1Broad Institute of MIT and Harvard, Cambridge, MA USA 
2Kilimanjaro Christian Medical University College, Moshi, Tanzania 
3Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical Centre, Moshi, Tanzania 
4Department of Respiratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands 
5Department of Pediatrics, Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical Centre, Moshi, Tanzania 
6Department of Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands 
7Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands 
8Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA USA 
9Center for Computational and Integrative Biology and Department of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA USA 
 
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