation of the vaccine in the IAVI W001 trial uses the MPLA/QS-21 adjuvant AS01B, which has been used in the development of the RTS,S malaria vaccine [106] and the recent very successful herpes zoster vaccine [107]. A second clinical trial involving the BG505 SOSIP.664 trimer proposes to test the immunogen formulated with various TLR agonists (HVTN137, NCT04177355). Numerous HIV Env vaccination preclinical studies discussed in this section have been performed with ISCOM-type adjuvants containing saponin, which has not yet been licensed for use in humans. However, Novavax recently reported a successful COVID-19 vaccine using their ISCOM-type adjuvant, Matrix-M1, which was safe and well tolerated [108].
Table 3.
Immunogen | NCT Trial Number | Other Trial names | Phase | Adjuvant | Completion Date* |
---|---|---|---|---|---|
C.6980 gp145 trimer | NCT03382418 | HVTN122 | 1 | Alum | Sep 2019 |
BG505 SOSIP.664 gp140 trimer | NCT03699241 | IAVI W001 | 1 | AS01B | May 2020 |
4571 gp140 Trimer | NCT03783130 | 19-I-0031 | 1 | Alum | Aug 2020 |
BG505 SOSIP.664 gp140 trimer | NCT04177355 | HVTN137 | 1 | Comparison of 3M-052-AF, CpG 1080, GLA-LSQ, and Alum | May 2022 |
ConM SOSIP.v7 gp140 trimer | NCT03961438 | ACTHIVE-001 | 1 | MPLA Liposome | Nov 2022 |
Actual or predicted completion date
Early SOSIP.664 immunization studies in animals indicated that SOSIP-type native-like trimers still underwent some amount of degradation or exhibited conformational breathing[6], based on the observation that one of the immunodominant sites being targeted by Env antibodies after SOSIP immunizations, was the V3 loop [101,103,109]. This epitope is concealed on the prefusion Env trimer; the tip of the V3 loop normally becomes exposed upon conformational opening of the Env trimer following binding to CD4 [110–112]. Certain V3 loop Abs are capable of neutralizing tier 1 viruses and can demonstrate breadth against open tier 1 trimers, but V3 loop Abs are not potent against tier 2 HIV isolates [4,113] where Env is less prone to transiently expose the coreceptor binding site [5]. To ameliorate this issue, the next round of trimer designs opted to further stabilize the prefusion conformation of the trimer [102,114–116].
The 4571 trimer, also referred to as DS-SOSIP, is a stabilized BG505 SOSIP.664-derived gp140 trimer currently in a phase 1 trial (NCT03783130). The addition of a 201C-433C intramolecular disulfide bond in gp120 reduced V3 loop exposure and V3 loop mAb binding in vitro, even in the presence of soluble CD4 [117]. However, immunization of guinea pigs with the 4571 trimer and further stabilized variants of DS-SOSIP showed that majority of the DS-SOSIP variants elicited similar levels of V3 directed responses as the original BG505 SOSIP.664 trimer. Neutralization to the autologous BG505 virus trended towards improvement among the DS-SOSIP variants relative to the original BG505 SOSIP.664 [118]. Heterologous tier 2 neutralization was not observed, consistent with most SOSIP-type Env trimer immunization studies. A different Env trimer design have instead incorporated CD4 binding site (CD4bs)-knockout mutations [114] to prevent trimer opening upon engaging CD4 present on CD4 T cells.
A second concern observed among Env trimer immunized animals, including SOSIP-type trimers, has been that immunodominant autologous neutralizing responses commonly occur to strain-specific ‘glycan holes’. Immunization with a single Env trimer, or sequentially/co-immunizing with a mixture of Env trimers derived from different viruses, commonly elicits responses to strain-specific glycan holes [105,119–122]. Most N-linked glycosylation sites are conserved across all HIV isolates, but certain viruses exhibit strain-specific loss of glycosylation sites. The missing glycan opens up a more easily targetable protein epitope, and much of the tier 2 autologous responses to Env trimers have been observed to be directed to these strain-specific glycan holes [102,104,105,123,124]. To counter the issue of isolate-specific immunodominance, an HIV-1 group M consensus Env sequence derived SOSIP.664 trimer was developed [125]. This ConM SOSIP.v7 trimer is under phase 1 clinical trial (NCT03961438). In addition to its consensus Env sequence, the ConM SOSIP.v7 trimer also incorporates several mutations to enhance trimer stability. Preclinical studies were carried out in rabbit and rhesus monkeys, with the latter being immunized with a ferritin nanoparticle multimerized version of the Env trimer immunogen. In both studies, animals did not develop tier 2 neutralizing antibodies [125]. Reduced V3 loop directed serum Ab responses as well as reduction in heterologous tier 1 virus neutralization were observed, suggestive of stabilizing mutations incorporated in the trimer design successfully limiting the exposure of some of these undesired epitopes. Because the BG505 Env trimer has well characterized glycan holes, comparisons between ACTHIVE-001, IAVI W001, and 19-I-0031 studies will inform the impact of glycan hole driven immunodominance in human B cell responses.
The development of cleavage-independent stabilized prefusion trimers has also been accomplished. NFL trimers [63,126,127] (used in NCT03408262) and uncleaved prefusion-optimized (UFO) trimers [128] incorporate a flexible linker between the gp120 and gp41 subunits in place of the furin cleavage site. Like SOSIP, these designs also have a proline mutation in gp41 HR1. These trimers also have demonstrated the capability to elicit tier 2 autologous neutralizing responses [102,129,130].
A C.6980 gp145 trimer [131] is the sole Env trimer protein-only vaccine currently in phase I trial (NCT03382418) that is not designed with prefusion Env stabilizing mutations. This trimer design was based on a subtype C Env sequence from viral isolate CO6980v0c22 to account for subtype C strains dominating Sub-Saharan Africa. It remains uncertain whether this trimer truly adopts the prefusion conformation, as its antigenicity profile shows binding to 17b, a V3 mAb, while the binding of quaternary-specific bnAbs could not be tested due to the fact the parent virus strain is resistant to neutralization by prefusion epitope specific antibodies such as PGT145 [132] and PGT151 [133,134]. A substantial proportion of the C.6980 Env trimer exhibited non-native conformations when analyzed by electron microscopy [131]. Assessment of immunogenicity in rabbits only demonstrated neutralization of tier 1 isolates; no tier 2 neutralization was observed [131].
The immunogenicity of near-native Env trimers in humans is unknown, but should be reported in the near future. Of note, none of these initial Env trimer clinical trials are expected to elicit heterologous (broad) tier 2 responses. The primary scientific goal of these trials is to answer whether the tier 2 autologous nAb responses observed in NHPs, rabbits and guinea pigs can be recapitulated in humans. It will also be of interest to elucidate potential issues related to epitope response hierarchies. For example, the Env trimers used in these trials do not integrate strategies to reduce responses to the base of the trimer. The Env trimer base is a non-neutralizing set of neoepitopes arising from the truncation of the trimer at the ectodomain, and it has been shown that the base is highly immunodominant in animal models [9,104,109,124,135,136].
5.2. BnAb germline-targeting immunogens
One strategy to overcome immunodominance is to target the activation of specific bnAb-class naïve B cells in the priming immunization. This is a challenging task. In addition to bnAb precursor B cells being rare, many inferred germline (iGL) variants of bnAbs typically do not bind wildtype Env immunogens [137–139]. Germline-targeting (GT) immunogens [140] are specifically engineered such that certain classes of iGL bnAbs can bind with much higher affinity than they would to a wildtype gp120 or Env trimer protein. In this manner, the goal of GT priming is to initiate activation and proliferation of specific precursor bnAb-class B cells. Subsequent immunizations then would use a series of immunogens that sequentially become more representative of native Env trimer to shepherd maturation of the antibody response to full HIV bnAb development [141]. Two GT immunogens are currently in phase 1 trial (Table 4), along with several additional promising GT immunogens in preclinical development, discussed below.
Table 4.
Immunogen | NCT Trial Number | Other Trial names | Phase | Adjuvant | Completion Date* |
---|---|---|---|---|---|
eOD-GT8 60mer | NCT03547245 | IAVI G001 | 1 | AS01B | Dec 2020 |
MPER-656 liposomes | NCT03934541 | HVTN133 | 1 | Alum | Jun 2021 |
BG505 SOSIP GT1.1 gp140 trimer | NCT04224701 | IAVI C101 | 1 | Unspecified | Jul 2022 |
CH505TF gp120 | NCT04607408 | HVTN135 | 1 | GLA-SE | Oct 2022 |
Longitudinally derived CH505TF gp120 variants | NCT03220724 | HVTN115 | 1 | GLA-SE | Jul 2023 |
Actual or predicted completion date
GT immunogens to the CD4bs have particularly garnered strong interest, because highly potent CD4bs bnAbs, referred to as the VRC01-class of bnAbs, have been isolated in several independent donors. Equally important, VRC01-class bnAbs have a very well-defined set of B cell receptor (BCR) characteristics. Namely, VRC01-class bnAbs are defined by the use of a IGHV1–2 heavy chain V gene and a 5-amino acid residue light chain complementarity determining region (CDR) 3 [142–144]. VRC01-class bnAb targeting immunogen. eOD-GT8 is a minimalistic CD4bs presenting immunogen consisting of an engineered outer domain (eOD) of gp120. The eOD-GT variants were designed to have extremely high affinity to multiple VRC01-class iGL antibodies [77,138]. The eOD-GT8 immunogen has been successfully used as a probe to isolate authentic VRC01-class naïve peripheral B cells from healthy donors [77,78] (unlike the earlier iterative design, eOD-GT6, with lower affinity to iGL antibodies than eOD-GT8) [77], demonstrating that eOD-GT8 can selectively engage VRC01-class naïve B cells in a large pool of irrelevant B cells in humans. Immunoglobulin (Ig)-humanized mice [145] and various VRC01-class precursor B cell receptor (BCR) knock-in (KI) mice [146–154] were all capable of generating VRC01-class B cell responses upon immunization with eOD-GT8 60mer and related eOD-GT variants. VRC01-class responses elicited by eOD-GT 60mers in adoptive transfer mouse models that recapitulate VRC01-class naïve B cell precursor frequencies and affinities represented in humans [149,153], was an indicator supporting that eOD-GT8 60mer is likely to be successful in activating VRC01-class precursor B cells in humans. One recent study using BCR KI mice demonstrated that VRC01 precursors could be matured to breadth by eOD-GT8 60mer priming followed by sequential shepherding [155].
A phase 1 study wherein healthy participants were immunized with eOD-GT8 60mer adjuvanted with AS01B (NCT03547245 / IAVI G001) was initiated in 2018 in the US, to assess whether eOD-GT8 could prime VRC01-class naïve B cells in humans. The preliminary outcome of the study presented at the HIVR4P meeting (Feb 2021) showed robust priming of VRC01-class naïve B cells in all vaccine recipients, demonstrated by an increase in the frequency of eOD-GT8 binding B cells, a large proportion of which harbored IGHV1–2 utilizing BCRs paired with 5-AA LCs [156]. This is the first clinical trial that confirmed bnAb-class precursor B cells can be primed and expanded in healthy humans, and validated that rationally designed GT-immunogens can target a specific set of rare B cells.
A second GT immunogen in phase 1 trial is the BG505 SOSIP GT1.1 trimer (NCT04224701), a slightly modified version of BG505 SOSIP GT1. The BG505 SOSIP GT1 trimer is a BG505 SOSIP.664 based Env trimer that incorporates GT mutations to target two distinct bnAb epitopes, the Env CD4bs and the V1V2 apex [160]. Affinity binding assessment showed enhanced binding of iGL CD4bs antibodies to the GT trimer and a moderate improvement in binding of iGL V1V2 apex antibodies. Germline VRC01 heavy chain KI mice (VRC01gH) that were immunized with BG505 SOSIP GT1 generated CD4bs-directed antibodies that were not observed in mice immunized with the regular BG505 SOSIP trimer. In this study, the CDbs-specific B cells were not directly sequenced to confirm that they were indeed VRC01-class B cells. The affinity (KD) of iGL VRC01 to BG505 SOSIP GT1 is much weaker than to eOD-GT8. It is important to note that authentic human derived VRC01-class naïve B cells have much lower affinity to the GT immunogens than the iGL mAbs used in the design [77,78]. For example, iGL CD4bs mAbs have an average KD in the range of 1–10 nM to eOD-GT8 monomer, but authentic VRC01-class naïve B cell derived mAbs bind eOD-GT8 with a KD in the 1–10 μM range. As germline affinity has been implicated to be an important factor in rare B cell activation [149], the comparison of the ability of BG505 SOSIP GT1.1 versus eOD-GT8 to activate target precursor B cells in humans will enlighten GT immunogen affinity threshold requirements.
426c core is another VRC01-class GT immunogen based on the gp120 sequence of a clade C isolate 426c. It consists of both the inner and outer domains of 426c gp120, with V1V2V3 along with 3 N-linked glycosylation sites at Env N276, N460 and N463 removed [161]. This immunogen in both 4–7mer and 24mer formats were also shown to be capable of activating VRC01 B cells in VRC01gH mice [162], and is planned for evaluation in future clinical studies [152].
The three GT immunogens discussed above all target the Env CD4bs, but promising designs have been published for other broadly neutralizing epitopes. One class of highly potent bnAbs bind in the high-mannose patch of the Env trimer, many of which recognize a highly conserved N-linked high-mannose glycan at position N332 at the base of V3 [132,163–166]. This N332-glycan centric epitope is commonly called the N332 supersite, or the V3-glycan bnAb epitope. N332 bnAbs utilize a long heavy chain CDR 3 (HCDR3) loop, typically 20 amino acid residues in length or greater. The BG505–10MUT trimer [167] was designed to bind lineage reverted variants of PGT121, a highly potent N332 bnAb [132,168]. BG505–10MUT successfully primed PGT121gHL KI mice, where a shepherding sequential immunization approach was able to drive breath inducing SHMs in PGT121gHL B cells [169]. This was the first successful demonstration of bnAb development after immunization [167,169]. Following the discovery of BG18, an N332 bnAb similar to PGT121 but without indels [163], a series of iteratively designed BG505–10MUT immunogens were developed to bind a diverse array of BG18-like germline antibodies, yielding the N332-GT Env trimer series of immunogens [79]. Of these, N332-GT2 Env trimer multimerized as an 8mer was able to activate BG18 precursor B cells in mice in a low precursor frequency adoptive transfer mouse model using BG18gH cells [79]. N332-GT1 and N332-GT2 were successfully used to isolate BG18-like naïve precursors from healthy human donors as well[79], signifying that this GT immunogen, like eOD-GT8, would be a promising clinical candidate. However, the naïve precursor frequency of BG18-like B cells was found to be lower than that of VRC01-class B cells [78,79], thus the priming of N332 bnAb-class B cells in humans is expected to be more challenging than VRC01-class bnAbs.
An Env trimer immunogen called RC1 [170] that targets the N332 site was designed from a BG505 11MUTB base [167], of the BG505–10MUT series of Env trimer immunogens. In this design, the N156 glycan near the N332 site was removed to open up V1-proximal regions around the N332 epitope. Additional modifications were made to generate RC1–4fill, which added N-linked glycans outside of the N332 epitope to reduce other glycan-hole specific responses. Wildtype mice, rabbits and NHPs immunized with RC1 and RC1–4fill trimers (trimers in mice, AP205 VLP presented multimers in rabbits and NHPs) elicited responses targeting the N301 and N332 glycans and the underlying GDIR peptide epitope [168,171,172] of RC1 trimer [170]. Nevertheless, most of the antibodies possessed HCDR3 of average lengths, unlike N332 supersite bnAbs, and thus it remains unknown whether responses to RC1 can be shepherded to develop neutralizing breadth.
5.3. Epitope-focusing immunogens
GT immunogens have the advantage of potentially exhibiting very high affinity to specific classes of bnAb precursors, but may be restrictive in the set of precursor B cells they can activate. On the other hand, epitope-focusing immunogens are designed to target a more diverse repertoire of naïve precursor B cells to a given bnAb epitope. The N156 glycan deletion RC1 immunogen discussed in the above section, for example, was introduced to broaden the range of targeted B cells. This strategy in theory would allow for the priming immunogen to activate a variety of clonal lineages that can bind a given bnAb epitope. All key broadly neutralizing epitopes on Env are currently being targeted by either GT or epitope-focusing strategies, and this section covers epitope-focusing immunogens targeting regions outside of the CD4bs and N332 site.
The membrane proximal external region (MPER) of Env is one of the earliest identified bnAb epitopes. Unlike other bnAb epitopes that consist of a tertiary or even quaternary surfaces for recognition, MPER directed antibodies recognize highly conserved, non-glycan dependent, simple linear peptide segments consisting of the C-terminal end of the Env trimer ectodomain [173–180]. Nonetheless, it is a challenging epitope in vaccine design. One reason is its proximity to the lipid membrane; as a result, both the epitope itself and MPER-directed bnAbs are hydrophobic. MPER bnAbs often engage the phospholipid bilayer along with the MPER epitope, driving polyreactivity exhibited by several MPER bnAbs [73,177,178]. As such, it has been proposed that elicitation of MPER bnAbs may require overcoming tolerance mechanisms [181,182]. One MPER-focused vaccine is the MPER-656 liposome, which consists of gp41656–680 peptide anchored on liposomes via an added hydrophobic peptide sequence [183]. Immunogenicity studies in guinea pigs and rhesus monkeys demonstrated that while MPER-656 liposomes were able to elicit MPER-specific responses, they were unable to elicit 2F5-like (an MPER bnAb) responses alone; a recombinant subtype B JRFL gp140 protein containing MPER and MPER-656 liposomes had to be used together in a prime-boost regimen in order to elicit 2F5-type responses [184]. In a follow up NHP study, a much more aggressive immunization regimen administering multiple immunogens (a combination of recombinant vaccinia virus expressing JRFL gp140, recombinant JRFL gp140 protein, and MPER-656 liposomes mixed with several TLR agonists) still could not break tolerance during affinity maturation, leading to selection against 2F5-like features that allow lipid recognition [185]. HVTN133 is an ongoing phase 1 clinical trial (NCT03934541) that looks to evaluate MPER-656 liposomes in humans.
The V1V2 apex bnAb epitope is a quaternary epitope formed at the Env trimer three-fold axis, and encompasses the V1V2 region from multiple gp120 protomers, also referred to as the trimer apex. As such, V1V2 bnAbs have a stringent Env trimer binding dependency [91,186–189] and are distinct from the RV144 elicited V1V2 nnAbs that bind monomeric V1V2 constructs. Due to its complex epitope specificity, apex bnAb-targeting immunogens have focused on recapitulating the quaternary structure of the Env trimer [190–193]. Several Env isolates have been shown to be neutralized by germline reverted apex bnAbs [190,193]. SOSIP trimers derived from V1V2 iGL bnAb responsive Env sequences [190], or chimeric BG505 SOSIP trimers transplanted with V1V2 regions of those particular Envs [193] are potential immunogen design strategies to elicit V1V2 apex bnAbs. One interesting apex targeting immunogen is an SIV Env SOSIP.664 trimer named MT145K [192]. This immunogen was generated based on the observation that several chimpanzee infecting SIV isolates were cross-neutralized by apex binding bnAbs, whereas they failed to be neutralized by bnAbs targeting other broadly neutralizing epitopes [194]. The MT145K SIV Env trimer retains the epitope specificty for the majority of known HIV V1V2 apex bnAbs and binds iGL variants of several V1V2 bnAbs with measurable affinity, without showing antigenicity at other bnAb epitopes. Theoretically, the only shared epitope between the SIV and HIV Env trimers is the V1V2 apex and therefore, MT145K primed V1V2 targeting B cells can be selectively boosted by subsequent immunizations with HIV Env trimers. In CH01gH (apex-class bnAb) KI mice, two immunizations with the MT145K SOSIP followed by a boost consisting of a trivalent cocktail of iGL V1V2 bnAb binding Env trimers elicited heterologous serum neutralizing antibody titers in a subset of immunized animals [192]. Still, because all V1V2 bnAbs have long HCDR3s including those that have greater than 30 amino acid residues [132,186,195], apex-class bnAb precursors are expected to be rare among mature naïve human B cells. Thus, the impact of precursor frequencies will be a key question that needs to be answered for the viability of this bnAb epitope for HIV vaccine development.
