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. 2021 Oct 5;16(10):e0257646. doi: 10.1371/journal.pone.0257646

Humoral response after SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times

Thomas Bachelet 1,*, Jean-Philippe Bourdenx 1, Charlie Martinez 1, Simon Mucha 1, Philippe Martin-Dupont 1, Valerie Perier 1, Antoine Pommereau 1
Editor: Etsuro Ito2
PMCID: PMC8491898  PMID: 34610031

Abstract

Dialysis patients are both the most likely to benefit from vaccine protection against SARS-CoV-2 and at the highest risk of not developing an immune response. Data from the medical field are thus mandatory. We report our experience with a BNT162b2-mRNA vaccine in a retrospective analysis of 241 dialysis patients including 193 who underwent anti-Spike-Protein-Receptor-Binding-Domain (RBD) IgG analysis. We show that a pro-active vaccine campaign is effective in convincing most patients to be vaccinated (95%) and frequently elicits a specific antibody response (94.3% after two doses and 98.4% after three doses). Only immunocompromised Status is associated with lack of seroconversion (OR 7.6 [1.5–38.2], p = 0.02). We also identify factors associated with low response (last quartile; IgG<500AU/mL): immunocompromised status, age, absence of RAAS inhibitors, low lymphocytes count, high C Reactive Protein; and with high response (high quartile; IgG>7000AU/mL): age; previous SARS-CoV-2 infection and active Cancer. From this experience, we propose a strategy integrating anti-spike IgG monitoring to guide revaccination and dialysis center management in pandemic times.

Introduction

Patients on maintenance dialysis are at risk of developing severe caused by SARS-CoV-2 [1]. There is an increased risk of hospitalization in this group, and a reported 10 to 20% of patients with SARS-CoV-2 infection have died in hemodialysis centers in France since the start of pandemic [2]. Thus, these high-risk patients were given priority in international vaccination campaigns [36]. Conversely, several decades of experience with the hepatitis B virus vaccine in this group have shown that these patients have an altered immune response and decreased vaccine response [7]. Dialysis patients are therefore both the most likely to benefit from vaccine protection and at the highest risk of not developing an immune response.

Several vaccines have been approved for SARS-CoV-2 infection, in particular, new generation lipid nanoparticle delivery of antigen encoding mRNA vaccines BNT162b2 (Pfizer-BioNTech®) [8] and mRNA-1273 (Moderna®) [9]. These vaccines have been shown to have a high level of protection which has been confirmed in a nationwide mass vaccination setting [10]. They also elicit an antibody response [11, 12] that seems to persist over the time [13]. One aspect of the immune response can be easily characterized and quantified in routine practice using the recent test on seroconversion of IgG antibodies against the receptor binding domain protein of the S1 subunit of the spike protein of SARS-CoV-2 (Spike-Protein-RBD IgG). The humoral response against SARS-CoV-2 in dialysis patients is the subject of intense research [14]. Seminal studies have confirmed the efficacy of the new mRNA vaccines in dialysis patients for seroconversion of the Spike-Protein-RBD IgG [15, 16]. On the other hand, there is concern about transplanted patients receiving maintenance immunosuppression [17, 18].

We report our experience with vaccines BNT162b2 (Pfizer-BioNTech) in a retrospective observational single center study of dialysis patients and proposed to integrate anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring in the management of dialysis centers facing the SARS-CoV2 pandemic.

Material and methods

Study design

Retrospective single center observational cohort study according to modified STROBE statements.

Setting and participants

As of January 2021, dialysis patients were given access to a local vaccination campaign according to French recommendations (https://www.has-sante.fr/jcms/p_3234097/fr/modification-du-schema-vaccinal-contre-le-sars-cov-2-dans-le-nouveau-contexte-epidemique). Dialysis patients were recruited to receive a two injection-scheme of the BNT162b2 mRNA vaccine. Resident patients in nursing homes were vaccinated in their institute. Previous SARS-CoV-2 -infected patients received only one injection. Home dialysis patients returned to the center to be vaccinated. Individual information on the balance benefit risk of the vaccine was provided to each patient by the medical staff.

Variables: Detection and characterization of SARS-CoV-2 antibodies

Patients were tested by the SARS-CoV-2 IgG Architect system (targeting the nucleocapsid antigen) on the day of the first injection (Abbott©). Patients were tested with SARS-CoV-2 IgG serologic assays targeting Spike-Protein-RBD one month after the second dose of vaccine. The IgG II Quant (Abbott©) assay was used for the quantitative measurement of the anti-Spike-Protein-RBD IgG antibodies of SARS-CoV-2. A test was considered to be positive if the IgG was > 50 AU/ml.