The fusion peptide (FP) of Env is an epitope that has garnered strong interest for several reasons. Like MPER, the FP has high sequence conservation between cross-clade HIV isolates and is a relatively simple epitope primarily consisting of a linear peptide sequence [196]. Several FP binding bnAbs have long HCDR3s [93,197], but length is not a requirement for FP binding or breadth [196]. Of note, a FP targeting vaccine strategy employing several sequential immunizations of FP of varying lengths conjugated to a keyhole limpet hemocyanin (KLH) carrier protein, followed by boosting with BG505 SOSIP.664 trimers is the only vaccination regimen to date that has been able to reproducibly elicit tier 2 heterologous neutralizing antibodies in wildtype mice, guinea pigs and rhesus monkeys [198–200]. While FP mAbs with breadth were isolated, serum antibody titers in immunized monkeys did not have neutralizing breadth against a broad panel of tier 2 strains [198,199]. Thus, FP-specific memory B cells were generated by the immunization, but additional work is needed to drive high neutralizing antibody titers. A human clinical trial evaluating these immunogens is likely to be initiated in 2021 (VRC019 trial) [201].
5.4. Lineage-targeting immunogens
Longitudinal tracking of HIV infected patients from early infection to development broad serum neutralization breadth has made it possible to track viral evolution and the maturation of bnAb lineages from their most likely unmutated common ancestors (UCA) [75,76,164,165,188,195,202–204]. One strategy in designing priming and sequential immunogens is to derive them from Env sequences that likely started specific bnAb lineages in patients [205]. For example, the CH103 and CH235 are two cooperating CD4bs bnAb lineages identified from a longitudinal study of an African patient infected with a clade C virus [75,76,204]. In the studies, the UCA of the two bnAb lineages and the CH505 transmitter/founder (T/F) virus that likely started the antibody lineages were identified. Unlike most iGL antibodies that cannot bind heterologous wildtype Env proteins, the UCA of CH103 and to a weaker extent, CH235, bound CH505 T/F gp120, suggesting that CH505 T/F Env may be suitable as an immunogen capable of initiating CH103-lineage type bnAbs. In NHPs repeatedly immunized with the CH505 T/F gp120, or sequential immunization with CH505 T/F gp120 along with CH505 lineage gp120s derived from additional later time points, did not result in tier 2 neutralizing antibody tiers to CH505 TF, nor B cells with CH103-like HC-LC pairs possibly owing to a lack of sufficient LC V gene homologs in NHPs [206]. A second study that used a CH505T/F gp120:BG505 gp41 chimeric SOSIP Env trimer did not elicit CD4bs tier 2 neutralizing responses in NHPs or rabbits [207]. A third study used a ferritin nanoparticle approach to generate a CH505 trimer-based immunogen with 8 Env trimers per nanoparticle. In NHPs, this approach elicited high tiers of Abs capable of neutralizing a glycan modified CH505 virus (GnT-I−/−, expressing all high-mannose glycans) or G458Y mutated CH505 [208].
There are currently two phase 1 studies evaluating recombinant CH505 T/F gp120 protein as immunogens. HVTN115 (NVT03220724) is designed to test a vaccination regimen similar to a previous NHP study by Wilton et al. [206], comparing repeated immunizations of a single CH505 T/F gp120 immunogen to sequential immunization of CH505 T/F gp120 variants derived from progressive infection time points. A second study, HVTN135 (NCT04607408) proposes to evaluate safety and immunogenicity of CH505 T/F gp120 in infants, possibly based on the observation that infants infected with HIV may generate bnAb responses more often and quicker than adults [209–211]. However, both of these clinical trials use monomeric recombinant gp120 constructs as the immunogen.
6. Delivery strategies
Multiple immunogen candidates continue to be improved, particularly those based on near-native Env trimers. Yet in most cases, animal studies indicate that a good immunogen design alone does not guarantee elicitation of cross-neutralizing responses, or even autologous tier 2 Abs. As such, optimized immunization strategies may be required, using insights from immunology and vaccinology. In this section, we outline immunization strategies that may be apt for development in the administration of upcoming HIV vaccine immunogens in humans.
6.1. Long-lasting antigen retention strategies
In order for B cells to accrue a high number of SHMs, it is imperative that the immunogen and immunization strategy employed induce a robust germinal center (GC) response. Slow but sustained antigen delivery mimics the kinetics following an infection; slow delivery immunization strategies lead to prolonged presentation of antigens by antigen presenting cells (APCs), which enhances GC responses [212]. In several proof-of-concept mouse and NHP studies, the use of non-mechanical osmotic pumps (OP) that steadily release immunogens over time outperformed equivalent doses of conventional bolus injections in terms of the magnitude of the GC response [102,104,109,213]. In NHPs, OP immunized animals also had increased Env-specific GC T follicular helper (TFH) cells, BG505 Env binding titers, and elicited robust autologous neutralization titers [102,104]. A second slow delivery strategy is dose escalation (DE). In this strategy, one full vaccine dose is divided across multiple injections, gradually increasing the quantity of antigen given per successive injection [213]. Like animals immunized via OPs, NHPs immunized by DE had superior GC responses, Env specific serum binding, and autologous tier 2 neutralization compared to conventional immunization [104]. Notably, NHPs immunized by both slow delivery methods developed antibody responses targeting a wider range of distinct epitopes, whereas conventional immunization resulted in limited Ab epitope diversity, largely targeting the immunodominant trimer base and a glycan hole [104]. Thus, slow or extended antigen delivery strategies are promising for driving improved neutralizing antibody responses.
A third innovation for delivery is the use of phosphoserine (pSer) linkers conjugated to the protein antigen of choice. It was demonstrated that conjugated pSer moieties on protein immunogens results in strong adsorption of the immunogen onto aluminum hydroxide via ligand exchange between the phosphate groups and hydroxyls on alum [214]. This resulted in a true alum mediated depot mechanism, with antigen being retained up to two weeks at the injection site. Further, the pSer-Ag:alum complex promoted co-uptake of alum and immunogen by B cells, and enhanced the upregulation of genes important for interactions with cognate CD4 T cells [214]. An important feature that distinguishes this strategy from the other slow delivery strategies is that the presented protein orientation can be controlled by the location of the pSer-linker. Access to the immunodominant base of the Env trimer was secluded by placing the pSer-linker at the C-terminus of Env, which led to substantially reduced base directed responses in rabbits immunized with pSer-Env [214]. As alum has been long approved for clinical use, and the pSer-linker can be used with any protein immunogen by the introduction of a free cysteine, this approach is extremely in the development of various vaccine candidates. Immunogenicity of both pSer-conjugated Env trimer and several other immunogens are currently being assessed in NHPs.
6.2. RNA Vaccines
The shepherding strategy to drive bnAb development by immunization involves multiple different immunogens. There are numerous protein immunogens currently in development, and each proposed prime-boost schedule will involve a set of distinct immunogens that needs to be produced in accordance with GMP standards. Not only is this costly, but it also involves numerous approval and production steps for each protein vaccine to be tested in clinical trials. Synthetically produced nucleic acid vaccines bypass these issues, by utilizing a standardized manufacturing pipeline. As a testament to the power of RNA vaccines, both the Moderna RNA-1273 [159] and Pfizer BNT162b2[158] SARS-CoV2 vaccines were developed and progressed to efficacy trials at record speeds and exhibited ~95% efficacy. RNA based HIV vaccines like DNA and viral vectored vaccines, have the advantage of being able to elicit robust cellular responses [215,216] in addition to humoral responses. Although no RNA vaccines in the HIV field have progressed to clinical trials, several Env based RNA vaccines have shown to generate robust antigen-specific responses [157,216–218]. Further exploration of RNA vaccines expressing state-of-the-art immunogen constructs are expected to be forthcoming.
7. Conclusions
An HIV vaccine may still be years away, but many noteworthy recent advances have been made that have generated renewed optimism. Various vaccine candidates continue to be created and evaluated, particularly by employing novel immunogen design approaches, delivery methods, and adjuvant formulation.
Development of SOSIP-type stabilized soluble Env trimers provided huge momentum in preclinical animal studies. Compared with the previous generation of Env-based vaccines such as monovalent gp120 or uncleaved gp140 or gp160 trimers, near-native Env trimer immunogens more routinely elicit autologous tier 2 neutralizing antibody responses in animal models. Still, immunodominance to autologous neutralizing epitopes or non-neutralizing epitopes is a key concern, and weak tier 2 breadth has only sporadically been induced in animal immunizations. It remains unknown which epitopes will be targeted in humans. The results of the upcoming Env trimer protein immunization trials will strongly inform the direction of future vaccine designs and delivery methods, whether it be increased focus on GT and epitope focusing immunogens, even greater trimer stabilization, rerouting immunodominance, or any combination of these and additional factors. Phase 1 clinical trials for the early assessment of GT immunogens designed to elicit bnAb responses are ongoing, full results from those trials will be awaited with high anticipation. The preliminary report from the eOD-GT8 60mer clinical trial is extremely encouraging, and appears to herald a new era of GT vaccine designs.
The licensure of new adjuvants has also led to improved formulation of HIV vaccines in preclinical studies. Up until relatively recently, only a few adjuvants had been licensed, with a vast majority of currently licensed vaccines using alum. Several novel adjuvants had been developed and licensed in the last ~15 years, particularly multicomponent vaccines such as those including TLR agonists and saponins that induce stronger innate responses, and thereby enhanced adjuvanticity compared to alum, as reviewed by Del Giudice and colleagues [219]. As noted from several phase 1 studies discussed in this review, current studies, especially in preclinical settings, are increasingly shifting towards the use of diverse adjuvants in their formulations to maximize protein vaccine-induced immune responses.
A substantial number of clinical studies focus on vaccines aimed at generating cellular immunity. Importantly, progress has been made in viral vector designs to elicit strong CD8 T cell responses while minimizing cross reactivity to the vector. As with B cell responses and Ig gene diversity, breadth and magnitude of T cell responses to candidate immunogens elicited in animal models may not translate to humans due to interspecies diversity in MHC genes. Whether improvements introduced in the various consensus and mosaic vaccine candidates will elicit potent T cell responses in humans can only be answered through human trials. However, most published vaccines intended to elicit both cellular and Env-specific humoral responses have used a gp120 insert in the vectored vaccine component, followed by monomeric gp120 or non-prefusion gp140 or gp160 trimers as the Env protein boost. This is still the case with most current phase 1 vaccines discussed in this review. With a greater variety of superior Env trimer immunogens available, exploration of vaccines that incorporate and combine the best available candidates from both bnAb and T cell strategies is highly relevant [24].
As the field presses forward, there will undoubtedly be an increasing number of vaccine candidates progressing into large scale clinical trials. All HIV vaccine efficacy trials since RV144 have not been able to demonstrate protective efficacy. Despite the RV144 trial having been carried out over a decade ago, the criteria for assessing immunogenicity of vaccines in the recent efficacy trials relied heavily on correlates of protection derived from the RV144 trial. While the results of the Mosaico and Imbokodo trials will not be available for several years, the disappointing outcomes of HVTN702 are an indication that the field should revisit whether benchmarks set by the RV144 trial will indeed translate to substantial protective efficacy in humans. The fact that most vaccine candidates are unable to generate robust tier 2 virus neutralization and breadth has been overlooked as a go/no-go criteria for phase 3 trials. Further, many bnAbs with excellent tier 2 pseudovirus neutralization breadth and potency demonstrate reduced neutralization capacity to replication competent primary cell line derived viruses [220–223], suggesting that protective capacity by antibodies may need to be assessed much more critically.
On the other hand, the success of eOD-GT8 60mer in activating naïve VRC01-class precursor B cells provides a lesson that employing strict animal models, and preclinical assessment of B cells in humans, can be predictive of immunization outcomes. Multiple independent models were performed to yield consistent results to confirm the presence of target precursor immune cells in humans, and that those cells can be specifically targeted by the immunogen of interest. eOD-GT8 can also elicit affinity matured antibodies in stringent animal models. The human phase1 clinical trial, although preliminary, remains the only vaccine to demonstrate activation of bnAb-class B cells by vaccination in humans. Overall, lessons learned suggest that more rigorous sets of HIV vaccine preclinical assessment criteria may need to be implemented in order to make a more accurate prediction of whether an HIV vaccine candidate is likely to succeed in meeting clinical trial goals.
Acknowledgements
We would like to thank I. Phung, J.L. Quinn, and N. Bhat for proof reading and comments.
Funding
This work was supported by the National Institutes of Health (AI144462 to S.C).
Abbreviations
- bnAb
Broadly neutralizing antibody
- CD4bs
CD4 binding site
- CE
Conserved elements
- ChAd
Chimpanzee adenovirus
- DE
Dose escalation
- Env
HIV Envelope glycoprotein
- eOD
Engineered outer domain
- FP
Fusion peptide
- gH
Germline heavy chain
- gHL
Germline heavy and light chain
- GnT-1
Glucose N-acetyltransferase-1
- Gp
Glycoprotein
- GT
Germline-targeting
- HTI
HIVACAT T-cell immunogen
- iGL
Inferred germline
- MPER
Membrane proximal external region
- nAb
Neutralizing antibody
- NFL
Native-flexibly linked
- nnAb
Non-neutralizing antibody
- OP
Osmotic pump
- pSer
Phosphoserine
- T/F
Transmitter/founder
- UCA
Unmutated common ancestor
- UFO
Uncleaved prefusion optimized
Footnotes
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References
- [1].Global HIV & AIDS statistics — 2020 fact sheet | UNAIDS, (n.d.). https://www.unaids.org/en/resources/fact-sheet (accessedDecember 18, 2020).
- [2].Siegrist C-A, Vaccine Immunology, in: Plotkin’s Vaccines, Elsevier, 2018: pp. 16–34.e7. 10.1016/b978-0-323-35761-6.00002-x. [DOI] [Google Scholar]
- [3].Wagh K, Hahn BH, Korber B, Hitting the sweet spot: exploiting HIV-1 glycan shield for induction of broadly neutralizing antibodies, Curr. Opin. HIV AIDS 15 (2020) 267–274. 10.1097/COH.0000000000000639. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [4].Seaman MS, Janes H, Hawkins N, Grandpre LE, Devoy C, Giri A, Coffey RT, Harris L, Wood B, Daniels MG, Bhattacharya T, Lapedes A, Polonis VR, McCutchan FE, Gilbert PB, Self SG, Korber BT, Montefiori DC, Mascola JR, Tiered Categorization of a Diverse Panel of HIV-1 Env Pseudoviruses for Assessment of Neutralizing Antibodies, J. Virol 84 (2010) 1439–1452. 10.1128/jvi.02108-09. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [5].Munro JB, Gorman J, Ma X, Zhou Z, Arthos J, Burton DR, Koff WC, Courter JR, Smith AB, Kwong PD, Blanchard SC, Mothes W, Conformational dynamics of single HIV-1 envelope trimers on the surface of native virions, Science (80-. ) 346 (2014) 759–763. 10.1126/science.1254426. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [6].Pugach P, Ozorowski G, Cupo A, Ringe R, Yasmeen A, de Val N, Derking R, Kim HJ, Korzun J, Golabek M, de los Reyes K, Ketas TJ, Julien J-P, Burton DR, Wilson IA, Sanders RW, Klasse PJ, Ward AB, Moore JP, A Native-Like SOSIP.664 Trimer Based on an HIV-1 Subtype B env Gene , J. Virol (2015). 10.1128/jvi.03473-14. [DOI] [PMC free article] [PubMed]
- [7].Montefiori DC, Roederer M, Morris L, Seaman MS, Neutralization tiers of HIV-1, Curr. Opin. HIV AIDS (2018). 10.1097/COH.0000000000000442. [DOI] [PMC free article] [PubMed]
- [8].Seabright GE, Doores KJ, Burton DR, Crispin M, Protein and Glycan Mimicry in HIV Vaccine Design, J. Mol. Biol (2019). 10.1016/j.jmb.2019.04.016. [DOI] [PMC free article] [PubMed]
- [9].Havenar-Daughton C, Lee JH, Crotty S, Tfh cells and HIV bnAbs, an immunodominance model of the HIV neutralizing antibody generation problem., Immunol. Rev 275 (2017) 49–61. 10.1111/imr.12512. [DOI] [PubMed] [Google Scholar]
- [10].Burton DR, Mascola JR, Antibody responses to envelope glycoproteins in HIV-1 infection, Nat. Immunol 16 (2015) 571–576. http://www.nature.com/articles/ni.3158. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [11].Parren PWHI, Burton DR, Sattentau QJ, HIV-1 antibody - Debris or virion?, Nat. Med (1997). 10.1038/nm0497-366d. [DOI] [PubMed]
- [12].Sok D, Burton DR, Recent progress in broadly neutralizing antibodies to HIV, Nat. Immunol 19 (2018) 1179–1188. 10.1038/s41590-018-0235-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [13].Gruell H, Klein F, Antibody-mediated prevention and treatment of HIV-1 infection, Retrovirology 15 (2018) 1–11. 10.1186/s12977-018-0455-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [14].Julg B, Barouch DH, Neutralizing antibodies for HIV-1 prevention, Curr. Opin. HIV AIDS 14 (2019) 318–324. 10.1097/COH.0000000000000556. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [15].Burton DR, Hangartner L, Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design, Annu. Rev. Immunol. 34 (2016) 635–659. 10.1146/annurev-immunol-041015-055515. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [16].Betts MR, Nason MC, West SM, De Rosa SC, Migueles SA, Abraham J, Lederman MM, Benito JM, Goepfert PA, Connors M, Roederer M, Koup RA, HIV nonprogressors preferentially maintain highly functional HIV-specific CD8+ T cells, Blood (2006). 10.1182/blood-2005-12-4818. [DOI] [PMC free article] [PubMed]
- [17].Lambotte O, Boufassa F, Madec Y, Nguyen A, Goujard C, Meyer L, Rouzioux C, Venet A, Oelfraissy JF, HIV controllers: A homogeneous group of HIV-1-infected patients with spontaneous control of viral replication, Clin. Infect. Dis (2005). 10.1086/433188. [DOI] [PubMed]
- [18].Lefrère JJ, Morand-Joubert L, Mariotti M, Bludau H, Burghoffer B, Petit JC, Roudot-Thoraval F, Even individuals considered as long-term nonprogressors show biological signs of progression after 10 years of human immunodeficiency virus infection, Blood (1997). 10.1182/blood.v90.3.1133. [DOI] [PubMed]
- [19].Hansen SG, Ford JC, Lewis MS, Ventura AB, Hughes CM, Coyne-Johnson L, Whizin N, Oswald K, Shoemaker R, Swanson T, Legasse AW, Chiuchiolo MJ, Parks CL, Axthelm MK, Nelson JA, Jarvis MA, Piatak M, Lifson JD, Picker LJ, Profound early control of highly pathogenic SIV by an effector memory T-cell vaccine, Nature (2011). 10.1038/nature10003. [DOI] [PMC free article] [PubMed]
- [20].Hansen SG, Marshall EE, Malouli D, Ventura AB, Hughes CM, Ainslie E, Ford JC, Morrow D, Gilbride RM, Bae JY, Legasse AW, Oswald K, Shoemaker R, Berkemeier B, Bosche WJ, Hull M, Womack J, Shao J, Edlefsen PT, Reed JS, Burwitz BJ, Sacha JB, Axthelm MK, Früh K, Lifson JD, Picker LJ, A live-attenuated RhCMV/SIV vaccine shows long-term efficacy against heterologous SIV challenge, Sci. Transl. Med 11 (2019). 10.1126/scitranslmed.aaw2607. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [21].Migueles SA, Sabbaghian MS, Shupert WL, Bettinotti MP, Marincola FM, Martino L, Hallahan CW, Selig SM, Schwartz D, Sullivan J, Connors M, HLA B*5701 is highly associated with restriction of virus replication in a subgroup of HIV-infected long term nonprogressors, Proc. Natl. Acad. Sci. U. S. A (2000). 10.1073/pnas.050567397. [DOI] [PMC free article] [PubMed]
- [22].Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, Moodley E, Reddy S, De Pierres C, Mncube Z, Mkhwanazi N, Bishop K, Van Der Stok M, Nair K, Khan N, Crawford H, Payne R, Leslie A, Prado J, Prendergast A, Frater J, McCarthy N, Brander C, Learn GH, Nickle D, Rousseau C, Coovadia H, Mullins JI, Heckerman D, Walker BD, Goulder P, CD8+ T-cell responses to different HIV proteins have discordant associations with viral load, Nat. Med (2007). 10.1038/nm1520. [DOI] [PubMed]
- [23].Emu B, Sinclair E, Hatano H, Ferre A, Shacklett B, Martin JN, McCune JM, Deeks SG, HLA Class I-Restricted T-Cell Responses May Contribute to the Control of Human Immunodeficiency Virus Infection, but Such Responses Are Not Always Necessary for Long-Term Virus Control, J. Virol (2008). 10.1128/jvi.02176-07. [DOI] [PMC free article] [PubMed]
- [24].Arunachalam PS, Charles TP, Joag V, Bollimpelli VS, Scott MKD, Wimmers F, Burton SL, Labranche CC, Petitdemange C, Gangadhara S, Styles TM, Quarnstrom CF, Walter KA, Ketas TJ, Legere T, Jagadeesh Reddy PB, Kasturi SP, Tsai A, Yeung BZ, Gupta S, Tomai M, Vasilakos J, Shaw GM, Kang CY, Moore JP, Subramaniam S, Khatri P, Montefiori D, Kozlowski PA, Derdeyn CA, Hunter E, Masopust D, Amara RR, Pulendran B, T cell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers, Nat. Med (2020). 10.1038/s41591-020-0858-8. [DOI] [PMC free article] [PubMed]
- [25].Pitisuttithum P, Gilbert P, Gurwith M, Heyward W, Martin M, Van Griensven F, Hu D, Tappero JW, Choopanya K, Randomized, double-blind, placebo-controlled efficacy trial of a bivalent recombinant glycoprotein 120 HIV-1 vaccine among injection drug users in Bangkok, Thailand, J. Infect. Dis 194 (2006) 1661–1671. 10.1086/508748. [DOI] [PubMed] [Google Scholar]
- [26].Flynn NM, Forthal DN, Harro CD, Judson FN, Mayer KH, Para MF, Gurwith M, Placebo-controlled phase 3 trial of a recombinant glycoprotein 120 vaccine to prevent HIV-1 infection, J. Infect. Dis 191 (2005) 654–665. 10.1086/428404. [DOI] [PubMed] [Google Scholar]
- [27].Gilbert PB, Peterson ML, Follmann D, Hudgens MG, Francis DP, Gurwith M, Heyward WL, Jobes DV, Popovic V, Self SG, Sinangil F, Burke D, Berman PW, Correlation between immunologic responses to a recombinant glycoprotein 120 vaccine and incidence of HIV-1 infection in a phase 3 HIV-1 preventive vaccine trial, J. Infect. Dis 191 (2005) 666–677. 10.1086/428405. [DOI] [PubMed] [Google Scholar]
- [28].Gilbert P, Wang M, Wrin T, Petropoulos C, Gurwith M, Sinangil F, D’Souza P, Rodriguez-Chavez IR, DeCamp A, Giganti M, Berman PW, Self SG, Montefiori DC, Magnitude and breadth of a nonprotective neutralizing antibody response in an efficacy trial of a candidate HIV-1 gp120 vaccine, J. Infect. Dis 202 (2010) 595–605. 10.1086/654816. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [29].Buchbinder SP, Mehrotra DV, Duerr A, Fitzgerald DW, Mogg R, Li D, Gilbert PB, Lama JR, Marmor M, del Rio C, McElrath MJ, Casimiro DR, Gottesdiener KM, Chodakewitz JA, Corey L, Robertson MN, Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the Step Study): a double-blind, randomised, placebo-controlled, test-of-concept trial, Lancet 372 (2008) 1881–1893. 10.1016/S0140-6736(08)61591-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [30].Duerr A, Huang Y, Buchbinder S, Coombs RW, Sanchez J, Del Rio C, Casapia M, Santiago S, Gilbert P, Corey L, Robertson MN, Extended follow-up confirms early vaccine-enhanced risk of HIV acquisition and demonstrates waning effect over time among participants in a randomized trial of recombinant adenovirus HIV vaccine (Step Study), J. Infect. Dis (2012). 10.1093/infdis/jis342. [DOI] [PMC free article] [PubMed]
- [31].Gray GE, Moodie Z, Metch B, Gilbert PB, Bekker LG, Churchyard G, Nchabeleng M, Mlisana K, Laher F, Roux S, Mngadi K, Innes C, Mathebula M, Allen M, McElrath MJ, Robertson M, Kublin J, Corey L, Recombinant adenovirus type 5 HIV gag/pol/nef vaccine in South Africa: Unblinded, long-term follow-up of the phase 2b HVTN 503/Phambili study, Lancet Infect. Dis 14 (2014) 388–396. 10.1016/S1473-3099(14)70020-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [32].Fauci AS, Marovich MA, Dieffenbach CW, Eric Hunter SP Buchbinder, Immune Activation with HIV Vaccines: Implications of the Adenovirus Vector Experience, Science (80-. ) 344 (2014) 49–51. 10.1126/science.1250672.Immune. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [33].Qureshi H, Ma Z-M, Huang Y, Hodge G, Thomas MA, DiPasquale J, DeSilva V, Fritts L, Bett AJ, Casimiro DR, Shiver JW, Robert-Guroff M, Robertson MN, McChesney MB, Gilbert PB, Miller CJ, Low-Dose Penile SIVmac251 Exposure of Rhesus Macaques Infected with Adenovirus Type 5 (Ad5) and Then Immunized with a Replication-Defective Ad5-Based SIV gag/pol/nef Vaccine Recapitulates the Results of the Phase IIb Step Trial of a Similar HIV-1 Vaccine, J. Virol 86 (2012) 2239–2250. 10.1128/jvi.06175-11. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [34].Hammer SM, Sobieszczyk ME, Janes H, Karuna ST, Mulligan MJ, Grove D, Koblin BA, Buchbinder SP, Keefer MC, Tomaras GD, Frahm N, Hural J, Anude C, Graham BS, Enama ME, Adams E, DeJesus E, Novak RM, Frank I, Bentley C, Ramirez S, Fu R, Koup RA, Mascola JR, Nabel GJ, Montefiori DC, Kublin J, McElrath MJ, Corey L, Gilbert PB, Efficacy Trial of a DNA/rAd5 HIV-1 Preventive Vaccine, N. Engl. J. Med 369 (2013) 2083–2092. 10.1056/nejmoa1310566. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [35].Rerks-Ngarm S, Pitisuttithum P, Nitayaphan S, Kaewkungwal J, Chiu J, Paris R, Premsri N, Namwat C, de Souza M, Adams E, Benenson M, Gurunathan S, Tartaglia J, McNeil JG, Francis DP, Stablein D, Birx DL, Chunsuttiwat S, Khamboonruang C, Thongcharoen P, Robb ML, Michael NL, Kunasol P, Kim JH, MOPH-TAVEG Investigators, Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand., N. Engl. J. Med 361 (2009) 2209–20. 10.1056/NEJMoa0908492. [DOI] [PubMed] [Google Scholar]
- [36].Leavy O, HIV vaccine results controversy, Nat. Rev. Immunol (2009). 10.1038/nri2668. [DOI]
- [37].Gilbert PB, Berger JO, Stablein D, Becker S, Essex M, Hammer SM, Kim JH, DeGruttola VG, Statistical interpretation of the RV144 HIV vaccine efficacy trial in Thailand: A case study for statistical issues in efficacy trials, J. Infect. Dis (2011). 10.1093/infdis/jiq152. [DOI] [PMC free article] [PubMed]
- [38].Haynes BF, Gilbert PB, McElrath MJ, Zolla-Pazner S, Tomaras GD, Alam SM, Evans DT, Montefiori DC, Karnasuta C, Sutthent R, Liao H-X, DeVico AL, Lewis GK, Williams C, Pinter A, Fong Y, Janes H, DeCamp A, Huang Y, Rao M, Billings E, Karasavvas N, Robb ML, Ngauy V, de Souza MS, Paris R, Ferrari G, Bailer RT, Soderberg KA, Andrews C, Berman PW, Frahm N, De Rosa SC, Alpert MD, Yates NL, Shen X, Koup RA, Pitisuttithum P, Kaewkungwal J, Nitayaphan S, Rerks-Ngarm S, Michael NL, Kim JH, Immune-Correlates Analysis of an HIV-1 Vaccine Efficacy Trial, N. Engl. J. Med 366 (2012) 1275–1286. 10.1056/NEJMoa1113425. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [39].Yates NL, Liao HX, Fong Y, DeCamp A, Vandergrift NA, Williams WT, Alam SM, Ferrari G, Yang ZY, Seaton KE, Berman PW, Alpert MD, Evans DT, O’Connell RJ, Francis D, Sinangil F, Lee C, Nitayaphan S, Rerks-Ngarm S, Kaewkungwal J, Pitisuttithum P, Tartaglia J, Pinter A, Zolla-Pazner S, Gilbert PB, Nabel GJ, Michael NL, Kim JH, Montefiori DC, Haynes BF, Tomaras GD, Vaccine-induced Env V1-V2 IgG3 correlates with lower HIV-1 infection risk and declines soon after vaccination, Sci. Transl. Med 6 (2014). 10.1126/scitranslmed.3007730. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [40].Chung AW, Kumar MP, Arnold KB, Yu WH, Schoen MK, Dunphy LJ, Suscovich TJ, Frahm N, Linde C, Mahan AE, Hoffner M, Streeck H, Ackerman ME, McElrath MJ, Schuitemaker H, Pau MG, Baden LR, Kim JH, Michael NL, Barouch DH, Lauffenburger DA, Alter G, Dissecting Polyclonal Vaccine-Induced Humoral Immunity against HIV Using Systems Serology, Cell (2015). 10.1016/j.cell.2015.10.027. [DOI] [PMC free article] [PubMed]
- [41].Lin L, Finak G, Ushey K, Seshadri C, Hawn TR, Frahm N, Scriba TJ, Mahomed H, Hanekom W, Bart PA, Pantaleo G, Tomaras GD, Rerks-Ngarm S, Kaewkungwal J, Nitayaphan S, Pitisuttithum P, Michael NL, Kim JH, Robb ML, O’Connell RJ, Karasavvas N, Gilbert P, De Rosa SC, McElrath MJ, Gottardo R, COMPASS identifies T-cell subsets correlated with clinical outcomes, Nat. Biotechnol 33 (2015) 610–616. 10.1038/nbt.3187. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [42].MD PL-GB, PhD ZM, MD NG, MBBCh FL, PhD GDT, PhD KWC, MSc MA, MBBCh MM, MBChB KM, PhD BD, MBChB CI, PhD CB, PhD NF, MS DEM, DPhil LM, PhD NNM, PhD DCM, PhD MS-K, MS SG, MS CY, PhD VLM, PhD MNP, PhD SP, MD CAD, PhD SWB, MD NK, MSc MK, MD PNLM, MD MLR, MD JGK, PhD PBG, MD LC, MBBCh PGEG, MD MJM, H. 100 P. Team, Subtype C ALVAC-HIV and bivalent subtype C gp120/MF59 HIV-1 vaccine in low-risk, HIV-uninfected, South African adults: a phase 1/2 trial, Lancet HIV 5 (2018) e366–e378. 10.1016/S2352-3018(18)30071-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [43].Experimental HIV Vaccine Regimen Ineffective in Preventing HIV | NIH: National Institute of Allergy and Infectious Diseases, (n.d.). https://www.niaid.nih.gov/news-events/experimental-hiv-vaccine-regimen-ineffective-preventing-hiv (accessedDecember 7, 2020).
- [44].Abbink P, Lemckert AAC, Ewald BA, Lynch DM, Denholtz M, Smits S, Holterman L, Damen I, Vogels R, Thorner AR, O’Brien KL, Carville A, Mansfield KG, Goudsmit J, Havenga MJE, Barouch DH, Comparative Seroprevalence and Immunogenicity of Six Rare Serotype Recombinant Adenovirus Vaccine Vectors from Subgroups B and D, J. Virol (2007). 10.1128/jvi.02696-06. [DOI] [PMC free article] [PubMed]
- [45].Fischer W, Perkins S, Theiler J, Bhattacharya T, Yusim K, Funkhouser R, Kuiken C, Haynes B, Letvin NL, Walker BD, Hahn BH, Korber BT, Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants, Nat. Med 13 (2007) 100–106. 10.1038/nm1461. [DOI] [PubMed] [Google Scholar]
- [46].Barouch DH, O’Brien KL, Simmons NL, King SL, Abbink P, Maxfield LF, Sun YH, La Porte A, Riggs AM, Lynch DM, Clark SL, Backus K, Perry JR, Seaman MS, Carville A, Mansfield KG, Szinger JJ, Fischer W, Muldoon M, Korber B, Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys, Nat. Med 16 (2010) 319–323. 10.1038/nm.2089. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [47].Barouch DH, Stephenson KE, Borducchi EN, Smith K, Stanley K, McNally AG, Liu J, Abbink P, Maxfield LF, Seaman MS, Dugast AS, Alter G, Ferguson M, Li W, Earl PL, Moss B, Giorgi EE, Szinger JJ, Eller LA, Billings EA, Rao M, Tovanabutra S, Sanders-Buell E, Weijtens M, Pau MG, Schuitemaker H, Robb ML, Kim JH, Korber BT, Michael NL, Protective efficacy of a global HIV-1 mosaic vaccine against heterologous SHIV challenges in rhesus monkeys, Cell 155 (2013) 531. 10.1016/j.cell.2013.09.061. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [48].Barouch DH, Alter G, Broge T, Linde C, Ackerman ME, Brown EP, Borducchi EN, Smith KM, Nkolola JP, Liu J, Shields J, Parenteau L, Whitney JB, Abbink P, Ng’ang’a DM, Seaman MS, Lavine CL, Perry JR, Li W, Colantonio AD, Lewis MG, Chen B, Wenschuh H, Reimer U, Piatak M, Lifson JD, Handley SA, Virgin HW, Koutsoukos M, Lorin C, Voss G, Weijtens M, Pau MG, Schuitemaker H, Protective efficacy of adenovirus/protein vaccines against SIV challenges in rhesus monkeys, Science (80-. ) 349 (2015) 320–324. 10.1126/science.aab3886. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [49].Alter G, Yu WH, Chandrashekar A, Borducchi EN, Ghneim K, Sharma A, Nedellec R, McKenney KR, Linde C, Broge T, Suscovich TJ, Linnekin T, Abbink P, Mercado NB, Nkolola JP, McMahan K, Bondzie EA, Hamza V, Peter L, Kordana N, Mahrokhian S, Seaman MS, Li W, Lewis MG, Lauffenburger DA, Hangartner L, Sekaly RP, Barouch DH, Passive Transfer of Vaccine-Elicited Antibodies Protects against SIV in Rhesus Macaques, Cell (2020). 10.1016/j.cell.2020.08.033. [DOI] [PMC free article] [PubMed]