Data sources

Blood samples were collected during routine dialysis visits in our medical center CTMR (Centre de Traitement des Maladies Rénales, Clinique Saint-Augustin), ELSAN group. Baseline comorbidities, clinical and biological data (hemoglobin, lymphocyte count, C Reactive Protein and albuminemia) were obtained from our electronic medical database (SINED- Groupe Theradial, Medical Computer Systems). Immunocompromised status was characterized by one of the following factors: former or current organ transplant still requiring immunosuppressive therapy, HIV infection, recent (within 6 months) immunosuppressive therapy, or chemotherapy. All patients were informed using the approved written informed consent form. Their non-opposition to data collection for research purposes was traced in the medical file. Data collection was declared to the French Commission Nationale de l’Informatique et des Libertés, registration 2222259. This protocol was submitted to the approbation of Elsan Group Institutional Review Board.

Outcomes

The two main outcomes of the study were the global vaccination rate and the rate of seroconversion to SARS-CoV-2 anti-Spike-Protein-RBD antibodies. The secondary outcomes included the factors associated with seroconversion to SARS-CoV-2 anti-Spike-Protein-RBD antibodies and the low and high quartitles of quantitative IgG response.

Statistical analysis

The McNemar, Chi-square or Fisher test was used for categorical variables, and Student t test for quantitative variables. Risk factors associated with SARS-CoV-2 anti-Spike-Protein-RBD with p<0.1 on univariate analysis were included in multivariate analysis. Covariates independently associated with the outcome were selected by iterative backward elimination and only those having p < .05 were retained. All analyses were performed with JMP.10 (2012, SAS Institute Inc, Cary, NC, USA).

Results

Baseline characteristics

A total of 241 patients were included (mean age 73.8±12.6 years old). The SARS-CoV-2 IgG antinucleocapsid test was performed in 221 patients. Nineteen patients (7.9%) had been infected with SARS-CoV-2 the year before. Twelve out of the available 15 tested patients previously infected with SARS CoV2 were still seropositive (80%). On the opposite, two patients were found to be seropositive for the SARS-CoV-2 -IgG antinucleocapsid but had no symptoms of COVID-19. These last two patients only received one dose of vaccine and showed low titers of SARS-CoV-2 anti-Spike-Protein-RBD antibodies, that were below the positivity threshold. These patients were thus reclassified as false positives and programmed for a second dose. They were not included in the final analysis. Five other patients developed an infection in the days following vaccination. Their second injection was postponed, and they were also not included in the seroconversion analysis. Transplanted or deceased patients during the period between the two vaccine injections were also excluded from the seroconversion analysis as well as home dialysis patients, the two patients contraindicated for a suspicion of infection the day of vaccination which required antibiotherapy or any patients that did not receive the two injections (Fig 1, Flowchart).

Fig 1. Flowchart of patient receiving BNT162b2-mRNA vaccines and analysed for IgG anti-SARS-CoV-2 Spike-Protein-RBD.

Fig 1

Vaccination rate

The acceptance was high with a SARS-CoV-2 vaccination initiated in 95% of the patient from our cohort (227/241), attesting that patients were aware of the risk of severe SARS-CoV-2 infection and had been convinced by the information communicated to them personally. This vaccination rate was higher than for our 2020 anti-influenza vaccine campaign (78%).

Seroconversion study

Overall, 193 dialysis patients were included in the SARS-CoV-2 anti-Spike-Protein-RBD seroconversion study. Patient characteristics and comorbidities are described in Table 1. At a median of 32.7±0.5 days after the second dose of vaccine, 182 (94.3%) of the group were seropositive for SARS-CoV-2 anti-Spike IgG. The mean anti- Spike-Protein-RBD titer was 5764 AU/ml, the median was 2085 AU/ml. We established the lowest and highest quartitles of IgG anti-Spike-Protein-RBD with a titer of IgG <500AU/mL for the lowest (low responder) and >7000AU/mL for the highest (high responder), respectively.

Table 1. Baseline characteristics according to IgG anti SARS-CoV2 response*.