- [50].Barouch DH, Tomaka FL, Wegmann F, Stieh DJ, Alter G, Robb ML, Michael NL, Peter L, Nkolola JP, Borducchi EN, Chandrashekar A, Jetton D, Stephenson KE, Li W, Korber B, Tomaras GD, Montefiori DC, Gray G, Frahm N, McElrath MJ, Baden L, Johnson J, Hutter J, Swann E, Karita E, Kibuuka H, Mpendo J, Garrett N, Mngadi K, Chinyenze K, Priddy F, Lazarus E, Laher F, Nitayapan S, Pitisuttithum P, Bart S, Campbell T, Feldman R, Lucksinger G, Borremans C, Callewaert K, Roten R, Sadoff J, Scheppler L, Weijtens M, Feddes-de Boer K, van Manen D, Vreugdenhil J, Zahn R, Lavreys L, Nijs S, Tolboom J, Hendriks J, Euler Z, Pau MG, Schuitemaker H, Evaluation of a mosaic HIV-1 vaccine in a multicentre, randomised, double-blind, placebo-controlled, phase 1/2a clinical trial (APPROACH) and in rhesus monkeys (NHP 13–19), Lancet 392 (2018) 232–243. https://linkinghub.elsevier.com/retrieve/pii/S0140673618313643. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [51].Baden LR, Stieh DJ, Sarnecki M, Walsh SR, Tomaras GD, Kublin JG, McElrath MJ, Alter G, Ferrari G, Montefiori D, Mann P, Nijs S, Callewaert K, Goepfert P, Edupuganti S, Karita E, Langedijk JP, Wegmann F, Corey L, Pau MG, Barouch DH, Schuitemaker H, Tomaka F, Ake JA, Buchbinder S, Buleza K, Cohen KW, Crowell TA, Euler Z, Frank I, Goedhart D, Keefer M, Kelly C, Mayer K, Nkolola J, Peter L, Robb ML, Rouphael N, Scheppler L, Sobieszczyk M, Van Tieu H, Safety and immunogenicity of two heterologous HIV vaccine regimens in healthy, HIV-uninfected adults (TRAVERSE): a randomised, parallel-group, placebo-controlled, double-blind, phase 1/2a study, Lancet HIV 7 (2020) e688–e698. 10.1016/S2352-3018(20)30229-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [52].Colloca S, Barnes E, Folgori A, Ammendola V, Capone S, Cirillo A, Siani L, Naddeo M, Grazioli F, Esposito ML, Ambrosio M, Sparacino A, Bartiromo M, Meola A, Smith K, Kurioka A, O’Hara GA, Ewer KJ, Anagnostou N, Bliss C, Hill AVS, Traboni C, Klenerman P, Cortese R, Nicosia A, Vaccine vectors derived from a large collection of simian adenoviruses induce potent cellular immunity across multiple species, Sci. Transl. Med 4 (2012) 1–10. 10.1126/scitranslmed.3002925. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [53].Dicks MDJ, Spencer AJ, Edwards NJ, Wadell G, Bojang K, Gilbert SC, Hill AVS, Cottingham MG, A novel chimpanzee adenovirus vector with low human seroprevalence: Improved systems for vector derivation and comparative immunogenicity, PLoS One 7 (2012). 10.1371/journal.pone.0040385. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [54].Folegatti PM, Ewer KJ, Aley PK, Angus B, Becker S, Belij-Rammerstorfer S, Bellamy D, Bibi S, Bittaye M, Clutterbuck EA, Dold C, Faust SN, Finn A, Flaxman AL, Hallis B, Heath P, Jenkin D, Lazarus R, Makinson R, Minassian AM, Pollock KM, Ramasamy M, Robinson H, Snape M, Tarrant R, Voysey M, Green C, Douglas AD, Hill AVS, Lambe T, Gilbert SC, Pollard AJ, Aboagye J, Adams K, Ali A, Allen E, Allison JL, Anslow R, Arbe-Barnes EH, Babbage G, Baillie K, Baker M, Baker N, Baker P, Baleanu I, Ballaminut J, Barnes E, Barrett J, Bates L, Batten A, Beadon K, Beckley R, Berrie E, Berry L, Beveridge A, Bewley KR, Bijker EM, Bingham T, Blackwell L, Blundell CL, Bolam E, Boland E, Borthwick N, Bower T, Boyd A, Brenner T, Bright PD, Brown-O’Sullivan C, Brunt E, Burbage J, Burge S, Buttigieg KR, Byard N, Cabera Puig I, Calvert A, Camara S, Cao M, Cappuccini F, Carr M, Carroll MW, Carter V, Cathie K, Challis RJ, Charlton S, Chelysheva I, Cho JS, Cicconi P, Cifuentes L, Clark H, Clark E, Cole T, Colin-Jones R, Conlon CP, Cook A, Coombes NS, Cooper R, Cosgrove CA, Coy K, Crocker WEM, Cunningham CJ, Damratoski BE, Dando L, Datoo MS, Davies H, De Graaf H, Demissie T, Di Maso C, Dietrich I, Dong T, Donnellan FR, Douglas N, Downing C, Drake J, Drake-Brockman R, Drury RE, Dunachie SJ, Edwards NJ, Edwards FDL, Edwards CJ, Elias SC, Elmore MJ, Emary KRW, English MR, Fagerbrink S, Felle S, Feng S, Field S, Fixmer C, Fletcher C, Ford KJ, Fowler J, Fox P, Francis E, Frater J, Furze J, Fuskova M, Galiza E, Gbesemete D, Gilbride C, Godwin K, Gorini G, Goulston L, Grabau C, Gracie L, Gray Z, Guthrie LB, Hackett M, Halwe S, Hamilton E, Hamlyn J, Hanumunthadu B, Harding I, Harris SA, Harris A, Harrison D, Harrison C, Hart TC, Haskell L, Hawkins S, Head I, Henry JA, Hill J, Hodgson SHC, Hou MM, Howe E, Howell N, Hutlin C, Ikram S, Isitt C, Iveson P, Jackson S, Jackson F, James SW, Jenkins M, Jones E, Jones K, Jones CE, Jones B, Kailath R, Karampatsas K, Keen J, Kelly S, Kelly D, Kerr D, Kerridge S, Khan L, Khan U, Killen A, Kinch J, King TB, King L, King J, Kingham-Page L, Klenerman P, Knapper F, Knight JC, Knott D, Koleva S, Kupke A, Larkworthy CW, Larwood JPJ, Laskey A, Lawrie AM, Lee A, Ngan Lee KY, Lees EA, Legge H, Lelliott A, Lemm NM, Lias AM, Linder A, Lipworth S, Liu X, Liu S, Lopez Ramon R, Lwin M, Mabesa F, Madhavan M, Mallett G, Mansatta K, Marcal I, Marinou S, Marlow E, Marshall JL, Martin J, McEwan J, McInroy L, Meddaugh G, Mentzer AJ, Mirtorabi N, Moore M, Moran E, Morey E, Morgan V, Morris SJ, Morrison H, Morshead G, Morter R, Mujadidi YF, Muller J, Munera-Huertas T, Munro C, Munro A, Murphy S, Munster VJ, Mweu P, Noé A, Nugent FL, Nuthall E, O’Brien K, O’Connor D, Oguti B, Oliver JL, Oliveira C, O’Reilly PJ, Osborn M, Osborne P, Owen C, Owens D, Owino N, Pacurar M, Parker K, Parracho H, Patrick-Smith M, Payne V, Pearce J, Peng Y, Peralta Alvarez MP, Perring J, Pfafferott K, Pipini D, Plested E, Pluess-Hall H, Pollock K, Poulton I, Presland L, Provstgaard-Morys S, Pulido D, Radia K, Ramos Lopez F, Rand J, Ratcliffe H, Rawlinson T, Rhead S, Riddell A, Ritchie AJ, Roberts H, Robson J, Roche S, Rohde C, Rollier CS, Romani R, Rudiansyah I, Saich S, Sajjad S, Salvador S, Sanchez Riera L, Sanders H, Sanders K, Sapaun S, Sayce C, Schofield E, Screaton G, Selby B, Semple C, Sharpe HR, Shaik I, Shea A, Shelton H, Silk S, Silva-Reyes L, Skelly DT, Smee H, Smith CC, Smith DJ, Song R, Spencer AJ, Stafford E, Steele A, Stefanova E, Stockdale L, Szigeti A, Tahiri-Alaoui A, Tait M, Talbot H, Tanner R, Taylor IJ, Taylor V, Te Water Naude R, Thakur N, Themistocleous Y, Themistocleous A, Thomas M, Thomas TM, Thompson A, Thomson-Hill S, Tomlins J, Tonks S, Towner J, Tran N, Tree JA, Truby A, Turkentine K, Turner C, Turner N, Turner S, Tuthill T, Ulaszewska M, Varughese R, Van Doremalen N, Veighey K, Verheul MK, Vichos I, Vitale E, Walker L, Watson MEE, Welham B, Wheat J, White C, White R, Worth AT, Wright D, Wright S, Yao XL, Yau Y, Safety and immunogenicity of the ChAdOx1 nCoV-19 vaccine against SARS-CoV-2: a preliminary report of a phase 1/2, single-blind, randomised controlled trial, Lancet 396 (2020) 467–478. 10.1016/S0140-6736(20)31604-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [55].Voysey M, Clemens SAC, Madhi SA, Weckx LY, Folegatti PM, Aley PK, Angus B, Baillie VL, Barnabas SL, Bhorat QE, Bibi S, Briner C, Cicconi P, Collins AM, Colin-Jones R, Cutland CL, Darton TC, Dheda K, Duncan CJA, Emary KRW, Ewer KJ, Fairlie L, Faust SN, Feng S, Ferreira DM, Finn A, Goodman AL, Green CM, Green CA, Heath PT, Hill C, Hill H, Hirsch I, Hodgson SHC, Izu A, Jackson S, Jenkin D, Joe CCD, Kerridge S, Koen A, Kwatra G, Lazarus R, Lawrie AM, Lelliott A, Libri V, Lillie PJ, Mallory R, Mendes AVA, Milan EP, Minassian AM, McGregor A, Morrison H, Mujadidi YF, Nana A, O’Reilly PJ, Padayachee SD, Pittella A, Plested E, Pollock KM, Ramasamy MN, Rhead S, Schwarzbold AV, Singh N, Smith A, Song R, Snape MD, Sprinz E, Sutherland RK, Tarrant R, Thomson EC, Török ME, Toshner M, Turner DPJ, Vekemans J, Villafana TL, Watson MEE, Williams CJ, Douglas AD, Hill AVS, Lambe T, Gilbert SC, Pollard AJ, Aban M, Abayomi F, Abeyskera K, Aboagye J, Adam M, Adams K, Adamson J, Adelaja YA, Adewetan G, Adlou S, Ahmed K, Akhalwaya Y, Akhalwaya S, Alcock A, Ali A, Allen ER, Allen L, Almeida TCDSC, Alves MPS, Amorim F, Andritsou F, Anslow R, Appleby M, Arbe-Barnes EH, Ariaans MP, Arns B, Arruda L, Azi P, Azi L, Babbage G, Bailey C, Baker KF, Baker M, Baker N, Baker P, Baldwin L, Baleanu I, Bandeira D, Bara A, Barbosa MAS, Barker D, Barlow GD, Barnes E, Barr AS, Barrett JR, Barrett J, Bates L, Batten A, Beadon K, Beales E, Beckley R, Belij-Rammerstorfer S, Bell J, Bellamy D, Bellei N, Belton S, Berg A, Bermejo L, Berrie E, Berry L, Berzenyi D, Beveridge A, Bewley KR, Bexhell H, Bhikha S, Bhorat AE, Bhorat ZE, Bijker E, Birch G, Birch S, Bird A, Bird O, Bisnauthsing K, Bittaye M, Blackstone K, Blackwell L, Bletchly H, Blundell CL, Blundell SR, Bodalia P, Boettger BC, Bolam E, Boland E, Bormans D, Borthwick N, Bowring F, Boyd A, Bradley P, Brenner T, Brown P, Brown C, Brown-O’Sullivan C, Bruce S, Brunt E, Buchan R, Budd W, Bulbulia YA, Bull M, Burbage J, Burhan H, Burn A, Buttigieg KR, Byard N, Cabera Puig I, Calderon G, Calvert A, Camara S, Cao M, Cappuccini F, Cardoso JR, Carr M, Carroll MW, Carson-Stevens A, de M. Carvalho Y, Carvalho JAM, Casey HR, Cashen P, Castro T, Castro LC, Cathie K, Cavey A, Cerbino-Neto J, Chadwick J, Chapman D, Charlton S, Chelysheva I, Chester O, Chita S, Cho JS, Cifuentes L, Clark E, Clark M, Clarke A, Clutterbuck EA, Collins SLK, Conlon CP, Connarty S, Coombes N, Cooper C, Cooper R, Cornelissen L, Corrah T, Cosgrove C, Cox T, Crocker WEM, Crosbie S, Cullen L, Cullen D, Cunha DRMF, Cunningham C, Cuthbertson FC, Da Guarda SNF, da Silva LP, Damratoski BE, Danos Z, Dantas MTDC, Darroch P, Datoo MS, Datta C, Davids M, Davies SL, Davies H, Davis E, Davis J, Davis J, De Nobrega MMD, De Oliveira Kalid LM, Dearlove D, Demissie T, Desai A, Di Marco S, Di Maso C, Dinelli MIS, Dinesh T, Docksey C, Dold C, Dong T, Donnellan FR, Dos Santos T, dos Santos TG, Dos Santos EP, Douglas N, Downing C, Drake J, Drake-Brockman R, Driver K, Drury R, Dunachie SJ, Durham BS, Dutra L, Easom NJW, van Eck S, Edwards M, Edwards NJ, El Muhanna OM, Elias SC, Elmore M, English M, Esmail A, Essack YM, Farmer E, Farooq M, Farrar M, Farrugia L, Faulkner B, Fedosyuk S, Felle S, Ferreira Da Silva C, Field S, Fisher R, Flaxman A, Fletcher J, Fofie H, Fok H, Ford KJ, Fowler J, Fraiman PHA, Francis E, Franco MM, Frater J, Freire MSM, Fry SH, Fudge S, Furze J, Fuskova M, Galian-Rubio P, Galiza E, Garlant H, Gavrila M, Geddes A, Gibbons KA, Gilbride C, Gill H, Glynn S, Godwin K, Gokani K, Goldoni UC, Goncalves M, Gonzalez IGS, Goodwin J, Goondiwala A, Gordon-Quayle K, Gorini G, Grab J, Gracie L, Greenland M, Greenwood N, Greffrath J, Groenewald MM, Grossi L, Gupta G, Hackett M, Hallis B, Hamaluba M, Hamilton E, Hamlyn J, Hammersley D, Hanrath AT, Hanumunthadu B, Harris SA, Harris C, Harris T, Harrison TD, Harrison D, Hart TC, Hartnell B, Hassan S, Haughney J, Hawkins S, Hay J, Head I, Henry J, Hermosin Herrera M, Hettle DB, Hill J, Hodges G, Horne E, Hou MM, Houlihan C, Howe E, Howell N, Humphreys J, Humphries HE, Hurley K, Huson C, Hyder-Wright A, Hyams C, Ikram S, Ishwarbhai A, Ivan M, Iveson P, Iyer V, Jackson F, De Jager J, Jaumdally S, Jeffers H, Jesudason N, Jones B, Jones K, Jones E, Jones C, Jorge MR, Jose A, Joshi A, Júnior EAMS, Kadziola J, Kailath R, Kana F, Karampatsas K, Kasanyinga M, Keen J, Kelly EJ, Kelly DM, Kelly D, Kelly S, Kerr D, de Á. Kfouri R, Khan L, Khozoee B, Kidd S, Killen A, Kinch J, Kinch P, King LDW, King TB, Kingham L, Klenerman P, Knapper F, Knight JC, Knott D, Koleva S, Lang M, Lang G, Larkworthy CW, Larwood JPJ, Law R, Lazarus EM, Leach A, Lees EA, Lemm NM, Lessa A, Leung S, Li Y, Lias AM, Liatsikos K, Linder A, Lipworth S, Liu S, Liu X, Lloyd A, Lloyd S, Loew L, Lopez Ramon R, Lora L, Lowthorpe V, Luz K, MacDonald JC, MacGregor G, Madhavan M, Mainwaring DO, Makambwa E, Makinson R, Malahleha M, Malamatsho R, Mallett G, Mansatta K, Maoko T, Mapetla K, Marchevsky NG, Marinou S, Marlow E, Marques GN, Marriott P, Marshall RP, Marshall JL, Martins FJ, Masenya M, Masilela M, Masters SK, Mathew M, Matlebjane H, Matshidiso K, Mazur O, Mazzella A, McCaughan H, McEwan J, McGlashan J, McInroy L, McIntyre Z, McLenaghan D, McRobert N, McSwiggan S, Megson C, Mehdipour S, Meijs W, Mendonça RNÁ, Mentzer AJ, Mirtorabi N, Mitton C, Mnyakeni S, Moghaddas F, Molapo K, Moloi M, Moore M, Moraes-Pinto MI, Moran M, Morey E, Morgans R, Morris S, Morris S, Morris HC, Morselli F, Morshead G, Morter R, Mottal L, Moultrie A, Moya N, Mpelembue M, Msomi S, Mugodi Y, Mukhopadhyay E, Muller J, Munro A, Munro C, Murphy S, Mweu P, Myasaki CH, Naik G, Naker K, Nastouli E, Nazir A, Ndlovu B, Neffa F, Njenga C, Noal H, Noé A, Novaes G, Nugent FL, Nunes G, O’Brien K, O’Connor D, Odam M, Oelofse S, Oguti B, Olchawski V, Oldfield NJ, Oliveira MG, Oliveira C, Oosthuizen A, O’Reilly P, Osborne P, Owen DRJ, Owen L, Owens D, Owino N, Pacurar M, Paiva BVB, Palhares EMF, Palmer S, Parkinson S, Parracho HMRT, Parsons K, Patel D, Patel B, Patel F, Patel K, Patrick-Smith M, Payne RO, Peng Y, Penn EJ, Pennington A, Peralta Alvarez MP, Perring J, Perry N, Perumal R, Petkar S, Philip T, Phillips DJ, Phillips J, Phohu MK, Pickup L, Pieterse S, Piper J, Pipini D, Plank M, Du Plessis J, Pollard S, Pooley J, Pooran A, Poulton I, Powers C, Presa FB, Price DA, Price V, Primeira M, Proud PC, Provstgaard-Morys S, Pueschel S, Pulido D, Quaid S, Rabara R, Radford A, Radia K, Rajapaska D, Rajeswaran T, Ramos ASF, Ramos Lopez F, Rampling T, Rand J, Ratcliffe H, Rawlinson T, Rea D, Rees B, Reiné J, Resuello-Dauti M, Reyes Pabon E, Ribiero CM, Ricamara M, Richter A, Ritchie N, Ritchie AJ, Robbins AJ, Roberts H, Robinson RE, Robinson H, Rocchetti TT, Rocha BP, Roche S, Rollier C, Rose L, Ross Russell AL, Rossouw L, Royal S, Rudiansyah I, Ruiz S, Saich S, Sala C, Sale J, Salman AM, Salvador N, Salvador S, Sampaio M, Samson AD, Sanchez-Gonzalez A, Sanders H, Sanders K, Santos E, Santos Guerra MFS, Satti I, Saunders JE, Saunders C, Sayed A, Schim van der Loeff I, Schmid AB, Schofield E, Screaton G, Seddiqi S, Segireddy RR, Senger R, Serrano S, Shah R, Shaik I, Sharpe HE, Sharrocks K, Shaw R, Shea A, Shepherd A, Shepherd JG, Shiham F, Sidhom E, Silk SE, da Silva Moraes AC, Silva-Junior G, Silva-Reyes L, Silveira AD, Silveira MBV, Sinha J, Skelly DT, Smith DC, Smith N, Smith HE, Smith DJ, Smith CC, Soares A, Soares T, Solórzano C, Sorio GL, Sorley K, Sosa-Rodriguez T, Souza CMCDL, Souza BSDF, Souza AR, Spencer AJ, Spina F, Spoors L, Stafford L, Stamford I, Starinskij I, Stein R, Steven J, Stockdale L, Stockwell LV, Strickland LH, Stuart AC, Sturdy A, Sutton N, Szigeti A, Tahiri-Alaoui A, Tanner R, Taoushanis C, Tarr AW, Taylor K, Taylor U, Taylor IJ, Taylor J, te Water Naude R, Themistocleous Y, Themistocleous A, Thomas M, Thomas K, Thomas TM, Thombrayil A, Thompson F, Thompson A, Thompson K, Thompson A, Thomson J, Thornton-Jones V, Tighe PJ, Tinoco LA, Tiongson G, Tladinyane B, Tomasicchio M, Tomic A, Tonks S, Towner J, Tran N, Tree J, Trillana G, Trinham C, Trivett R, Truby A, Tsheko BL, Turabi A, Turner R, Turner C, Ulaszewska M, Underwood BR, Varughese R, Verbart D, Verheul M, Vichos I, Vieira T, Waddington CS, Walker L, Wallis E, Wand M, Warbick D, Wardell T, Warimwe G, Warren SC, Watkins B, Watson E, Webb S, Webb-Bridges A, Webster A, Welch J, Wells J, West A, White C, White R, Williams P, Williams RL, Winslow R, Woodyer M, Worth AT, Wright D, Wroblewska M, Yao A, Zimmer R, Zizi D, Zuidewind P, Safety and efficacy of the ChAdOx1 nCoV-19 vaccine (AZD1222) against SARS-CoV-2: an interim analysis of four randomised controlled trials in Brazil, South Africa, and the UK, Lancet 397 (2021) 99–111. 10.1016/S0140-6736(20)32661-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [56].Létourneau S, Im EJ, Mashishi T, Brereton C, Bridgeman A, Yang H, Dorrell L, Dong T, Korber B, McMichael AJ, Hanke T, Design and pre-clinical evaluation of a universal HIV-1 vaccine, PLoS One 2 (2007) 1–11. 10.1371/journal.pone.0000984. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [57].Mothe B, Hu X, Llano A, Rosati M, Olvera A, Kulkarni V, Valentin A, Alicea C, Pilkington GR, Sardesai NY, Rocafort M, Crespo M, Carrillo J, Marco A, Mullins JI, Dorrell L, Hanke T, Clotet B, Pavlakis GN, Felber BK, Brander C, A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques, J. Transl. Med 13 (2015) 1–23. 10.1186/s12967-015-0392-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [58].Ondondo B, Murakoshi H, Clutton G, Abdul-Jawad S, Wee EGT, Gatanaga H, Oka S, McMichael AJ, Takiguchi M, Korber B, Hanke T, Novel conserved-region T-cell mosaic vaccine with high global HIV-1 coverage is recognized by protective responses in untreated infection, Mol. Ther 24 (2016) 832–842. 10.1038/mt.2016.3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [59].Mothe B, Llano A, Ibarrondo J, Daniels M, Miranda C, Zamarreño J, Bach V, Zuniga R, Pérez-Álvarez S, Berger CT, Puertas MC, Martinez-Picado J, Rolland M, Farfan M, Szinger JJ, Hildebrand WH, Yang OO, Sanchez-Merino V, Brumme CJ, Brumme ZL, Heckerman D, Allen TM, Mullins JI, Gómez G, Goulder PJ, Walker BD, Gatell JM, Clotet B, Korber BT, Sanchez J, Brander C, Definition of the viral targets of protective HIV-1-specific T cell responses, J. Transl. Med 9 (2011) 1–20. 10.1186/1479-5876-9-208. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [60].Borthwick N, Ahmed T, Ondondo B, Hayes P, Rose A, Ebrahimsa U, Hayton EJ, Black A, Bridgeman A, Rosario M, Hill AV, Berrie E, Moyle S, Frahm N, Cox J, Colloca S, Nicosia A, Gilmour J, McMichael AJ, Dorrell L, Hanke T, Vaccine-elicited human T cells recognizing conserved protein regions inhibit HIV-1, Mol. Ther 22 (2014) 464–475. 10.1038/mt.2013.248. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [61].Gurwith M, Lock M, Taylor EM, Ishioka G, Alexander J, Mayall T, Ervin JE, Greenberg RN, Strout C, Treanor JJ, Webby R, Wright PF, Safety and immunogenicity of an oral, replicating adenovirus serotype 4 vector vaccine for H5N1 influenza: A Randomised, double-blind, placebo-controlled, phase 1 study, Lancet Infect. Dis 13 (2013) 238–250. 10.1016/S1473-3099(12)70345-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [62].Alexander J, Mendy J, Vang L, Avanzini JB, Garduno F, Manayani DJ, Ishioka G, Farness P, Ping LH, Swanstrom R, Parks R, Liao HX, Haynes BF, Montefiori DC, LaBranche C, Smith J, Gurwith M, Mayall T, Pre-clinical development of a recombinant, replication-competent adenovirus serotype 4 vector vaccine expressing HIV-1 envelope 1086 Clade C, PLoS One 8 (2013) 1–16. 10.1371/journal.pone.0082380. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [63].Sharma SK, deVal N, Bale S, Guenaga J, Tran K, Feng Y, Dubrovskaya V, Ward AB, Wyatt RT, Cleavage-Independent HIV-1 Env Trimers Engineered as Soluble Native Spike Mimetics for Vaccine Design, Cell Rep (2015). 10.1016/j.celrep.2015.03.047. [DOI] [PMC free article] [PubMed]