ALL PATIENTS N = 193 SEROPOSITIVE SERONEGATIVE
IgG+ anti-SARS-CoV2 IgG- anti-SARS-CoV2
N = 182 N = 11 p
Sex (N, Woman/Man) 70/123 67/119 3/8 0.39
Age (years, mean±sd) 73.7±12.7 73.5±12.7 76.9±12.5 0.40
Time after last vaccination injection (days, mean±sd) 32.7±6.6 32.8±6.7 30.5±4.9 0.25
Body Mass Index (Kg/m2, mean±sd) 25.8±4.7 25.8±4.7 25.3±4.2 0.74
Primary Kidney Disease (N, %) 0.15
Vascular Nephropathy 44 (23%) 38 (21%) 6 (55%)  
Uropathy/renal reduction 14 (7%) 14 (8%) 0  
Polycystic Renal Disease 10 (5%) 10 (6%) 0  
Chronic Tubulo-Interstitial Nephropathy 31 (16%) 29 (16%) 2 (18%)  
Glomerular Disease 21 (11%) 21 (11%) 0  
Diabetic Nephropathy 50 (26%) 48 (26%) 2 (18%)  
Undeterminated Nephropathy 23 (12%) 22 (12%) 1 (9%)  
Diabetes Mellitus (N,%) 75 (39%) 71 (39%) 4 (36%) 0.86
Hypertension (N,%) 161 (83%) 151 (83%) 10 (91%) 0.46
Cardiac Associated Disease (N,%) 53 (27%) 49 (27%) 4 (36%) 0.51
Peripheral Arterial Disease (N, %) 47 (24%) 42 (23%) 5 (45%) 0.12
Chronic Heart Failure (N, %) 31 (16%) 29 (16%) 2 (18%) 0.81
Chronic Obstructive Pulmonary Disease/Asthma (N,%) 27 (14%) 26 (14%) 1 (9%) 0.68
Cirrhosis (N, %) 6 (3%) 5 (3%) 1 (9%) 0.34
Active Cancer (N, %) 19 (10%) 16 (9%) 3 (27%) 0.09
Autoimmune Disease (N, %) 10 (5%) 8 (4%) 2 (18%) 0.10
Immunocompromised Status (N, %) 16 (8%) 11 (6%) 5 (45%) 0.001
History of Kidney Transplantation (N, %) 20 (10%) 17 (9%) 3 (27%) 0.08
Other Organ Transplantation (N, %) 4 (2%) 2 (1%) 2 (18%) 0.01
Inhibitor of RAAS Therapy 74 (38%) 73 (40%) 1 (9%) 0.03
Hemoglobin (g/dl, mean±sd) 11.4±1.1 11.4±1.2 11.3±0.7 0.86
Lymphocytes (giga/mm3, mean±sd) 1.10±0.44 1.11±0.44 0.86±0.37 0.05
Serum albumin (g/l, mean±sd) 36.7±3.8 36.8±3.7 34.7±4.5 0.03
C Reactive Protein (mg/l, mean±sd) 12.8±21 12±21 22.5±26 0.12
Previous SARS CoV2 infection (>3 months) 19 (10%) 19 (13%) 0 0.001

* SARS-CoV-2 IgG serologic assays targeting Spike Protein Receptor Binding Domain-RBP (ABBOTT®) with a IgG positive threshold at 50 AU/mL.

Seronegative patients were more often immunocompromised (45% vs 6%, p = 0.001), had more frequently other functional organ transplants (18% vs 1%, p = 0.01), were less frequently receiving Angiotensin-Aldosteron System (RAAS) inhibitors (9% vs 40%, p = 0.03) had lower lymphocyte count (0.86±0.14 vs 1.11±0.03, p = 0.05) and lower serum albumin (34.7±1.1 vs 36.8±0.3, p = 0.03).

Risk factors for low and high responders to vaccination

The only factor associated with the absence of seroconversion (IgG titer <50 AU/mL) on multivariate analysis was immunocompromised status (Table 2A, OR 7.6 [1.5–38.2], p = 0.02). Univariate then multivariate analysis identified age (OR = 1.06 per year [1.02–1.1], p = 0.006), immunocompromised status (OR 5.55 [1.14–30.5], p = 0.034), absence of iRAAS therapy (OR for iRAAS treatment = 0.27 [0.07–0.6], p = 0.002) and C-Reactive-Protein (OR = 1.04 per mg/L, [1.02–1.06], p<0.001) as risk factors of being a low responder (lowest quartitle of IgG anti-Spike-Protein-RBD titer <500AU/mL, Table 2B). On the other hand, previous SARS-CoV-2 infection (15.1 [4.79–58.8], p<0.001), lower age (OR = 0.95 per year [0.93–0.99], p = 0.007) and the absence of an active cancer (OR non quantifiable, p = 0.009) were associated with being a high responder (highest quartitle of IgG anti-Spike-Protein-RBD titer >7000AU/mL, Table 2C).