- [64].Kulkarni V, Rosati M, Valentin A, Ganneru B, Singh AK, Yan J, Rolland M, Alicea C, Beach RK, Zhang GM, Le Gall S, Broderick KE, Sardesai NY, Heckerman D, Mothe B, Brander C, Weiner DB, Mullins JI, Pavlakis GN, Felber BK, HIV-1 p24gag Derived Conserved Element DNA Vaccine Increases the Breadth of Immune Response in Mice, PLoS One (2013). 10.1371/journal.pone.0060245. [DOI] [PMC free article] [PubMed]
- [65].Kulkarni V, Valentin A, Rosati M, Alicea C, Singh AK, Jalah R, Broderick KE, Sardesai NY, Le Gall S, Mothe B, Brander C, Rolland M, Mullins JI, Pavlakis GN, Felber BK, Altered response hierarchy and increased T-cell breadth upon HIV-1 conserved element DNA vaccination in macaques, PLoS One (2014). 10.1371/journal.pone.0086254. [DOI] [PMC free article] [PubMed]
- [66].Hu X, Valentin A, Dayton F, Kulkarni V, Alicea C, Rosati M, Chowdhury B, Gautam R, Broderick KE, Sardesai NY, Martin MA, Mullins JI, Pavlakis GN, Felber BK, DNA Prime-Boost Vaccine Regimen To Increase Breadth, Magnitude, and Cytotoxicity of the Cellular Immune Responses to Subdominant Gag Epitopes of Simian Immunodeficiency Virus and HIV, J. Immunol 197 (2016) 3999–4013. 10.4049/jimmunol.1600697. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [67].Kalams SA, Parker S, Jin X, Elizaga M, Metch B, Wang M, Hural J, Lubeck M, Eldridge J, Cardinali M, Blattner WA, Sobieszczyk M, Suriyanon V, Kalichman A, Weiner DB, Baden LR, Safety and immunogenicity of an HIV-1 gag DNA vaccine with or without IL-12 and/or IL-15 plasmid cytokine adjuvant in healthy, HIV-1 uninfected adults, PLoS One 7 (2012). 10.1371/journal.pone.0029231. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [68].Kalams SA, Parker SD, Elizaga M, Metch B, Edupuganti S, Hural J, De Rosa S, Carter DK, Rybczyk K, Frank I, Fuchs J, Koblin B, Kim DH, Joseph P, Keefer MC, Baden LR, Eldridge J, Boyer J, Sherwat A, Cardinali M, Allen M, Pensiero M, Butler C, Khan AS, Yan J, Sardesai NY, Kublin JG, Weiner DB, Safety and comparative immunogenicity of an HIV-1 DNA vaccine in combination with plasmid interleukin 12 and impact of intramuscular electroporation for delivery, J. Infect. Dis 208 (2013) 818–829. 10.1093/infdis/jit236. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [69].de Rosa SC, Edupuganti S, Huang Y, Han X, Elizaga M, Swann E, Polakowski L, Kalams SA, Keefer MC, Maenza J, Lu Y, Wise MC, Yan J, Morrow MP, Khan AS, Boyer JD, Humeau L, White S, Pensiero M, Sardesai NY, Bagarazzi ML, Weiner DB, Ferrari G, Tomaras GD, Montefiori DC, Corey L, McElrath MJ, Robust antibody and cellular responses induced by DNA-only vaccination for HIV, JCI Insight (2020). 10.1172/jci.insight.137079. [DOI] [PMC free article] [PubMed]
- [70].Mpendo J, Mutua G, Nyombayire J, Ingabire R, Nanvubya A, Anzala O, Karita E, Hayes P, Kopycinski J, Dally L, Hannaman D, Egan MA, Eldridge JH, Syvertsen K, Lehrman J, Rasmussen B, Gilmour J, Cox JH, Fast PE, Schmidt C, A phase I double blind, placebo-controlled, randomized study of the safety and immunogenicity of electroporated HIV DNA with or without interleukin 12 in prime-boost combinations with an Ad35 HIV vaccine in healthy HIV-seronegative african adults, PLoS One (2015). 10.1371/journal.pone.0134287. [DOI] [PMC free article] [PubMed]
- [71].Wang S, Kennedy JS, West K, Montefiori DC, Coley S, Lawrence J, Shen S, Green S, Rothman AL, Ennis FA, Arthos J, Pal R, Markham P, Lu S, Cross-subtype antibody and cellular immune responses induced by a polyvalent DNA prime-protein boost HIV-1 vaccine in healthy human volunteers, Vaccine (2008). 10.1016/j.vaccine.2007.12.024. [DOI] [PMC free article] [PubMed]
- [72].Wang S, Chou TH, Hackett A, Efros V, Wang Y, Han D, Wallace A, Chen Y, Hu G, Liu S, Clapham P, Arthos J, Montefiori D, Lu S, Screening of primary gp120 immunogens to formulate the next generation polyvalent DNA prime-protein boost HIV-1 vaccines, Hum. Vaccines Immunother (2017). 10.1080/21645515.2017.1380137. [DOI] [PMC free article] [PubMed]
- [73].Haynes BF, Fleming J, St. Clair EW, Katinger H, Stiegler G, Kunert R, Robinson J, Scearce RM, Plonk K, Staats HF, Ortel TL, Liao HX, Alam SM, Cardiolipin polyspecific autoreactivity in two broadly neutralizing HIV-1 antibodies, Science (80-. ) 308 (2005) 1906–1908. 10.1126/science.1111781. [DOI] [PubMed] [Google Scholar]
- [74].Liu M, Yang G, Wiehe K, Nicely NI, Vandergrift NA, Rountree W, Bonsignori M, Alam SM, Gao J, Haynes BF, Kelsoe G, Polyreactivity and Autoreactivity among HIV-1 Antibodies, J. Virol 89 (2015) 784–798. 10.1128/jvi.02378-14. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [75].Liao HX, Lynch R, Zhou T, Gao F, Munir Alam S, Boyd SD, Fire AZ, Roskin KM, Schramm CA, Zhang Z, Zhu J, Shapiro L, Mullikin JC, Gnanakaran S, Hraber P, Wiehe K, Kelsoe G, Yang G, Xia SM, Montefiori DC, Parks R, Lloyd KE, Scearce RM, Soderberg KA, Cohen M, Kamanga G, Louder MK, Tran LM, Chen Y, Cai F, Chen S, Moquin S, Du X, Gordon Joyce M, Srivatsan S, Zhang B, Zheng A, Shaw GM, Hahn BH, Kepler TB, Korber BTM, Kwong PD, Mascola JR, Haynes BF, Becker J, Benjamin B, Blakesley R, Bouffard G, Brooks S, Coleman H, Dekhtyar M, Gregory M, Guan X, Gupta J, Han J, Hargrove A, Ho SL, Johnson T, Legaspi R, Lovett S, Maduro Q, Masiello C, Maskeri B, McDowell J, Montemayor C, Mulliki J, Park M, Riebow N, Schandler K, Schmidt B, Sison C, Stantripop M, Thomas J, Thomas P, Vemulapalli M, Young A, Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus, Nature 496 (2013) 469–476. 10.1038/nature12053. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [76].Bonsignori M, Zhou T, Sheng Z, Chen L, Gao F, Joyce MG, Ozorowski G, Chuang GY, Schramm CA, Wiehe K, Alam SM, Bradley T, Gladden MA, Hwang KK, Iyengar S, Kumar A, Lu X, Luo K, Mangiapani MC, Parks RJ, Song H, Acharya P, Bailer RT, Cao A, Druz A, Georgiev IS, Kwon YD, Louder MK, Zhang B, Zheng A, Hill BJ, Kong R, Soto C, Mullikin JC, Douek DC, Montefiori DC, Moody MA, Shaw GM, Hahn BH, Kelsoe G, Hraber PT, Korber BT, Boyd SD, Fire AZ, Kepler TB, Shapiro L, Ward AB, Mascola JR, Liao HX, Kwong PD, Haynes BF, Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody, Cell (2016). 10.1016/j.cell.2016.02.022. [DOI] [PMC free article] [PubMed]
- [77].Jardine JG, Kulp DW, Havenar-Daughton C, Sarkar A, Briney B, Sok D, Sesterhenn F, Ereño-Orbea J, Kalyuzhniy O, Deresa I, Hu X, Spencer S, Jones M, Georgeson E, Adachi Y, Kubitz M, DeCamp AC, Julien J-P, Wilson IA, Burton DR, Crotty S, Schief WR, HIV-1 broadly neutralizing antibody precursor B cells revealed by germline-targeting immunogen., Science (80-. ) 351 (2016) 1458–1463. 10.1126/science.aad9195. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [78].Havenar-Daughton C, Sarkar A, Kulp DW, Toy L, Hu X, Deresa I, Kalyuzhniy O, Kaushik K, Upadhyay AA, Menis S, Landais E, Cao L, Diedrich JK, Kumar S, Schiffner T, Reiss SM, Seumois G, Yates JR, Paulson JC, Bosinger SE, Wilson IA, Schief WR, Crotty S, The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen., Sci. Transl. Med 10 (2018) eaat0381. 10.1126/scitranslmed.aat0381. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [79].Steichen JM, Lin Y-C, Havenar-Daughton C, Pecetta S, Ozorowski G, Willis JR, Toy L, Sok D, Liguori A, Kratochvil S, Torres JL, Kalyuzhniy O, Melzi E, Kulp DW, Raemisch S, Hu X, Bernard SM, Georgeson E, Phelps N, Adachi Y, Kubitz M, Landais E, Umotoy J, Robinson A, Briney B, Wilson IA, Burton DR, Ward AB, Crotty S, Batista FD, Schief WR, A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses, Science (80-. ) 366 (2019) 1–15. 10.1126/science.aax4380. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [80].Gao F, Weaver EA, Lu Z, Li Y, Liao H-X, Ma B, Alam SM, Scearce RM, Sutherland LL, Yu J-S, Decker JM, Shaw GM, Montefiori DC, Korber BT, Hahn BH, Haynes BF, Antigenicity and Immunogenicity of a Synthetic Human Immunodeficiency Virus Type 1 Group M Consensus Envelope Glycoprotein, J. Virol (2005). 10.1128/jvi.79.2.1154-1163.2005. [DOI] [PMC free article] [PubMed]
- [81].Yang X, Wyatt R, Sodroski J, Improved Elicitation of Neutralizing Antibodies against Primary Human Immunodeficiency Viruses by Soluble Stabilized Envelope Glycoprotein Trimers, J. Virol (2001). 10.1128/jvi.75.3.1165-1171.2001. [DOI] [PMC free article] [PubMed]
- [82].Spearman P, Lally MA, Elizaga M, Montefiori D, Tomaras GD, McElrath MJ, Hural J, De Rosa SC, Sato A, Huang Y, Frey SE, Sato P, Donnelly J, Barnett S, Corey LJ, A trimeric, V2-deleted HIV-1 envelope glycoprotein vaccine elicits potent neutralizing antibodies but limited breadth of neutralization in human volunteers, J. Infect. Dis (2011). 10.1093/infdis/jiq175. [DOI] [PMC free article] [PubMed]
- [83].Ringe RP, Sanders RW, Yasmeen A, Kim HJ, Lee JH, Cupo A, Korzun J, Derking R, Van Montfort T, Julien JP, Wilson IA, Klasse PJ, Ward AB, Moore JP, Cleavage strongly influences whether soluble HIV-1 envelope glycoprotein trimers adopt a native-like conformation, Proc. Natl. Acad. Sci. U. S. A (2013). 10.1073/pnas.1314351110. [DOI] [PMC free article] [PubMed]
- [84].Yasmeen A, Ringe R, Derking R, Cupo A, Julien JP, Burton DR, Ward AB, Wilson IA, Sanders RW, Moore JP, Klasse PJ, Differential binding of neutralizing and non-neutralizing antibodies to native-like soluble HIV-1 Env trimers, uncleaved Env proteins, and monomeric subunits, Retrovirology (2014). 10.1186/1742-4690-11-41. [DOI] [PMC free article] [PubMed]
- [85].Binley JM, Sanders RW, Clas B, Schuelke N, Master A, Guo Y, Kajumo F, Anselma DJ, Maddon PJ, Olson WC, Moore JP, A Recombinant Human Immunodeficiency Virus Type 1 Envelope Glycoprotein Complex Stabilized by an Intermolecular Disulfide Bond between the gp120 and gp41 Subunits Is an Antigenic Mimic of the Trimeric Virion-Associated Structure, J. Virol 74 (2000) 627–643. 10.1128/jvi.74.2.627-643.2000. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [86].Sanders RW, Vesanen M, Schuelke N, Master A, Schiffner L, Kalyanaraman R, Paluch M, Berkhout B, Maddon PJ, Olson WC, Lu M, Moore JP, Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1., J. Virol 76 (2002) 8875–89. 10.1128/jvi.76.17.8875-8889.2002. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [87].Julien JP, Cupo A, Sok D, Stanfield RL, Lyumkis D, Deller MC, Klasse PJ, Burton DR, Sanders RW, Moore JP, Ward AB, Wilson IA, Crystal structure of a soluble cleaved HIV-1 envelope trimer, Science (80-. ) (2013). 10.1126/science.1245625. [DOI] [PMC free article] [PubMed]
- [88].Lyumkis D, Julien JP, De Val N, Cupo A, Potter CS, Klasse PJ, Burton DR, Sanders RW, Moore JP, Carragher B, Wilson IA, Ward AB, Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer, Science (80-. ) (2013). 10.1126/science.1245627. [DOI] [PMC free article] [PubMed]
- [89].Pancera M, Zhou T, Druz A, Georgiev IS, Soto C, Gorman J, Huang J, Acharya P, Chuang GY, Ofek G, Stewart-Jones GBE, Stuckey J, Bailer RT, Joyce MG, Louder MK, Tumba N, Yang Y, Zhang B, Cohen MS, Haynes BF, Mascola JR, Morris L, Munro JB, Blanchard SC, Mothes W, Connors M, Kwong PD, Structure and immune recognition of trimeric pre-fusion HIV-1 Env, Nature (2014). 10.1038/nature13808. [DOI] [PMC free article] [PubMed]
- [90].Hoffenberg S, Powell R, Carpov A, Wagner D, Wilson A, Kosakovsky Pond S, Lindsay R, Arendt H, DeStefano J, Phogat S, Poignard P, Fling SP, Simek M, LaBranche C, Montefiori D, Wrin T, Phung P, Burton D, Koff W, King CR, Parks CL, Caulfield MJ, Identification of an HIV-1 Clade A Envelope That Exhibits Broad Antigenicity and Neutralization Sensitivity and Elicits Antibodies Targeting Three Distinct Epitopes, J. Virol 87 (2013) 5372–5383. 10.1128/jvi.02827-12. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [91].Julien J-P, Lee JH, Cupo A, Murin CD, Derking R, Hoffenberg S, Caulfield MJ, King CR, Marozsan AJ, Klasse PJ, Sanders RW, Moore JP, Wilson IA, Ward AB, Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9., Proc. Natl. Acad. Sci. U. S. A 110 (2013) 4351–4356. 10.1073/pnas.1217537110. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [92].Sanders RW, Derking R, Cupo A, Julien J-P, Yasmeen A, de Val N, Kim HJ, Blattner C, de la Peña AT, Korzun J, Golabek M, de Los Reyes K, Ketas TJ, van Gils MJ, King CR, Wilson IA, Ward AB, Klasse PJ, Moore JP, A next-generation cleaved, soluble HIV-1 Env trimer, BG505 SOSIP.664 gp140, expresses multiple epitopes for broadly neutralizing but not non-neutralizing antibodies., PLoS Pathog 9 (2013) e1003618. 10.1371/journal.ppat.1003618. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [93].Lee JH, Ozorowski G, Ward AB, Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer., Science (80-. ) 351 (2016) 1043–1048. 10.1126/science.aad2450. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [94].Julien JP, Lee JH, Ozorowski G, Hua Y, De La Peña AT, De Taeye SW, Nieusma T, Cupo A, Yasmeen A, Golabek M, Pugach P, Klasse PJ, Moore JP, Sanders RW, Ward AB, Wilson IA, Design and structure of two HIV-1 clade c SOSIP.664 trimers that increase the arsenal of native-like env immunogens, Proc. Natl. Acad. Sci. U. S. A (2015). 10.1073/pnas.1507793112. [DOI] [PMC free article] [PubMed]
- [95].De Taeye SW, Ozorowski G, Torrents De La Peña A, Guttman M, Julien JP, Van Den Kerkhof TLGM, Burger JA, Pritchard LK, Pugach P, Yasmeen A, Crampton J, Hu J, Bontjer I, Torres JL, Arendt H, Destefano J, Koff WC, Schuitemaker H, Eggink D, Berkhout B, Dean H, Labranche C, Crotty S, Crispin M, Montefiori DC, Klasse PJ, Lee KK, Moore JP, Wilson IA, Ward AB, Sanders RW, Immunogenicity of Stabilized HIV-1 Envelope Trimers with Reduced Exposure of Non-neutralizing Epitopes, Cell (2015). 10.1016/j.cell.2015.11.056. [DOI] [PMC free article] [PubMed]
- [96].Stewart-Jones GBE, Soto C, Lemmin T, Chuang GY, Druz A, Kong R, Thomas PV, Wagh K, Zhou T, Behrens AJ, Bylund T, Choi CW, Davison JR, Georgiev IS, Joyce MG, Do Kwon Y, Pancera M, Taft J, Yang Y, Zhang B, Shivatare SS, Shivatare VS, Lee CCD, Wu CY, Bewley CA, Burton DR, Koff WC, Connors M, Crispin M, Baxa U, Korber BT, Wong CH, Mascola JR, Kwong PD, Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G, Cell (2016). 10.1016/j.cell.2016.04.010. [DOI] [PMC free article] [PubMed]
- [97].Behrens A-J, Vasiljevic S, Pritchard LK, Harvey DJ, Andev RS, Krumm SA, Struwe WB, Cupo A, Kumar A, Zitzmann N, Seabright GE, Kramer HB, Spencer DIR, Royle L, Lee JH, Klasse PJ, Burton DR, Wilson IA, Ward AB, Sanders RW, Moore JP, Doores KJ, Crispin M, Composition and Antigenic Effects of Individual Glycan Sites of a Trimeric HIV-1 Envelope Glycoprotein., Cell Rep 14 (2016) 2695–2706. https://linkinghub.elsevier.com/retrieve/pii/S2211124716301796. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [98].Cao L, Diedrich JK, Kulp DW, Pauthner M, He L, Park S-KR, Sok D, Su CY, Delahunty CM, Menis S, Andrabi R, Guenaga J, Georgeson E, Kubitz M, Adachi Y, Burton DR, Schief WR, Yates JR, Paulson JC, Global site-specific N-glycosylation analysis of HIV envelope glycoprotein., Nat. Commun 8 (2017) 14913–14954. http://www.nature.com/articles/ncomms14954. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [99].Torrents de la Peña A, Rantalainen K, Cottrell CA, Allen JD, van Gils MJ, Torres JL, Crispin M, Sanders RW, Ward AB, Similarities and differences between native HIV-1 envelope glycoprotein trimers and stabilized soluble trimer mimetics, PLoS Pathog (2019). 10.1371/journal.ppat.1007920. [DOI] [PMC free article] [PubMed]