Table 2. A. Risk factors associated with the absence of seroconversion Spike-Protein-RBD IgG anti-SARS-CoV-2.

B. Risk factors associated with a low Spike-Protein-RBD IgG anti-SARS-CoV-2 (IgG <500AU/mL, first quartile vs other three quartiles). C. Risk factors associated with a high Spike-Protein-RBD IgG anti-SARS-CoV-2 (IgG >7000AU/mL, Last quartile vs other three quartiles).

Variables No patients No events Univariate analysis Multivariate analysis
OR CI p OR CI p
A.
Active Cancer
Yes 19 3 3.6 [0.75–14] 0.11
No 174 8    
Immunocompromised status
Yes 16 5 12.9 [2.1–34.5] 0.0005 7.6 [1.5–38.2] 0.02
No 177 6
iRAAS Therapy
Yes 74 1 0.14 [0.01–0.79] 0.02
No 119 10
Lymphocytes (per Giga/mm3) 193 11 0.17 [0.02–1.01] 0.054
Serum albumin (per g/L) 193 11 0.87 [0.75–1.02] 0.054
B.
Age (per years) 193 47 1.05 [1.02–1.09] 0.001 1.06 [1.02–1.1] 0.006
Active Cancer
Yes 19 9 3.2 [1.2–8.6] 0.02      
No 174 10            
Immunocompromised status
Yes 16 8 3.5 [1.2–10.2] 0.02 5.55 [1.14–30.5] 0.034
No 177 8
iRAAS Therapy
Yes 74 8 0.25 [0.1–0.54] 0.003 0.27 [0.09–0.72] 0.007
No 119 39            
Lymphocytes (per Giga/mm3) 193 47 0.15 [0.05–0.41] <0.001 0.22 [0.07–0.6] 0.002
Serum albumin (per g/L) 193 47 0.89 [0.81–0.97] 0.006      
CRP (per mg/L) 193 47 1.04 [1.02–1.06] <0.001 1.04 [1.02–1.06] <0.001
C.
Age (per years) 193 47 0.95 [0.93–0.98] 0.001 0.95 [0.93–0.99] 0.007
Chronic Heart Failure
Yes 31 3 0.28 [0.06–0.86] 0.02
No 162 28
Active Cancer
Yes 19 0 not quantifiable 0.0008 not quantifiable 0.009
No 174 19
iRAAS Therapy
Yes 74 24 2.0 [1.03–3.92] 0.04
No 119 50      
Serum albumin (per g/L) 193 47 1.11 [1.01–1.22] 0.03
CRP (per mg/L) 193 47 0.98 [0.96–1.01] 0.09
Previous SARS-CoV-2 infection
Yes 19 15 16.2 [5.37–60.4] <0.001 15.1 [4.79–58.8] <0.001
No 174 4            

Definitions: Active cancer (diagnostic of neoplasia without enough delay to permit a theoretical inscription for a transplantation access); CRP (C Reactive Protein) Immunocompromised status (immunosuppressive treatment of haematological disease interfering with immune system); iRAAS (inhibitor of renin angiotensin aldosterone system); RBP (Receptor Binding Protein).

Age, Body Mass Index, Overweight, Sex, Renal initial nephropathy, Diabetes melitus, Hypertension, Cardiac Associated Disease, Peripheral Arterial Disease, Chronic Heart Failure, Chronic Obstructive Pullmonary Disease or Asthma, Cirrhosis, Active Cancer, Autoimmune Disease, Immunocompromised status, Previous Kidney Transplantation, iRAAS, Hemoglobin, Lymphocytes, Serum albumin and C Reactive Protein were tested in logistic regression for each item and reported only if they were significant in univariate analysis with a p>0.2. Covariates with a p <0.2 in univariate analysis were included in a multivariate model, then eliminated iteratively until only those whose association with the event of interest was significant (p <0.05 was retained).

Outcome

No major adverse events were reported. No additional COVID-19 infections have occurred since February 2021. Meanwhile, revaccination with a third dose of BNT162b2 mRNA vaccine, has been recommended for End-Stage-Renal-Disease patients in France. However, we don’t forget that SARS-CoV-2 vaccines should be considered as a rare and precious therapy and consequently should be rationalized [19]. That’s why we proposed to first give this third dose to our non-responder patients to a two dose-scheme of the BNT162b2 mRNA vaccine. On the 11 patients who don’t seroconvert, one died during the follow-up of a cardiac cause. On the 10 remaining patients, 7 developed a humoral response with Spike-Protein-RBD IgG anti-SARS-CoV-2 reaching the positivity threshold of the kit (50AU/mL), although among the 7, only 3 had IgG titers above 500 AU/mL (Fig 1). Taken together, we found an excellent global seroconversion rate of 98.4% in our cohort after a rationalized strategy for the allocation of the third dose.