- [100].Struwe WB, Chertova E, Allen JD, Seabright GE, Watanabe Y, Harvey DJ, Medina-Ramírez M, Roser JD, Smith R, Westcott D, Keele BF, Bess JW, Sanders RW, Lifson JD, Moore JP, Crispin M, Site-Specific Glycosylation of Virion-Derived HIV-1 Env Is Mimicked by a Soluble Trimeric Immunogen., Cell Rep 24 (2018) 1958–1966.e5. https://linkinghub.elsevier.com/retrieve/pii/S2211124718311987. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [101].Sanders RW, van Gils MJ, Derking R, Sok D, Ketas TJ, Burger JA, Ozorowski G, Cupo A, Simonich C, Goo L, Arendt H, Kim HJ, Lee JH, Pugach P, Williams M, Debnath G, Moldt B, van Breemen MJ, Isik G, Medina-Ramírez M, Back JW, Koff WC, Julien J-P, Rakasz EG, Seaman MS, Guttman M, Lee KK, Klasse PJ, LaBranche C, Schief WR, Wilson IA, Overbaugh J, Burton DR, Ward AB, Montefiori DC, Dean H, Moore JP, HIV-1 VACCINES. HIV-1 neutralizing antibodies induced by native-like envelope trimers., Science (80-. ) 349 (2015) aac4223–aac4223. 10.1126/science.aac4223. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [102].Pauthner M, Havenar-Daughton C, Sok D, Nkolola JP, Bastidas R, V Boopathy A, Carnathan DG, Chandrashekar A, Cirelli KM, Cottrell CA, Eroshkin AM, Guenaga J, Kaushik K, Kulp DW, Liu J, McCoy LE, Oom AL, Ozorowski G, Post KW, Sharma SK, Steichen JM, de Taeye SW, Tokatlian T, Torrents de la Peña A, Butera ST, LaBranche CC, Montefiori DC, Silvestri G, Wilson IA, Irvine DJ, Sanders RW, Schief WR, Ward AB, Wyatt RT, Barouch DH, Crotty S, Burton DR, Elicitation of Robust Tier 2 Neutralizing Antibody Responses in Nonhuman Primates by HIV Envelope Trimer Immunization Using Optimized Approaches., Immunity 46 (2017) 1073–1088.e6. https://linkinghub.elsevier.com/retrieve/pii/S1074761317302236. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [103].Havenar-Daughton C, Carnathan DG, de la Peña AT, Pauthner M, Briney B, Reiss SM, Wood JS, Kaushik K, van Gils MJ, Rosales SL, van der Woude P, Locci M, Le KM, de Taeye SW, Sok D, Mohammed AUR, Huang J, Gumber S, Garcia A, Kasturi SP, Pulendran B, Moore JP, Ahmed R, Seumois G, Burton DR, Sanders RW, Silvestri G, Crotty S, Direct Probing of Germinal Center Responses Reveals Immunological Features and Bottlenecks for Neutralizing Antibody Responses to HIV Env Trimer, Cell Rep 17 (2016) 2195–2209. 10.1016/j.celrep.2016.10.085. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [104].Cirelli KM, Carnathan DG, Nogal B, Martin JT, Rodriguez OL, Upadhyay AA, Enemuo CA, Gebru EH, Choe Y, Viviano F, Nakao C, Pauthner MG, Reiss S, Cottrell CA, Smith ML, Bastidas R, Gibson W, Wolabaugh AN, Melo MB, Cossette B, Kumar V, Patel NB, Tokatlian T, Menis S, Kulp DW, Burton DR, Murrell B, Schief WR, Bosinger SE, Ward AB, Watson CT, Silvestri G, Irvine DJ, Crotty S, Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance., Cell 177 (2019) 1153–1171.e28. https://linkinghub.elsevier.com/retrieve/pii/S0092867419303988. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [105].McCoy LE, van Gils MJ, Ozorowski G, Messmer T, Briney B, Voss JE, Kulp DW, Macauley MS, Sok D, Pauthner M, Menis S, Cottrell CA, Torres JL, Hsueh J, Schief WR, Wilson IA, Ward AB, Sanders RW, Burton DR, Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies., Cell Rep 16 (2016) 2327–2338. https://linkinghub.elsevier.com/retrieve/pii/S2211124716310208. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [106].S.C.T. Partnership, Efficacy and safety of RTS,S/AS01 malaria vaccine with or without a booster dose in infants and children in Africa: Final results of a phase 3, individually randomised, controlled trial, Lancet 386 (2015) 31–45. 10.1016/S0140-6736(15)60721-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [107].Lal H, Cunningham AL, Godeaux O, Chlibek R, Diez-Domingo J, Hwang S-J, Levin MJ, McElhaney JE, Poder A, Puig-Barberà J, Vesikari T, Watanabe D, Weckx L, Zahaf T, Heineman TC, Efficacy of an Adjuvanted Herpes Zoster Subunit Vaccine in Older Adults, N. Engl. J. Med (2015). 10.1056/nejmoa1501184. [DOI] [PubMed]
- [108].Keech C, Albert G, Cho I, Robertson A, Reed P, Neal S, Plested JS, Zhu M, Cloney-Clark S, Zhou H, Smith G, Patel N, Frieman MB, Haupt RE, Logue J, McGrath M, Weston S, Piedra PA, Desai C, Callahan K, Lewis M, Price-Abbott P, Formica N, Shinde V, Fries L, Lickliter JD, Griffin P, Wilkinson B, Glenn GM, Phase 1–2 Trial of a SARS-CoV-2 Recombinant Spike Protein Nanoparticle Vaccine, N. Engl. J. Med 383 (2020) 2320–2332. 10.1056/nejmoa2026920. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [109].Hu JK, Crampton JC, Cupo A, Ketas T, van Gils MJ, Sliepen K, de Taeye SW, Sok D, Ozorowski G, Deresa I, Stanfield R, Ward AB, Burton DR, Klasse PJ, Sanders RW, Moore JP, Crotty S, Murine Antibody Responses to Cleaved Soluble HIV-1 Envelope Trimers Are Highly Restricted in Specificity, J. Virol 89 (2015) 10383–10398. 10.1128/JVI.01653-15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [110].Liu J, Bartesaghi A, Borgnia MJ, Sapiro G, Subramaniam S, Molecular architecture of native HIV-1 gp120 trimers, Nature 455 (2008) 109–113. 10.1038/nature07159. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [111].Thali M, Moore JP, Furman C, Charles M, Ho DD, Robinson J, Sodroski J, Characterization of conserved human immunodeficiency virus type 1 gp120 neutralization epitopes exposed upon gp120-CD4 binding., J. Virol 67 (1993) 3978–3988. 10.1128/jvi.67.7.3978-3988.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [112].Wyatt R, Moore J, Accola M, Desjardin E, Robinson J, Sodroski J, Involvement of the V1/V2 variable loop structure in the exposure of human immunodeficiency virus type 1 gp120 epitopes induced by receptor binding., J. Virol 69 (1995) 5723–5733. 10.1128/jvi.69.9.5723-5733.1995. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [113].Xiang SH, Doka N, Choudhary RK, Sodroski J, Robinson JE, Characterization of CD4-induced epitopes on the HIV type 1 gp120 envelope glycoprotein recognized by neutralizing human monoclonal antibodies, AIDS Res. Hum. Retroviruses 18 (2002) 1207–1217. 10.1089/08892220260387959. [DOI] [PubMed] [Google Scholar]
- [114].Kulp DW, Steichen JM, Pauthner M, Hu X, Schiffner T, Liguori A, Cottrell CA, Havenar-Daughton C, Ozorowski G, Georgeson E, Kalyuzhniy O, Willis JR, Kubitz M, Adachi Y, Reiss SM, Shin M, de Val N, Ward AB, Crotty S, Burton DR, Schief WR, Structure-based design of native-like HIV-1 envelope trimers to silence non-neutralizing epitopes and eliminate CD4 binding., Nat. Commun 8 (2017) 1614–1655. http://www.nature.com/articles/s41467-017-01549-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [115].Schiffner T, Pallesen J, Russell RA, Dodd J, de Val N, LaBranche CC, Montefiori D, Tomaras GD, Shen X, Harris SL, Moghaddam AE, Kalyuzhniy O, Sanders RW, McCoy LE, Moore JP, Ward AB, Sattentau QJ, Structural and immunologic correlates of chemically stabilized HIV-1 envelope glycoproteins, PLoS Pathog (2018). 10.1371/journal.ppat.1006986. [DOI] [PMC free article] [PubMed]
- [116].Torrents De La Peña A, Sanders RW, Stabilizing HIV-1 envelope glycoprotein trimers to induce neutralizing antibodies Marit van Gils, m.j.vangils@amc.uva.nl; Rogier W Sanders, rws2002@med.cornell.edu, Retrovirology 15 (2018) 1–11. 10.1186/s12977-018-0445-y. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [117].Do Kwon Y, Pancera M, Acharya P, Georgiev IS, Crooks ET, Gorman J, Joyce MG, Guttman M, Ma X, Narpala S, Soto C, Terry DS, Yang Y, Zhou T, Ahlsen G, Bailer RT, Chambers M, Chuang GY, Doria-Rose NA, Druz A, Hallen MA, Harned A, Kirys T, Louder MK, O’Dell S, Ofek G, Osawa K, Prabhakaran M, Sastry M, Stewart-Jones GBE, Stuckey J, Thomas PV, Tittley T, Williams C, Zhang B, Zhao H, Zhou Z, Donald BR, Lee LK, Zolla-Pazner S, Baxa U, Schön A, Freire E, Shapiro L, Lee KK, Arthos J, Munro JB, Blanchard SC, Mothes W, Binley JM, McDermott AB, Mascola JR, Kwong PD, Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env, Nat. Struct. Mol. Biol 22 (2015) 522–531. 10.1038/nsmb.3051. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [118].Chuang G-Y, Geng H, Pancera M, Xu K, Cheng C, Acharya P, Chambers M, Druz A, Tsybovsky Y, Wanninger TG, Yang Y, Doria-Rose NA, Georgiev IS, Gorman J, Joyce MG, O’Dell S, Zhou T, McDermott AB, Mascola JR, Kwong PD, Structure-Based Design of a Soluble Prefusion-Closed HIV-1 Env Trimer with Reduced CD4 Affinity and Improved Immunogenicity., J. Virol 91 (2017) 1–18. 10.1128/JVI.02268-16. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [119].Yang YR, McCoy LE, van Gils MJ, Andrabi R, Turner HL, Yuan M, Cottrell CA, Ozorowski G, Voss J, Pauthner M, Polveroni TM, Messmer T, Wilson IA, Sanders RW, Burton DR, Ward AB, Autologous Antibody Responses to an HIV Envelope Glycan Hole Are Not Easily Broadened in Rabbits, J. Virol 94 (2020) 1–15. 10.1128/jvi.01861-19. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [120].Crooks ET, Osawa K, Tong T, Grimley SL, Dai YD, Whalen RG, Kulp DW, Menis S, Schief WR, Binley JM, Effects of partially dismantling the CD4 binding site glycan fence of HIV-1 Envelope glycoprotein trimers on neutralizing antibody induction, Virology 505 (2017) 193–209. 10.1016/j.virol.2017.02.024. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [121].Klasse PJ, LaBranche CC, Ketas TJ, Ozorowski G, Cupo A, Pugach P, Ringe RP, Golabek M, van Gils MJ, Guttman M, Lee KK, Wilson IA, Butera ST, Ward AB, Montefiori DC, Sanders RW, Moore JP, Sequential and Simultaneous Immunization of Rabbits with HIV-1 Envelope Glycoprotein SOSIP.664 Trimers from Clades A, B and C, PLoS Pathog (2016). 10.1371/journal.ppat.1005864. [DOI] [PMC free article] [PubMed]
- [122].Zhao F, Joyce C, Burns A, Nogal B, Cottrell CA, Ramos A, Biddle T, Pauthner M, Nedellec R, Qureshi H, Mason R, Landais E, Briney B, Ward AB, Burton DR, Sok D, Mapping Neutralizing Antibody Epitope Specificities to an HIV Env Trimer in Immunized and in Infected Rhesus Macaques, Cell Rep 32 (2020) 108122. 10.1016/j.celrep.2020.108122. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [123].Klasse PJ, Ketas TJ, Cottrell CA, Ozorowski G, Debnath G, Camara D, Francomano E, Pugach P, Ringe RP, LaBranche CC, van Gils MJ, Bricault CA, Barouch DH, Crotty S, Silvestri G, Kasturi S, Pulendran B, Wilson IA, Montefiori DC, Sanders RW, Ward AB, Moore JP, Epitopes for neutralizing antibodies induced by HIV-1 envelope glycoprotein BG505 SOSIP trimers in rabbits and macaques, PLoS Pathog 14 (2018) e1006913–20. 10.1371/journal.ppat.1006913. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [124].Cottrell CA, van Schooten J, Bowman CA, Yuan M, Oyen D, Shin M, Morpurgo R, van der Woude P, van Breemen M, Torres JL, Patel R, Gross J, Sewall LM, Copps J, Ozorowski G, Nogal B, Sok D, Rakasz EG, Labranche C, Vigdorovich V, Christley S, Carnathan DG, Sather DN, Montefiori D, Silvestri G, Burton DR, Moore JP, Wilson IA, Sanders RW, Ward AB, van Gils MJ, Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates, PLoS Pathog 16 (2020) 1–23. 10.1371/journal.ppat.1008753. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [125].Sliepen K, Han BW, Bontjer I, Mooij P, Garces F, Behrens AJ, Rantalainen K, Kumar S, Sarkar A, Brouwer PJM, Hua Y, Tolazzi M, Schermer E, Torres JL, Ozorowski G, van der Woude P, de la Peña AT, van Breemen MJ, Camacho-Sánchez JM, Burger JA, Medina-Ramírez M, González N, Alcami J, LaBranche C, Scarlatti G, van Gils MJ, Crispin M, Montefiori DC, Ward AB, Koopman G, Moore JP, Shattock RJ, Bogers WM, Wilson IA, Sanders RW, Structure and immunogenicity of a stabilized HIV-1 envelope trimer based on a group-M consensus sequence, Nat. Commun 10 (2019). 10.1038/s41467-019-10262-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [126].Sarkar A, Bale S, Behrens AJ, Kumar S, Sharma SK, De Val N, Pallesen J, Irimia A, Diwanji DC, Stanfield RL, Ward AB, Crispin M, Wyatt RT, Wilson IA, Structure of a cleavage-independent HIV Env recapitulates the glycoprotein architecture of the native cleaved trimer, Nat. Commun (2018). 10.1038/s41467-018-04272-y. [DOI] [PMC free article] [PubMed]
- [127].Yang L, Sharma SK, Cottrell C, Guenaga J, Tran K, Wilson R, Behrens AJ, Crispin M, de Val N, Wyatt RT, Structure-guided redesign improves NFL HIV Env Trimer integrity and identifies an inter-protomer disulfide permitting post-expression cleavage, Front. Immunol (2018). 10.3389/fimmu.2018.01631. [DOI] [PMC free article] [PubMed]
- [128].Kong L, He L, de Val N, Vora N, Morris CD, Azadnia P, Sok D, Zhou B, Burton DR, Ward AB, Wilson IA, Zhu J, Uncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability, Nat. Commun 7 (2016) 12040. 10.1038/ncomms12040. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [129].Dubrovskaya V, Tran K, Ozorowski G, Guenaga J, Wilson R, Bale S, Cottrell CA, Turner HL, Seabright G, O’Dell S, Torres JL, Yang L, Feng Y, Leaman DP, Vázquez Bernat N, Liban T, Louder M, McKee K, Bailer RT, Movsesyan A, Doria-Rose NA, Pancera M, Karlsson Hedestam GB, Zwick MB, Crispin M, Mascola JR, Ward AB, Wyatt RT, Vaccination with Glycan-Modified HIV NFL Envelope Trimer-Liposomes Elicits Broadly Neutralizing Antibodies to Multiple Sites of Vulnerability, Immunity 51 (2019) 915–929.e7. 10.1016/j.immuni.2019.10.008. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [130].He L, Kumar S, Allen JD, Huang D, Lin X, Mann CJ, Saye-Francisco KL, Copps J, Sarkar A, Blizard GS, Ozorowski G, Sok D, Crispin M, Ward AB, Nemazee D, Burton DR, Wilson IA, Zhu J, HIV-1 vaccine design through minimizing envelope metastability, Sci. Adv (2018). 10.1126/sciadv.aau6769. [DOI] [PMC free article] [PubMed]
- [131].Wieczorek L, Krebs SJ, Kalyanaraman V, Whitney S, Tovanabutra S, Moscoso CG, Sanders-Buell E, Williams C, Slike B, Molnar S, Dussupt V, Alam SM, Chenine A-L, Tong T, Hill EL, Liao H-X, Hoelscher M, Maboko L, Zolla-Pazner S, Haynes BF, Pensiero M, McCutchan F, Malek-Salehi S, Cheng RH, Robb ML, VanCott T, Michael NL, Marovich MA, Alving CR, Matyas GR, Rao M, Polonis VR, Comparable Antigenicity and Immunogenicity of Oligomeric Forms of a Novel, Acute HIV-1 Subtype C gp145 Envelope for Use in Preclinical and Clinical Vaccine Research, J. Virol 89 (2015) 7478–7493. 10.1128/jvi.00412-15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [132].Walker LM, Huber M, Doores KJ, Falkowska E, Pejchal R, Julien JP, Wang SK, Ramos A, Chan-Hui PY, Moyle M, Mitcham JL, Hammond PW, Olsen OA, Phung P, Fling S, Wong CH, Phogat S, Wrin T, Simek MD, Koff WC, Wilson IA, Burton DR, Poignard P, Broad neutralization coverage of HIV by multiple highly potent antibodies, Nature 477 (2011) 466–470. 10.1038/nature10373. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [133].Blattner C, Lee JH, Sliepen K, Derking R, Falkowska E, delaPeña AT, Cupo A, Julien JP, vanGils M, Lee PS, Peng W, Paulson JC, Poignard P, Burton DR, Moore JP, Sanders RW, Wilson IA, Ward AB, Structural delineation of a quaternary, cleavage-dependent epitope at the gp41-gp120 interface on intact HIV-1 env trimers, Immunity (2014). 10.1016/j.immuni.2014.04.008. [DOI] [PMC free article] [PubMed]
- [134].Falkowska E, Le KM, Ramos A, Doores KJ, Lee JH, Blattner C, Ramirez A, Derking R, vanGils MJ, Liang CH, Mcbride R, von Bredow B, Shivatare SS, Wu CY, Chan-Hui PY, Liu Y, Feizi T, Zwick MB, Koff WC, Seaman MS, Swiderek K, Moore JP, Evans D, Paulson JC, Wong CH, Ward AB, Wilson IA, Sanders RW, Poignard P, Burton DR, Broadly neutralizing HIV antibodies define a glycan-dependent epitope on the prefusion conformation of gp41 on cleaved envelope trimers, Immunity 40 (2014) 657–668. 10.1016/j.immuni.2014.04.009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [135].Nogal B, Bianchi M, Cottrell CA, Kirchdoerfer RN, Sewall LM, Turner HL, Zhao F, Sok D, Burton DR, Hangartner L, Ward AB, Mapping Polyclonal Antibody Responses in Non-human Primates Vaccinated with HIV Env Trimer Subunit Vaccines, Cell Rep 30 (2020) 3755–3765.e7. 10.1016/j.celrep.2020.02.061. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [136].Bianchi M, Turner HL, Nogal B, Cottrell CA, Oyen D, Pauthner M, Bastidas R, Nedellec R, McCoy LE, Wilson IA, Burton DR, Ward AB, Hangartner L, Electron-Microscopy-Based Epitope Mapping Defines Specificities of Polyclonal Antibodies Elicited during HIV-1 BG505 Envelope Trimer Immunization, Immunity 49 (2018) 288–300.e8. 10.1016/j.immuni.2018.07.009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [137].Hoot S, McGuire AT, Cohen KW, Strong RK, Hangartner L, Klein F, Diskin R, Scheid JF, Sather DN, Burton DR, Stamatatos L, Recombinant HIV Envelope Proteins Fail to Engage Germline Versions of Anti-CD4bs bNAbs, PLoS Pathog (2013). 10.1371/journal.ppat.1003106. [DOI] [PMC free article] [PubMed]
- [138].Jardine J, Julien J-P, Menis S, Ota T, Kalyuzhniy O, McGuire A, Sok D, Huang P-S, MacPherson S, Jones M, Nieusma T, Mathison J, Baker D, Ward AB, Burton DR, Stamatatos L, Nemazee D, Wilson IA, Schief WR, Rational HIV immunogen design to target specific germline B cell receptors., Science (80-. ) 340 (2013) 711–716. 10.1126/science.1234150. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [139].Sliepen K, Medina-Ramírez M, Yasmeen A, Moore JP, Klasse PJ, Sanders RW, Binding of inferred germline precursors of broadly neutralizing HIV-1 antibodies to native-like envelope trimers, Virology 486 (2015) 116–120. 10.1016/j.virol.2015.08.002. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [140].Stamatatos L, Pancera M, McGuire AT, Germline-targeting immunogens, Immunol. Rev 275 (2017) 203–216. 10.1111/imr.12483. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [141].Burton DR, Advancing an HIV vaccine; advancing vaccinology, Nat. Rev. Immunol (2019). 10.1038/s41577-018-0103-6. [DOI] [PMC free article] [PubMed]
- [142].Zhou T, Lynch RM, Chen L, Acharya P, Wu X, Doria-Rose NA, Joyce MG, Lingwood D, Soto C, Bailer RT, Ernandes MJ, Kong R, Longo NS, Louder MK, McKee K, O’Dell S, Schmidt SD, Tran L, Yang Z, Druz A, Luongo TS, Moquin S, Srivatsan S, Yang Y, Zhang B, Zheng A, Pancera M, Kirys T, Georgiev IS, Gindin T, Peng H-P, Yang A-S, Program NCS, Mullikin JC, Gray MD, Stamatatos L, Burton DR, Koff WC, Cohen MS, Haynes BF, Casazza JP, Connors M, Corti D, Lanzavecchia A, Sattentau QJ, Weiss RA, West AP, Björkman PJ, Scheid JF, Nussenzweig MC, Shapiro L, Mascola JR, Kwong PD, Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors., Cell 161 (2015) 1280–1292. https://linkinghub.elsevier.com/retrieve/pii/S0092867415005541. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [143].West AP, Diskin R, Nussenzweig MC, Björkman PJ, Structural basis for germ-line gene usage of a potent class of antibodies targeting the CD4-binding site of HIV-1 gp120., Proc. Natl. Acad. Sci. U. S. A 109 (2012) E2083–90. 10.1073/pnas.1208984109. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [144].Wu X, Zhou T, Zhu J, Zhang B, Georgiev I, Wang C, Chen X, Longo NS, Louder M, McKee K, O’Dell S, Perfetto S, Schmidt SD, Shi W, Wu L, Yang Y, Yang ZY, Yang Z, Zhang Z, Bonsignori M, Crump JA, Kapiga SH, Sam NE, Haynes BF, Simek M, Burton DR, Koff WC, Doria-Rose NA, Connors M, Mullikin JC, Nabel GJ, Roederer M, Shapiro L, Kwong PD, Mascola JR, Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing, Science (80-. ) (2011). 10.1126/science.1207532. [DOI] [PMC free article] [PubMed]