Perspectives

The sole analysis of humoral response may underestimate or overestimate the immunogenicity of the vaccine. Noteworthy, it missed the evaluation of cell-mediated immunity which requires a dedicated specific platform which goes beyond the standard of care [20, 21]. However, the well-known correlation between these two systems may support the hypothesis that high IgG titers could reflect a robust coordinated immune response. We made this hypothesis to design an algorithm integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers and allocation of the third vaccine dose (Fig 2). The cut off of 500 AU/mL was determined as the IgG titers of the low responder quartitle. Incidentally it represents a ratio of ten (x10) for the positivity threshold of the kit. Other population studies should be made to confirm this distribution in other cohorts. We here propose to use this cutoff to rationalize the timing of the distribution of the third vaccine. This third dose is delayed until the IgG titers drop below 500AU/mL with monitoring every 3–6 months during pandemic times. This strategy should prolong the protection conferred by vaccination beyond the supposed 8–9 months after the end of complete SARS-CoV-2 vaccination program, without endangering dialysis patients during epidemic waves. The prospective follow-up of our cohort might demonstrate the safety and efficacy of the proposed algorithm.

Fig 2. Proposed algorithm integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers.

Fig 2

Discussion

The risk of SARS-CoV-2 infection in dialysis patients has been a major concern due to their increased risk of severe illness as well as their need for repeated visits to healthcare facilities. This study shows that a pro-active vaccine campaign can successfully reach the majority of these patients (95%).

We also confirmed that the BNT162b2 mRNA vaccine effectively elicits a specific antibody response against the main antigenic target of the virus (spike protein) in the same proportion as that in seminal reports on the protection from infection in real-life studies. In addition, we demonstrated that the adjunction of a third dose makes possible to attain more than 98% of seroconversion. These results confirmed the immunogenicity of these new generation mRNA vaccines in dialysis patients. There is thus a discrepancy with the results reported in kidney transplantation recipients which hardly succeed to seroconvert in 70% of the patients after three doses [22]. Our study effectively confirmed the immunocompromised status as the main factor predisposing patients to an absence of seroconversion and/or a low IgG anti SARS-CoV-2 Spike-Protein-RBD response. Other classical conditions interfering with the ability to develop a new immune response were also found to be associated with a low response (age, nutritional state, chronic inflammation, lymphocyte count).

We confirmed that a previous SARS-CoV-2 infection had a booster effect on the intensity of antibody response (in high responder). This suggests that an initial encounter with the complete virus helps trigger a secondary broad immune response to the antigen which makes a link between the IgG levels and the not-analyzed cellular response.

Finally, our results also suggest that RAAS inhibitor therapy may be a new factor associated with a better antibody response to SARS-CoV-2. There is probably an indication bias because RAAS inhibitors may have been given to the healthiest patients. However, RAAS inhibitors also increase ACE2 expression [23]. ACE2 is an enzyme that physiogically counters RAAS activation and is found on the cells of numerous tissues. It is also a receptor for SARS-CoV-2 by binding with its spike protein, thus allowing its entry into host cells [24]. Therefore, the possibility that this overexposed target could trigger an amplified loop in the immune response cannot be excluded and is mentioned here for the first time.

This study has several limitations. Firstly, the specific, retrospective, single center design of the study could result in insufficient collected data to enable unsupervised analysis susceptible to identify unexpected patterns of association. Secondly, the immunological approach using an antibody response alone to evaluate the immune vaccine response may be too simplistic in comparison to systems-biology approaches and evaluation of cell-mediated immunity [20, 21, 2527]. Thirdly, the timing of the decline in the IgG, the IgG titer which correlates with protection in front of a real-life clinical challenge like the extent of clinical protection created by the antibody response remain uncertain, especially in the presence of emerging variants with mutations on SARS-CoV-2 spike protein.

Taken together, these results confirmed the acceptability, the efficacy, and the safety of the mRNA vaccine BNT162b2 in dialysis patients. They suggest that extensive vaccination campaigns as well as collecting data on the factors associated with the intensity of the humoral response should be continued in vulnerable patients. Based on this experience, we believe that anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring should help to manage dialysis centers.

Supporting information

S1 Data

(XLSX)

Acknowledgments

ELSAN group research initiative.

Abbreviations

SARS-CoV-2

Severe Acute Respiratory Syndrome Coronavirus 2

COVID-19

Coronavirus disease 2019

iRAAS

inhibitors of Renin Angiotensin Aldosteron System

RBD

Receptor Binding Domain

Data Availability

All relevant data are within the manuscript and its Supporting Information files.

Funding Statement

The author(s) received no specific funding for this work.

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Decision Letter 0

Etsuro Ito

13 Jul 2021

PONE-D-21-16866

Humoral response after anti-SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times.

PLOS ONE

Dear Dr. BACHELET,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please provide the details about the methods as the reviewers commented.

Please submit your revised manuscript by Aug 27 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

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We look forward to receiving your revised manuscript.

Kind regards,

Etsuro Ito

Academic Editor

PLOS ONE

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Reviewers' comments:

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Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The Authors in "Humoral response after anti-SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times", describe very well the different factors influencing the response to BNT162b2-mRNA vaccine in dialysis patients. I think this paper is suitable to be accepted but with minor revisions:

1. As age seems to be associated to both low and high response to the vaccine, I suggest to add a figure to this paper in which the author could show the correlation Antibody concentration/Age.

2. Page 7, line 148-150: it seems that something has been skipped in this sentence. I recommend that you construct a meaningful sentence.

3. Authors shown several limitation in their study. Accordingly, as the sole analysis of humoral response may underestimate the immunogenicity of the vaccine, it is critical the evaluation of cell-mediated immunity to estimate the response to the vaccine. On this purpose, I suggest to add in your references, two recent papers about this topic: PMID: 34058052, PMID: 34036720

Reviewer #2: Major comments:

1) Why and how was a cut off of 500 AU/ml set to make a decision about additional vaccination? This value seems to me to be quite arbitrary, as absolute values and cut offs differ between commercially available assays. Furthermore, it is still not clear which specific antibody value correlates with protection against (severe) infections. The algorithm and the limitations of this algorithm should be discussed in more detail in the discussion section.

2) On P7 L148-150 something went wrong. Data seems to be missing and the sentence is not completed.

3) I am not convinced that active cancer is really responsible for higher antibody levels after vaccination. Are there any data about BNT162b2 or other vaccines and active cancer? This should be discussed.

4) The authors should also discuss why (based one which data) they stop vaccinating after the second booster dose. E.g. in hepatitis B, a 4th or 5th dose seems to be promising in some patients.

Minor comments:

5) "Patients on maintenance dialysis are at risk of developing severe disease from Coronavirus 2019 (COVID-19), in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)." This sentence of the introduction is not correct. The last part should be "caused by SARS-CoV-2" or something like that.

6) Please use the term "pandemic" instead of "pandemy" throughout the manuscript (e.g. P4 L75).

7) Please delete the following sentence: "Statistical analysis was performed using conventional methods."

8) Please write SARS-CoV-2 and COVID-19 consistently instead of "SARS COV2" or "SARS CoV-2" or "COVID19".

9) On P6 L131 "seroconversion" is written incorrectly.

10) Please write "SARS-CoV-2 vaccination" and not "anti-SARS-CoV-2 vaccination" throughout the manuscript.

11) Ad Table 1. What does "Figru" under the section "Time after last vaccination injection"?

12) "In" is misspelled on P10 L188.

13) What were the 2 contraindications for vaccination?

14) Regarding the algorithm: Under the 3rd dose "IgG > or < 50" is stated. Did you mean 500 as after the second vaccination? What does "Adapted to circulating viral variants" exactly mean?

Reviewer #3: This review is on the statistical aspects of the paper.

The statistical analysis part is well-written. I only have 2 minor comments.

1. page 5, line 114, why the p-value threshold is set at 0.15?

2. Table 1. the p-value should use the same number of significant digits.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

PLoS One. 2021 Oct 5;16(10):e0257646. doi: 10.1371/journal.pone.0257646.r002

Author response to Decision Letter 0


27 Aug 2021

Humoral response after anti-SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times.

PLOS ONE

Dear Dr. BACHELET,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

Please provide the details about the methods as the reviewers commented.

Please submit your revised manuscript by Aug 27 2021 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

• A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.

• A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.