- [145].Sok D, Briney B, Jardine JG, Kulp DW, Menis S, Pauthner M, Wood A, Lee EC, Le KM, Jones M, Ramos A, Kalyuzhniy O, Adachi Y, Kubitz M, MacPherson S, Bradley A, Friedrich GA, Schief WR, Burton DR, Priming HIV-1 broadly neutralizing antibody precursors in human Ig loci transgenic mice, Science (80-. ) 353 (2016) 1557–1560. 10.1126/science.aah3945. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [146].Jardine JG, Ota T, Sok D, Pauthner M, Kulp DW, Kalyuzhniy O, Skog PD, Thinnes TC, Bhullar D, Briney B, Menis S, Jones M, Kubitz M, Spencer S, Adachi Y, Burton DR, Schief WR, Nemazee D, HIV-1 VACCINES. Priming a broadly neutralizing antibody response to HIV-1 using a germline-targeting immunogen., Science (80-. ) 349 (2015) 156–161. 10.1126/science.aac5894. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [147].Briney B, Sok D, Jardine JG, Kulp DW, Skog P, Menis S, Jacak R, Kalyuzhniy O, de Val N, Sesterhenn F, Le KM, Ramos A, Jones M, Saye-Francisco KL, Blane TR, Spencer S, Georgeson E, Hu X, Ozorowski G, Adachi Y, Kubitz M, Sarkar A, Wilson IA, Ward AB, Nemazee D, Burton DR, Schief WR, Tailored Immunogens Direct Affinity Maturation toward HIV Neutralizing Antibodies., Cell 166 (2016) 1459–1470.e11. https://linkinghub.elsevier.com/retrieve/pii/S0092867416310546. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [148].Tian M, Cheng C, Chen X, Duan H, Cheng H-L, Dao M, Sheng Z, Kimble M, Wang L, Lin S, Schmidt SD, Du Z, Joyce MG, Chen Y, DeKosky BJ, Chen Y, Normandin E, Cantor E, Chen RE, Doria-Rose NA, Zhang Y, Shi W, Kong W-P, Choe M, Henry AR, Laboune F, Georgiev IS, Huang P-Y, Jain S, McGuire AT, Georgeson E, Menis S, Douek DC, Schief WR, Stamatatos L, Kwong PD, Shapiro L, Haynes BF, Mascola JR, Alt FW, Induction of HIV Neutralizing Antibody Lineages in Mice with Diverse Precursor Repertoires., Cell 166 (2016) 1471–1484.e18. https://linkinghub.elsevier.com/retrieve/pii/S0092867416309758. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [149].Abbott RK, Lee JH, Menis S, Skog P, Rossi M, Ota T, Kulp DW, Bhullar D, Kalyuzhniy O, Havenar-Daughton C, Schief WR, Nemazee D, Crotty S, Precursor Frequency and Affinity Determine B Cell Competitive Fitness in Germinal Centers, Tested with Germline-Targeting HIV Vaccine Immunogens., Immunity 48 (2018) 133–146.e6. https://linkinghub.elsevier.com/retrieve/pii/S1074761317305241. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [150].Dosenovic P, von Boehmer L, Escolano A, Jardine J, Freund NT, Gitlin AD, McGuire AT, Kulp DW, Oliveira T, Scharf L, Pietzsch J, Gray MD, Cupo A, van Gils MJ, Yao K-H, Liu C, Gazumyan A, Seaman MS, Björkman PJ, Sanders RW, Moore JP, Stamatatos L, Schief WR, Nussenzweig MC, Immunization for HIV-1 Broadly Neutralizing Antibodies in Human Ig Knockin Mice, Cell 161 (2015) 1505–1515. 10.1016/j.cell.2015.06.003. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [151].Duan H, Chen X, Boyington JC, Cheng C, Zhang Y, Jafari AJ, Stephens T, Tsybovsky Y, Kalyuzhniy O, Zhao P, Menis S, Nason MC, Normandin E, Mukhamedova M, DeKosky BJ, Wells L, Schief WR, Tian M, Alt FW, Kwong PD, Mascola JR, Glycan Masking Focuses Immune Responses to the HIV-1 CD4-Binding Site and Enhances Elicitation of VRC01-Class Precursor Antibodies, Immunity 49 (2018) 301–311.e5. 10.1016/j.immuni.2018.07.005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [152].Lin YR, Parks KR, Weidle C, Naidu AS, Khechaduri A, Riker AO, Takushi B, Chun JH, Borst AJ, Veesler D, Stuart A, Agrawal P, Gray M, Pancera M, Huang PS, Stamatatos L, HIV-1 VRC01 Germline-Targeting Immunogens Select Distinct Epitope-Specific B Cell Receptors, Immunity (2020). 10.1016/j.immuni.2020.09.007. [DOI] [PMC free article] [PubMed]
- [153].Huang D, Abbott R, Havenar-Daughton C, Skog P, Al-Kolla R, Groschel B, Blane T, Menis S, Tran JT, Thinnes T, Volpi S, Pintea M, Voss J, Phelps N, Tingle R, Rodriguez A, Martin G, Kupryianov S, Schief W, Nemazee D, Crotty S, B cells expressing authentic naive human VRC01-class BCRs can be primed and recruited to germinal centers in multiple independent mouse models, (2020). 10.1101/2020.02.24.963629. [DOI] [PMC free article] [PubMed]
- [154].Kato Y, Abbott RK, Freeman BL, Haupt S, Groschel B, Silva M, Menis S, Irvine DJ, Schief WR, Crotty S, Multifaceted Effects of Antigen Valency on B Cell Response Composition and Differentiation In Vivo, Immunity 53 (2020) 548–563.e8. 10.1016/j.immuni.2020.08.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [155].Chen X, Zhou T, Schmidt SD, Duan H, Cheng C, Chuang G, Gu Y, Louder MK, Lin BC, Shen C-H, Sheng Z, Zheng MX, Doria-Rose NA, Joyce MG, Shapiro L, Tian M, Alt FW, Kwong PD, Mascola JR, Vaccination induces maturation in a mouse model of diverse unmutated VRC01-class precursors to HIV-neutralizing antibodies with >50% breadth, Immunity (2021) 1–16. 10.1016/j.immuni.2020.12.014. [DOI] [PMC free article] [PubMed]
- [156].Schief WR, Germline-targeting of the CD4 binding site by eOD-GT8, in: HIVR4P Early Vaccine Clin. Stud. Nativ. Envel Trimers Germline-Targeting Immunogens, 2021. [Google Scholar]
- [157].Melo M, Porter E, Zhang Y, Silva M, Li N, Dobosh B, Liguori A, Skog P, Landais E, Menis S, Sok D, Nemazee D, Schief WR, Weiss R, Irvine DJ, Immunogenicity of RNA Replicons Encoding HIV Env Immunogens Designed for Self-Assembly into Nanoparticles, Mol. Ther 27 (2019) 2080–2090. 10.1016/j.ymthe.2019.08.007. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [158].Polack FP, Thomas SJ, Kitchin N, Absalon J, Gurtman A, Lockhart S, Perez JL, Pérez Marc G, Moreira ED, Zerbini C, Bailey R, Swanson KA, Roychoudhury S, Koury K, Li P, V Kalina W, Cooper D, Frenck RW, Hammitt LL, Türeci Ö, Nell H, Schaefer A, Ünal S, Tresnan DB, Mather S, Dormitzer PR, Şahin U, Jansen KU, Gruber WC, C4591001 Clinical Trial Group, Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine., N. Engl. J. Med (2020) 2603–2615. 10.1056/NEJMoa2034577. [DOI] [PMC free article] [PubMed]
- [159].Spector SA, Rouphael N, Creech CB, Mcgettigan J, Khetan S, Segall N, Solis J, Brosz A, Fierro C, Schwartz H, Neuzil K, Corey L, Gilbert P, Janes H, Follmann D, Marovich M, Mascola J, Polakowski L, Ledgerwood J, Graham BS, Bennett H, Pajon R, Knightly C, Leav B, Deng W, Zhou H, Han S, Ivarsson M, Miller J, Zaks T, Study C, Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine, (2020) 1–14. 10.1056/NEJMoa2035389. [DOI]
- [160].Medina-Ramírez M, Garces F, Escolano A, Skog P, de Taeye SW, Del Moral-Sanchez I, McGuire AT, Yasmeen A, Behrens A-J, Ozorowski G, van den Kerkhof TLGM, Freund NT, Dosenovic P, Hua Y, Gitlin AD, Cupo A, van der Woude P, Golabek M, Sliepen K, Blane T, Kootstra N, van Breemen MJ, Pritchard LK, Stanfield RL, Crispin M, Ward AB, Stamatatos L, Klasse PJ, Moore JP, Nemazee D, Nussenzweig MC, Wilson IA, Sanders RW, Design and crystal structure of a native-like HIV-1 envelope trimer that engages multiple broadly neutralizing antibody precursors in vivo., J. Exp. Med 214 (2017) 2573–2590. https://rupress.org/jem/article/214/9/2573/42467/Design-and-crystal-structure-of-a-nativelike-HIV1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [161].McGuire AT, Gray MD, Dosenovic P, Gitlin AD, Freund NT, Petersen J, Correnti C, Johnsen W, Kegel R, Stuart AB, Glenn J, Seaman MS, Schief WR, Strong RK, Nussenzweig MC, Stamatatos L, Specifically modified Env immunogens activate B-cell precursors of broadly neutralizing HIV-1 antibodies in transgenic mice, Nat. Commun (2019) 1–10. https://www.nature.com/articles/ncomms10618.pdf. [DOI] [PMC free article] [PubMed]
- [162].Parks KR, MacCamy AJ, Trichka J, Gray M, Weidle C, Borst AJ, Khechaduri A, Takushi B, Agrawal P, Guenaga J, Wyatt RT, Coler R, Seaman M, LaBranche C, Montefiori DC, Veesler D, Pancera M, McGuire A, Stamatatos L, Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization., Cell Rep 29 (2019) 3060–3072.e7. https://linkinghub.elsevier.com/retrieve/pii/S2211124719313932. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [163].Freund NT, Wang H, Scharf L, Nogueira L, Horwitz JA, Bar-On Y, Golijanin J, Sievers SA, Sok D, Cai H, Lorenzi JCC, Halper-Stromberg A, Toth I, Piechocka-Trocha A, Gristick HB, Van Gils MJ, Sanders RW, Wang LX, Seaman MS, Burton DR, Gazumyan A, Walker BD, West AP, Bjorkman PJ, Nussenzweig MC, Coexistence of potent HIV-1 broadly neutralizing antibodies and antibody-sensitive viruses in a viremic controller, Sci. Transl. Med 9 (2017) 1–14. 10.1126/scitranslmed.aal2144. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [164].Bonsignori M, Kreider EF, Fera D, Meyerhoff RR, Bradley T, Wiehe K, Alam SM, Aussedat B, Walkowicz WE, Hwang KK, Saunders KO, Zhang R, Gladden MA, Monroe A, Kumar A, Xia SM, Cooper M, Louder MK, McKee K, Bailer RT, Pier BW, Jette CA, Kelsoe G, Williams WB, Morris L, Kappes J, Wagh K, Kamanga G, Cohen MS, Hraber PT, Montefiori DC, Trama A, Liao HX, Kepler TB, Moody MA, Gao F, Danishefsky SJ, Mascola JR, Shaw GM, Hahn BH, Harrison SC, Korber BT, Haynes BF, Staged induction of HIV-1 glycan-dependent broadly neutralizing antibodies, Sci. Transl. Med (2017). 10.1126/scitranslmed.aai7514. [DOI] [PMC free article] [PubMed]
- [165].MacLeod DT, Choi NM, Briney B, Garces F, Ver LS, Landais E, Murrell B, Wrin T, Kilembe W, Liang CH, Ramos A, Bian CB, Wickramasinghe L, Kong L, Eren K, Wu CY, Wong CH, Kosakovsky Pond SL, Wilson IA, Burton DR, Poignard P, The IAVI Protocol C Investigators, Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch, Immunity 44 (2016) 1215–1226. 10.1016/j.immuni.2016.04.016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [166].Simonich CAA, Williams KLL, Verkerke HPP, Williams JAA, Nduati R, Lee KKK, Overbaugh J, HIV-1 Neutralizing Antibodies with Limited Hypermutation from an Infant, Cell (2016). 10.1016/j.cell.2016.05.055. [DOI] [PMC free article] [PubMed]
- [167].Steichen JM, Kulp DW, Tokatlian T, Escolano A, Dosenovic P, Stanfield RL, McCoy LE, Ozorowski G, Hu X, Kalyuzhniy O, Briney B, Schiffner T, Garces F, Freund NT, Gitlin AD, Menis S, Georgeson E, Kubitz M, Adachi Y, Jones M, Mutafyan AA, Yun DS, Mayer CT, Ward AB, Burton DR, Wilson IA, Irvine DJ, Nussenzweig MC, Schief WR, HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies., Immunity 45 (2016) 483–496. https://linkinghub.elsevier.com/retrieve/pii/S1074761316303405. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [168].Sok D, Laserson U, Laserson J, Liu Y, Vigneault F, Julien JP, Briney B, Ramos A, Saye KF, Le K, Mahan A, Wang S, Kardar M, Yaari G, Walker LM, Simen BB, St. John EP, Chan-Hui PY, Swiderek K, Kleinstein SH, Alter G, Seaman MS, Chakraborty AK, Koller D, Wilson IA, Church GM, Burton DR, Poignard P, The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies, PLoS Pathog (2013). 10.1371/journal.ppat.1003754. [DOI] [PMC free article] [PubMed]
- [169].Escolano A, Steichen JM, Dosenovic P, Kulp DW, Golijanin J, Sok D, Freund NT, Gitlin AD, Oliveira T, Araki T, Lowe S, Chen ST, Heinemann J, Yao KH, Georgeson E, Saye-Francisco KL, Gazumyan A, Adachi Y, Kubitz M, Burton DR, Schief WR, Nussenzweig MC, Sequential Immunization Elicits Broadly Neutralizing Anti-HIV-1 Antibodies in Ig Knockin Mice, Cell 166 (2016) 1445–1458.e12. 10.1016/j.cell.2016.07.030. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [170].Escolano A, Gristick HB, Abernathy ME, Merkenschlager J, Gautam R, Oliveira TY, Pai J, West AP, Barnes CO, Cohen AA, Wang H, Golijanin J, Yost D, Keeffe JR, Wang Z, Zhao P, Yao KH, Bauer J, Nogueira L, Gao H, Voll AV, Montefiori DC, Seaman MS, Gazumyan A, Silva M, McGuire AT, Stamatatos L, Irvine DJ, Wells L, Martin MA, Bjorkman PJ, Nussenzweig MC, Immunization expands B cells specific to HIV-1 V3 glycan in mice and macaques, Nature (2019). 10.1038/s41586-019-1250-z. [DOI] [PMC free article] [PubMed]
- [171].Garces F, Lee JH, de Val N, Torrents de la Pena A, Kong L, Puchades C, Hua Y, Stanfield RL, Burton DR, Moore JP, Sanders RW, Ward AB, Wilson IA, Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans, Immunity (2015). 10.1016/j.immuni.2015.11.007. [DOI] [PMC free article] [PubMed]
- [172].Barnes CO, Gristick HB, Freund NT, Escolano A, Lyubimov AY, Hartweger H, West AP, Cohen AE, Nussenzweig MC, Bjorkman PJ, Structural characterization of a highly-potent V3-glycan broadly neutralizing antibody bound to natively-glycosylated HIV-1 envelope, Nat. Commun (2018). 10.1038/s41467-018-03632-y. [DOI] [PMC free article] [PubMed]
- [173].Buchacher A, Predl R, Strutzenberger K, Steinfellner W, Trkola A, Purtscher M, Gruber G, Tauer C, Steindl F, Jungbauer A, Katinger H, Generation of Human Monoclonal Antibodies against HIV-1 Proteins; Electrofusion and Epstein-Barr Virus Transformation for Peripheral Blood Lymphocyte Immortalization, AIDS Res. Hum. Retroviruses 10 (1994) 359–369. 10.1089/aid.1994.10.359. [DOI] [PubMed] [Google Scholar]
- [174].Muster T, Steindl F, Purtscher M, Trkola A, Klima A, Himmler G, Rüker F, Katinger H, A conserved neutralizing epitope on gp41 of human immunodeficiency virus type 1., J. Virol (1993). 10.1128/jvi.67.11.6642-6647.1993. [DOI] [PMC free article] [PubMed]
- [175].Zwick MB, Labrijn AF, Wang M, Spenlehauer C, Saphire EO, Binley JM, Moore JP, Stiegler G, Katinger H, Burton DR, Parren PWHI, Broadly Neutralizing Antibodies Targeted to the Membrane-Proximal External Region of Human Immunodeficiency Virus Type 1 Glycoprotein gp41, J. Virol 75 (2001) 10892–10905. 10.1128/jvi.75.22.10892-10905.2001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [176].Huang J, Ofek G, Laub L, Louder MK, Doria-Rose NA, Longo NS, Imamichi H, Bailer RT, Chakrabarti B, Sharma SK, Alam SM, Wang T, Yang Y, Zhang B, Migueles SA, Wyatt R, Haynes BF, Kwong PD, Mascola JR, Connors M, Broad and potent neutralization of HIV-1 by a gp41-specific human antibody, Nature (2012). 10.1038/nature11544. [DOI] [PMC free article] [PubMed]
- [177].Williams LTD, Ofek G, Schätzle S, McDaniel JR, Lu X, Nicely NI, Wu L, Lougheed CS, Bradley T, Louder MK, McKee K, Bailer RT, O’Dell S, Georgiev IS, Seaman MS, Parks RJ, Marshall DJ, Anasti K, Yang G, Nie X, Tumba NL, Wiehe K, Wagh K, Korber B, Kepler TB, Munir Alam S, Morris L, Kamanga G, Cohen MS, Bonsignori M, Xia SM, Montefiori DC, Kelsoe G, Gao F, Mascola JR, Anthony Moody M, Saunders KO, Liao HX, Tomaras GD, Georgiou G, Haynes BF, Potent and broad HIV-neutralizing antibodies in memory B cells and plasma, Sci. Immunol (2017). 10.1126/sciimmunol.aal2200. [DOI] [PMC free article] [PubMed]
- [178].Krebs SJ, Kwon YD, Schramm CA, Law WH, Donofrio G, Zhou KH, Gift S, Dussupt V, Georgiev IS, Schätzle S, McDaniel JR, Lai YT, Sastry M, Zhang B, Jarosinski MC, Ransier A, Chenine AL, Asokan M, Bailer RT, Bose M, Cagigi A, Cale EM, Chuang GY, Darko S, Driscoll JI, Druz A, Gorman J, Laboune F, Louder MK, McKee K, Mendez L, Moody MA, O’Sullivan AM, Owen C, Peng D, Rawi R, Sanders-Buell E, Shen CH, Shiakolas AR, Stephens T, Tsybovsky Y, Tucker C, Verardi R, Wang K, Zhou J, Zhou T, Georgiou G, Alam SM, Haynes BF, Rolland M, Matyas GR, Polonis VR, McDermott AB, Douek DC, Shapiro L, Tovanabutra S, Michael NL, Mascola JR, Robb ML, Kwong PD, Doria-Rose NA, Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual, Immunity (2019). 10.1016/j.immuni.2019.02.008. [DOI] [PMC free article] [PubMed]
- [179].Pinto D, Fenwick C, Caillat C, Silacci C, Guseva S, Dehez F, Chipot C, Barbieri S, Minola A, Jarrossay D, Tomaras GD, Shen X, Riva A, Tarkowski M, Schwartz O, Bruel T, Dufloo J, Seaman MS, Montefiori DC, Lanzavecchia A, Corti D, Pantaleo G, Weissenhorn W, Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01, Cell Host Microbe (2019). 10.1016/j.chom.2019.09.016. [DOI] [PMC free article] [PubMed]
- [180].Zhang L, Irimia A, He L, Landais E, Rantalainen K, Leaman DP, Vollbrecht T, Stano A, Sands DI, Kim AS, Miiro G, Serwanga J, Pozniak A, McPhee D, Manigart O, Mwananyanda L, Karita E, Inwoley A, Jaoko W, DeHovitz J, Bekker LG, Pitisuttithum P, Paris R, Allen S, Poignard P, Burton DR, Murrell B, Ward AB, Zhu J, Wilson IA, Zwick MB, An MPER antibody neutralizes HIV-1 using germline features shared among donors, Nat. Commun (2019). 10.1038/s41467-019-12973-1. [DOI] [PMC free article] [PubMed]
- [181].Haynes BF, Kelsoe G, Harrison SC, Kepler TB, B-cell-lineage immunogen design in vaccine development with HIV-1 as a case study, Nat. Biotechnol (2012). 10.1038/nbt.2197. [DOI] [PMC free article] [PubMed]
- [182].Haynes BF, Verkoczy L, Host controls of HIV neutralizing antibodies, Science (80-. ) (2014). 10.1126/science.1254990. [DOI] [PMC free article] [PubMed]
- [183].Dennison SM, Stewart SM, Stempel KC, Liao H-X, Haynes BF, Alam SM, Stable Docking of Neutralizing Human Immunodeficiency Virus Type 1 gp41 Membrane-Proximal External Region Monoclonal Antibodies 2F5 and 4E10 Is Dependent on the Membrane Immersion Depth of Their Epitope Regions, J. Virol (2009). 10.1128/jvi.00571-09. [DOI] [PMC free article] [PubMed]