• An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: http://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Etsuro Ito

Academic Editor

PLOS ONE

RESPONSE TO REVIEWER

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

________________________________________

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

________________________________________

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

________________________________________

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

________________________________________

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The Authors in "Humoral response after anti-SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times", describe very well the different factors influencing the response to BNT162b2-mRNA vaccine in dialysis patients. I think this paper is suitable to be accepted but with minor revisions:

1. As age seems to be associated to both low and high response to the vaccine, I suggest to add a figure to this paper in which the author could show the correlation Antibody concentration/Age.

RESPONSE 1 : Age is one of the strongest predictive factor associated with variability in the response to vaccination (see for example Gustafson, C. E et al.(2020). Influence of immune aging on vaccine responses. J Allergy Clin Immunol, 145(5), 1309-1321). We found indeed the previously-described correlation between age and response to vaccination in our work. However, additional factors (like immunosuppression or previous SARS-CoV-2 infection) make the linearity of the correlation less convincing (even if we choose a logarithmic presentation of the data). We are not sure that adding this figure would be fully relevant.

Figure : Anti-SARS-CoV-2 Spike-Protein-RBD IgG titers (AU/mL, Abbott©) according to the age ot the dialysis patients

2. Page 7, line 148-150: it seems that something has been skipped in this sentence. I recommend that you construct a meaningful sentence.

RESPONSE 2 : We corrected the sentence as followed : « Seronegative patients were more often immunocompromised (45% vs 6%, p=0.001), had more frequently other functional organ transplants (18% vs 1%, p=0.01), were less frequently receiving Angiotensin-Aldosteron System (RAAS) inhibitors (9% vs 40%, p=0.03) had lower lymphocyte count (0.86±0.14 vs 1.11±0.03, p=0.05) and lower serum albumin (34.7±1.1 vs 36.8±0.3, p=0.03). »

3. Authors shown several limitation in their study. Accordingly, as the sole analysis of humoral response may underestimate the immunogenicity of the vaccine, it is critical the evaluation of cell-mediated immunity to estimate the response to the vaccine. On this purpose, I suggest to add in your references, two recent papers about this topic: PMID: 34058052, PMID: 34036720

RESPONSE 3 : We are plenty aware of this main limitation. We add consequently this remark in the manuscript. We also integrate the recent published data related to this kind of analysis in our references PMID: 34058052, PMID: 34036720, PMID: 34112706, PMID: 34284044. Humoral response may underestimate and/or overestimate the immunogenicity of vaccine. However, analysis of the humoral response is possible in clinical pratice whereas evaluation of cell-mediated immunity requires a dedicated specific platform which goes beyond the standard of care. Trying to identify accessible tools directly transposable in clinical practive is relevant. According to recently published ROMANOV study (Espi, M. et al, (2021). The ROMANOV study found impaired humoral and cellular immune responses to SARSCov-2 mRNA vaccine in virus unexposed patients receiving maintenance hemodialysis. Kidney Int), humoral response does not guarantee a concomittant cellular response and this discrepancy might be more pronounced in dialysis patients (25% of tested dialysis patients with a humoral response without traces of cellular response). This point also evokes the lack of knowledge about a specific anti-SARS-CoV-2 Spike-Protein-RBD IgG titer which correlates with protection in front of a real-life clinical challenge. These studies are probably in progress. Meanwhile, collecting data on the factors associated with the intensity of the humoral response in particularly vulnerable patients as dialysis patients is mandatory. Finally we should mention that in previously infected patients, there is this “boost-effect” on the intensity of the humoral response (in high responder). This might suggest that there is a link between the IgG levels and the not-analyzed cellular response.

Reviewer #2: Major comments:

1) Why and how was a cut off of 500 AU/ml set to make a decision about additional vaccination? This value seems to me to be quite arbitrary, as absolute values and cut offs differ between commercially available assays. Furthermore, it is still not clear which specific antibody value correlates with protection against (severe) infections. The algorithm and the limitations of this algorithm should be discussed in more detail in the discussion section.

RESPONSE 4 : As discussed aboved in RESPONSE 3, the immunological approach using an antibody response alone to evaluate the immune vaccine response may be too simplistic in comparison to systems-biology approaches. Noteworthy, it missed the evaluation of cellular immune response. However, the well-known correlation between these two systems may support the hypothesis that high IgG titers could reflect a robust coordinated immune response.We made this hypothesis. The cut off of 500 AU/mL was then determined as the IgG titers of the low responder quartitle. Incidentally it represents a ratio of ten (x10) for the positivity threshold of the kit.