- [184].Dennison SM, Sutherland LL, Jaeger FH, Anasti KM, Parks R, Stewart S, Bowman C, Xia SM, Zhang R, Shen X, Scearce RM, Ofek G, Yang Y, Kwong PD, Santra S, Liao HX, Tomaras G, Letvin NL, Chen B, Alam SM, Haynes BF, Induction of antibodies in rhesus macaques that recognize a fusion-intermediate conformation of HIV-1 gp41, PLoS One (2011). 10.1371/journal.pone.0027824. [DOI] [PMC free article] [PubMed]
- [185].Zhang R, Verkoczy L, Wiehe K, Alam SM, Nicely NI, Santra S, Bradley T, Pemble CW, Zhang J, Gao F, Montefiori DC, Bouton-Verville H, Kelsoe G, Larimore K, Greenberg PD, Parks R, Foulger A, Peel JN, Luo K, Lu X, Trama AM, Vandergrift N, Tomaras GD, Kepler TB, Moody MA, Liao HX, Haynes BF, Initiation of immune tolerance-controlled HIV gp41 neutralizing B cell lineages, Sci. Transl. Med 8 (2016). 10.1126/scitranslmed.aaf0618. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [186].Sok D, Gils MJV, Pauthner M, Julien JP, Saye-Francisco KL, Hsueh J, Briney B, Lee JH, Le KM, Lee PS, Hua Y, Seaman MS, Moore JP, Ward AB, Wilson IA, Sanders RW, Burton DR, Recombinant HIV envelope trimer selects for quaternary-dependent antibodies targeting the trimer apex, Proc. Natl. Acad. Sci. U. S. A 111 (2014) 17624–17629. 10.1073/pnas.1415789111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [187].Lee JH, Andrabi R, Su CY, Yasmeen A, Julien JP, Kong L, Wu NC, McBride R, Sok D, Pauthner M, Cottrell CA, Nieusma T, Blattner C, Paulson JC, Klasse PJ, Wilson IA, Burton DR, Ward AB, A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic β-Hairpin Structure, Immunity (2017). 10.1016/j.immuni.2017.03.017. [DOI] [PMC free article] [PubMed]
- [188].Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB, Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design, Cell Rep (2018). 10.1016/j.celrep.2018.05.046. [DOI] [PMC free article] [PubMed]
- [189].Gorman J, Chuang GY, Lai YT, Shen CH, Boyington JC, Druz A, Geng H, Louder MK, McKee K, Rawi R, Verardi R, Yang Y, Zhang B, Doria-Rose NA, Lin B, Moore PL, Morris L, Shapiro L, Mascola JR, Kwong PD, Structure of Super-Potent Antibody CAP256-VRC26.25 in Complex with HIV-1 Envelope Reveals a Combined Mode of Trimer-Apex Recognition, Cell Rep (2020). 10.1016/j.celrep.2020.03.052. [DOI] [PubMed]
- [190].Andrabi R, Voss JE, Liang CH, Briney B, McCoy LE, Wu CY, Wong CH, Poignard P, Burton DR, Identification of Common Features in Prototype Broadly Neutralizing Antibodies to HIV Envelope V2 Apex to Facilitate Vaccine Design, Immunity (2015). 10.1016/j.immuni.2015.10.014. [DOI] [PMC free article] [PubMed]
- [191].Voss JE, Andrabi R, McCoy LE, de Val N, Fuller RP, Messmer T, Su CY, Sok D, Khan SN, Garces F, Pritchard LK, Wyatt RT, Ward AB, Crispin M, Wilson IA, Burton DR, Elicitation of Neutralizing Antibodies Targeting the V2 Apex of the HIV Envelope Trimer in a Wild-Type Animal Model, Cell Rep 21 (2017) 222–235. 10.1016/j.celrep.2017.09.024. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [192].Andrabi R, Pallesen J, Allen JD, Song G, Zhang J, de Val N, Gegg G, Porter K, Su CY, Pauthner M, Newman A, Bouton-Verville H, Garces F, Wilson IA, Crispin M, Hahn BH, Haynes BF, Verkoczy L, Ward AB, Burton DR, The Chimpanzee SIV Envelope Trimer: Structure and Deployment as an HIV Vaccine Template, Cell Rep (2019). 10.1016/j.celrep.2019.04.082. [DOI] [PMC free article] [PubMed]
- [193].Gorman J, Soto C, Yang MM, Davenport TM, Guttman M, Bailer RT, Chambers M, Chuang GY, Dekosky BJ, Doria-Rose NA, Druz A, Ernandes MJ, Georgiev IS, Jarosinski MC, Joyce MG, Lemmin TM, Leung S, Louder MK, McDaniel JR, Narpala S, Pancera M, Stuckey J, Wu X, Yang Y, Zhang B, Zhou T, Mullikin JC, Baxa U, Georgiou G, McDermott AB, Bonsignori M, Haynes BF, Moore PL, Morris L, Lee KK, Shapiro L, Mascola JR, Kwong PD, Structures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design, Nat. Struct. Mol. Biol (2016). 10.1038/nsmb.3144. [DOI] [PMC free article] [PubMed]
- [194].Barbian HJ, Decker JM, Bibollet-Ruche F, Galimidi RP, West AP, Learn GH, Parrish NF, Iyer SS, Li Y, Pace CS, Song R, Huang Y, Denny TN, Mouquet H, Martin L, Acharya P, Zhang B, Kwong PD, Mascola JR, Theo Verrips C, Strokappe NM, Rutten L, McCoy LE, Weiss RA, Brown CS, Jackson R, Silvestri G, Connors M, Burton DR, Shaw GM, Nussenzweig MC, Bjorkman PJ, Ho DD, Farzan M, Hahn BH, Neutralization properties of simian immunodeficiency viruses infecting chimpanzees and gorillas, MBio 6 (2015) 1–22. 10.1128/mBio.00296-15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [195].Doria-Rose NA, Schramm CA, Gorman J, Moore PL, Bhiman JN, DeKosky BJ, Ernandes MJ, Georgiev IS, Kim HJ, Pancera M, Staupe RP, Altae-Tran HR, Bailer RT, Crooks ET, Cupo A, Druz A, Garrett NJ, Hoi KH, Kong R, Louder MK, Longo NS, McKee K, Nonyane M, O’Dell S, Roark RS, Rudicell RS, Schmidt SD, Sheward DJ, Soto C, Wibmer CK, Yang Y, Zhang Z, Mullikin JC, Binley JM, Sanders RW, Wilson IA, Moore JP, Ward AB, Georgiou G, Williamson C, Karim SSA, Morris L, Kwong PD, Shapiro L, Mascola JR, Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies, Nature 508 (2014) 55–62. 10.1038/nature13036. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [196].Kong R, Xu K, Zhou T, Acharya P, Lemmin T, Liu K, Ozorowski G, Soto C, Taft JD, Bailer RT, Cale EM, Chen L, Choi CW, Chuang GY, Doria-Rose NA, Druz A, Georgiev IS, Gorman J, Huang J, Joyce MG, Louder MK, Ma X, McKee K, O’Dell S, Pancera M, Yang Y, Blanchard SC, Mothes W, Burton DR, Koff WC, Connors M, Ward AB, Kwong PD, Mascola JR, Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody, Science (80-. ) (2016). 10.1126/science.aae0474. [DOI] [PMC free article] [PubMed]
- [197].Van Gils MJ, Van Den Kerkhof TLGM, Ozorowski G, Cottrell CA, Sok D, Pauthner M, Pallesen J, De Val N, Yasmeen A, De Taeye SW, Schorcht A, Gumbs S, Johanna I, Saye-Francisco K, Liang CH, Landais E, Nie X, Pritchard LK, Crispin M, Kelsoe G, Wilson IA, Schuitemaker H, Klasse PJ, Moore JP, Burton DR, Ward AB, Sanders RW, An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability, Nat. Microbiol 2 (2016). 10.1038/nmicrobiol.2016.199. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [198].Xu K, Acharya P, Kong R, Cheng C, Chuang GY, Liu K, Louder MK, O’Dell S, Rawi R, Sastry M, Shen CH, Zhang B, Zhou T, Asokan M, Bailer RT, Chambers M, Chen X, Choi CW, Dandey VP, Doria-Rose NA, Druz A, Eng ET, Farney SK, Foulds KE, Geng H, Georgiev IS, Gorman J, Hill KR, Jafari AJ, Kwon YD, Lai YT, Lemmin T, McKee K, Ohr TY, Ou L, Peng D, Rowshan AP, Sheng Z, Todd JP, Tsybovsky Y, Viox EG, Wang Y, Wei H, Yang Y, Zhou AF, Chen R, Yang L, Scorpio Di.G., McDermott AB, Shapiro L, Carragher B, Potter CS, Mascola JR, Kwong PD, Epitope-based vaccine design yields fusion peptide-directed antibodies that neutralize diverse strains of HIV-1, Nat. Med 24 (2018) 857–867. 10.1038/s41591-018-0042-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [199].Kong R, Duan H, Sheng Z, Xu K, Acharya P, Chen X, Cheng C, Dingens AS, Gorman J, Sastry M, Shen CH, Zhang B, Zhou T, Chuang GY, Chao CW, Gu Y, Jafari AJ, Louder MK, O’Dell S, Rowshan AP, Viox EG, Wang Y, Choi CW, Corcoran MM, Corrigan AR, Dandey VP, Eng ET, Geng H, Foulds KE, Guo Y, Kwon YD, Lin B, Liu K, Mason RD, Nason MC, Ohr TY, Ou L, Rawi R, Sarfo EK, Schön A, Todd JP, Wang S, Wei H, Wu W, Mullikin JC, Bailer RT, Doria-Rose NA, Karlsson Hedestam GB, Scorpio DG, Overbaugh J, Bloom JD, Carragher B, Potter CS, Shapiro L, Kwong PD, Mascola JR, Antibody Lineages with Vaccine-Induced Antigen-Binding Hotspots Develop Broad HIV Neutralization, Cell 178 (2019) 567–584.e19. 10.1016/j.cell.2019.06.030. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [200].Cheng C, Xu K, Kong R, Chuang GY, Corrigan AR, Geng H, Hill KR, Jafari AJ, O’Dell S, Ou L, Rawi R, Rowshan AP, Sarfo EK, Sastry M, Saunders KO, Schmidt SD, Wang S, Wu W, Zhang B, Doria-Rose NA, Haynes BF, Scorpio DG, Shapiro L, Mascola JR, Kwong PD, Consistent elicitation of cross-clade HIV-neutralizing responses achieved in Guinea pigs after fusion peptide priming by repetitive envelope trimer boosting, PLoS One (2019). 10.1371/journal.pone.0215163. [DOI] [PMC free article] [PubMed]
- [201].Kwong PD, Fusion peptide epitope focused vaccines, in: HIVR4P Early Vaccine Clin. Stud. Nativ. Envel Trimers Germline-Targeting Immunogens, 2021. [Google Scholar]
- [202].Umotoy J, Bagaya BS, Joyce C, Schiffner T, Menis S, Saye-Francisco KL, Biddle T, Mohan S, Vollbrecht T, Kalyuzhniy O, Madzorera S, Kitchin D, Lambson B, Nonyane M, Kilembe W, Poignard P, Schief WR, Burton DR, Murrell B, Moore PL, Briney B, Sok D, Landais E, T.I.P.C. Investigators, T.I.A.H.I.V.R. Network, Rapid and Focused Maturation of a VRC01-Class HIV Broadly Neutralizing Antibody Lineage Involves Both Binding and Accommodation of the N276-Glycan, Immunity 51 (2019) 141–154.e6. 10.1016/j.immuni.2019.06.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [203].Landais E, Murrell B, Briney B, Murrell S, Rantalainen K, Berndsen ZT, Ramos A, Wickramasinghe L, Smith ML, Eren K, de Val N, Wu M, Cappelletti A, Umotoy J, Lie Y, Wrin T, Algate P, Chan-Hui PY, Karita E, Ward AB, Wilson IA, Burton DR, Smith D, Pond SLK, Poignard P, HIV Envelope Glycoform Heterogeneity and Localized Diversity Govern the Initiation and Maturation of a V2 Apex Broadly Neutralizing Antibody Lineage, Immunity. 47 (2017) 990–1003.e9. 10.1016/j.immuni.2017.11.002. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [204].Gao F, Bonsignori M, Liao HX, Kumar A, Xia SM, Lu X, Cai F, Hwang KK, Song H, Zhou T, Lynch RM, Alam SM, Moody MA, Ferrari G, Berrong M, Kelsoe G, Shaw GM, Hahn BH, Montefiori DC, Kamanga G, Cohen MS, Hraber P, Kwong PD, Korber BT, Mascola JR, Kepler TB, Haynes BF, Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies, Cell (2014). 10.1016/j.cell.2014.06.022. [DOI] [PMC free article] [PubMed]
- [205].Bonsignori M, Liao HX, Gao F, Williams WB, Alam SM, Montefiori DC, Haynes BF, Antibody-virus co-evolution in HIV infection: paths for HIV vaccine development, Immunol. Rev. (2017). 10.1111/imr.12509. [DOI] [PMC free article] [PubMed]
- [206].Williams WB, Zhang J, Jiang C, Nicely NI, Fera D, Luo K, Moody MA, Liao H-X, Alam SM, Kepler TB, Ramesh A, Wiehe K, Holland JA, Bradley T, Vandergrift N, Saunders KO, Parks R, Foulger A, Xia S-M, Bonsignori M, Montefiori DC, Louder M, Eaton A, Santra S, Scearce R, Sutherland L, Newman A, Bouton-Verville H, Bowman C, Bomze H, Gao F, Marshall DJ, Whitesides JF, Nie X, Kelsoe G, Reed SG, Fox CB, Clary K, Koutsoukos M, Franco D, Mascola JR, Harrison SC, Haynes BF, Verkoczy L, Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations, Nat. Commun (2017) 1–20. 10.1038/s41467-017-01336-3. [DOI] [PMC free article] [PubMed]
- [207].Saunders KO, Verkoczy LK, Jiang C, Zhang J, Parks R, Chen H, Housman M, Bouton-Verville H, Shen X, Trama AM, Scearce R, Sutherland L, Santra S, Newman A, Eaton A, Xu K, Georgiev IS, Joyce MG, Tomaras GD, Bonsignori M, Reed SG, Salazar A, Mascola JR, Moody MA, Cain DW, Centlivre M, Zurawski S, Zurawski G, Erickson HP, Kwong PD, Alam SM, Levy Y, Montefiori DC, Haynes BF, Vaccine Induction of Heterologous Tier 2 HIV-1 Neutralizing Antibodies in Animal Models, Cell Rep (2017). 10.1016/j.celrep.2017.12.028. [DOI] [PMC free article] [PubMed]
- [208].Saunders KO, Wiehe K, Tian M, Acharya P, Bradley T, Munir Alam S, Go EP, Scearce R, Sutherland L, Henderson R, Hsu AL, Borgnia MJ, Chen H, Lu X, Wu NR, Watts B, Jiang C, Easterhoff D, Cheng HL, McGovern K, Waddicor P, Chapdelaine-Williams A, Eaton A, Zhang J, Rountree W, Verkoczy L, Tomai M, Lewis MG, Desaire HR, Edwards RJ, Cain DW, Bonsignori M, Montefiori D, Alt FW, Haynes BF, Targeted selection of HIV-specific antibody mutations by engineering B cell maturation, Science (80-. ) 366 (2019). 10.1126/science.aay7199. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [209].Goo L, Chohan V, Nduati R, Overbaugh J, Early development of broadly neutralizing antibodies in HIV-1-infected infants, Nat. Med 20 (2014) 655–658. 10.1038/nm.3565. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [210].Muenchhoff M, Adland E, Karimanzira O, Crowther C, Pace M, Csala A, Leitman E, Moonsamy A, McGregor C, Hurst J, Groll A, Mori M, Sinmyee S, Thobakgale C, Tudor-Williams G, Prendergast AJ, Kloverpris H, Roider J, Leslie A, Shingadia D, Brits T, Daniels S, Frater J, Willberg CB, Walker BD, Ndung’u T, Jooste P, Moore PL, Morris L, Goulder P, Nonprogressing HIV-infected children share fundamental immunological features of nonpathogenic SIV infection, Sci. Transl. Med 8 (2016). 10.1126/scitranslmed.aag1048. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [211].Mishra N, Sharma S, Dobhal A, Kumar S, Chawla H, Singh R, Makhdoomi MA, Das BK, Lodha R, Kabra SK, Luthra K, Broadly neutralizing plasma antibodies effective against autologous circulating viruses in infants with multivariant HIV-1 infection, Nat. Commun 11 (2020). 10.1038/s41467-020-18225-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [212].Cirelli KM, Crotty S, Germinal center enhancement by extended antigen availability, Curr. Opin. Immunol (2017). 10.1016/j.coi.2017.06.008. [DOI] [PMC free article] [PubMed]
- [213].Tam HH, Melo MB, Kang M, Pelet JM, Ruda VM, Foley MH, Hu JK, Kumari S, Crampton J, Baldeon AD, Sanders RW, Moore JP, Crotty S, Langer R, Anderson DG, Chakraborty AK, Irvine DJ, Sustained antigen availability during germinal center initiation enhances antibody responses to vaccination., Proc. Natl. Acad. Sci. U. S. A 113 (2016) E6639–E6648. 10.1073/pnas.1606050113. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [214].Moyer TJ, Kato Y, Abraham W, Chang JYH, Kulp DW, Watson N, Turner HL, Menis S, Abbott RK, Bhiman JN, Melo MB, Simon HA, Herrera-De la Mata S, Liang S, Seumois G, Agarwal Y, Li N, Burton DR, Ward AB, Schief WR, Crotty S, Irvine DJ, Engineered immunogen binding to alum adjuvant enhances humoral immunity., Nat. Med 26 (2020) 430–440. http://www.nature.com/articles/s41591-020-0753-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [215].Moyo N, Vogel AB, Buus S, Erbar S, Wee EG, Sahin U, Hanke T, Efficient Induction of T Cells against Conserved HIV-1 Regions by Mosaic Vaccines Delivered as Self-Amplifying mRNA, Mol. Ther. - Methods Clin. Dev (2019). 10.1016/j.omtm.2018.10.010. [DOI] [PMC free article] [PubMed]
- [216].Bogers WM, Oostermeijer H, Mooij P, Koopman G, Verschoor EJ, Davis D, Ulmer JB, Brito LA, Cu Y, Banerjee K, Otten GR, Burke B, Dey A, Heeney JL, Shen X, Tomaras GD, Labranche C, Montefiori DC, Liao HX, Haynes B, Geall AJ, Barnett SW, Potent immune responses in rhesus macaques induced by nonviral delivery of a self-amplifying RNA vaccine expressing HIV type 1 envelope with a cationic nanoemulsion, J. Infect. Dis (2015). 10.1093/infdis/jiu522. [DOI] [PMC free article] [PubMed]
- [217].Zhang PLP, Prabhakaran M, Ding S, Tsybovsky Y, Narayanan E, Carfi A, Himansu S, Lin Y, Rogers D, Liu Q, Miao H, Chen X, Sarfo EK, Ambrozak DR, Gautam R, Martin MA, Weiss D, Misamore J, Mascola JR, Finzi A, McDermott A, Induction of cross-neutralizing antibodies and protection from heterologous tier-2 SHIV challenge by an mRNA-based vaccine in macaques, (n.d.) http://programme.aids2020.org/Abstract/Abstract/10515 (accessedJanuary 4, 2021).
- [218].Blakney AK, McKay PF, Yus BI, Aldon Y, Shattock RJ, Inside out: optimization of lipid nanoparticle formulations for exterior complexation and in vivo delivery of saRNA, Gene Ther (2019). 10.1038/s41434-019-0095-2. [DOI] [PMC free article] [PubMed]
- [219].Del Giudice G, Rappuoli R, Didierlaurent AM, Correlates of adjuvanticity: A review on adjuvants in licensed vaccines, Semin. Immunol (2018). 10.1016/j.smim.2018.05.001. [DOI] [PubMed]
- [220].Louder MK, Sambor A, Chertova E, Hunte T, Barrett S, Ojong F, Sanders-Buell E, Zolla-Pazner S, McCutchan FE, Roser JD, Gabuzda D, Lifson JD, Mascola JR, HIV-1 envelope pseudotyped viral vectors and infectious molecular clones expressing the same envelope glycoprotein have a similar neutralization phenotype, but culture in peripheral blood mononuclear cells is associated with decreased neutralization sensi, Virology 339 (2005) 226–238. 10.1016/j.virol.2005.06.003. [DOI] [PubMed] [Google Scholar]
- [221].Mann AM, Rusert P, Berlinger L, Kuster H, Günthard HF, Trkola A, HIV sensitivity to neutralization is determined by target and virus producer cell properties, Aids 23 (2009) 1659–1667. 10.1097/QAD.0b013e32832e9408. [DOI] [PubMed] [Google Scholar]
- [222].Provine NM, Cortez V, Chohan V, Overbaugh J, The neutralization sensitivity of viruses representing human immunodeficiency virus type 1 variants of diverse subtypes from early in infection is dependent on producer cell, as well as characteristics of the specific antibody and envelope variant, Virology 427 (2012) 25–33. 10.1016/j.virol.2012.02.001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [223].Lorenzi JCC, Mendoza P, Cohen YZ, Nogueira L, Lavine C, Sapiente J, Wiatr M, Mugo NR, Mujugira A, Delany S, Lingappa J, Celum C, Seaman MS, Caskey M, Nussenzweig MC, Neutralizing Activity of Broadly Neutralizing anti-HIV-1 Antibodies against Primary African Isolates, J. Virol (2020) JVI.01909–20. 10.1128/JVI.01909-20. [DOI] [PMC free article] [PubMed] [Google Scholar]