Other population studies should be made to confirm this distribution in other cohorts. Thereby, we have a cutoff to rationalize the access and the distribution to the third vaccine dose which is currently recommanded for all dialysis patients in France. We believe that if a clear seroconversion could be registered (id est with IgG > 500AU/mL), the third dose may be postponed. We thus could prolong the protection conferred by vaccination beyond the reported 8-9 months after the end of complete SARS-CoV-2 vaccination, without endangering our dialysis patients during epidemic waves. Consequently, rare vaccination doses could be better used. The other objective of the algorithm is to support organization and patients circulation in dialysis centers, by identifying the high risk patients who may not have developped enough immune response to be protected and who require maintained vigilance (for example no access to collation during dialysis session, no possibility of dialysis in other centers during epidemic waves, no possibility of intervention without SARS-CoV2 RT-PCR test, reinforced contact precautions, vaccination of relatives). The prospective follow-up of our cohort might demonstrate the safety and efficacy of the proposed algorithm.

2) On P7 L148-150 something went wrong. Data seems to be missing and the sentence is not completed.

See RESPONSE 2.

3) I am not convinced that active cancer is really responsible for higher antibody levels after vaccination. Are there any data about BNT162b2 or other vaccines and active cancer? This should be discussed.

RESPONSE 5 : Actually, it was the opposite. An active cancer was defined as a diagnostic of neoplasia without enough delay to permit a theoretical inscription for a transplantation access as mentioned in the legend of table 2). An active cancer has already been associated with a defect in immune response (either due to inflammatory syndrome, hyper catabolic state or effects of oncologic treatment). This information may thus be redundant with the immunocompromised status although only the absence of an active cancer was clearly associated with the high Spike-Protein-RBD IgG anti-SARS-CoV-2 responder group. More precisely there were none active cancers in any of the high responder patients. We add précisions in the text on this point.

4) The authors should also discuss why (based one which data) they stop vaccinating after the second booster dose. E.g. in hepatitis B, a 4th or 5th dose seems to be promising in some patients.

RESPONSE 6 : We thank reviewer 2 for his comment. The hepatitis B virus vaccine nephrologic experience during the last decades indeed brings some tools to organize vaccine allocation. That’s why a third dose was rapidly recommanded in kidney transplant recipients as in dialysis patients in France. However we don’t forget that SARS-CoV-2 vaccines should be considered as a rare and precious therapy. That’s why we proposed to first give this third dose to our non responder patients. On the 11 patients who don’t seroconvert, one died during the follow-up. On the 10 remaining patients, 7 developed a humoral response with Spike-Protein-RBD IgG anti-SARS-CoV-2 reaching the positivity threshold of the kit, although among the 7, only 3 had IgG titers above 500 AU/mL. We modified Figure 1 according to these results. Interestingly, we found an excellent global seroconversion rate of 98.4% in our cohort after a rationalized strategy for the allocation of the third dose.

Minor comments:

5) "Patients on maintenance dialysis are at risk of developing severe disease from Coronavirus 2019 (COVID-19), in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)." This sentence of the introduction is not correct. The last part should be "caused by SARS-CoV-2" or something like that.

RESPONSE 7 : We modified the text as followed : « Patients on maintenance dialysis are at risk of developing severe caused by SARS-CoV-2. »

6) Please use the term "pandemic" instead of "pandemy" throughout the manuscript (e.g. P4 L75).

We corrected the text as suggested.

7) Please delete the following sentence: "Statistical analysis was performed using conventional methods."

We corrected the text as suggested.

8) Please write SARS-CoV-2 and COVID-19 consistently instead of "SARS COV2" or "SARS CoV-2" or "COVID19".

We made the various modifications in the text as suggested.

9) On P6 L131 "seroconversion" is written incorrectly.

We corrected the word.

10) Please write "SARS-CoV-2 vaccination" and not "anti-SARS-CoV-2 vaccination" throughout the manuscript.

We made the various modifications in the text as suggested.

11) Ad Table 1. What does "Figru" under the section "Time after last vaccination injection"?

We corrected Table 1 with the proper result.

12) "In" is misspelled on P10 L188.

We corrected the word.

13) What were the 2 contraindications for vaccination?

RESPONSE 8 : Two patients with an active infection with suspicion of bacterial infection and initiation of antibiotherapy were contraindicated for vaccination.

14) Regarding the algorithm: Under the 3rd dose "IgG > or < 50" is stated. Did you mean 500 as after the second vaccination? What does "Adapted to circulating viral variants" exactly mean?

RESPONSE 9 : In the algorithm we suggest

- Serologic tests should be performed only for the dialysis patients at risk for low response if ressources or techniques are limited.

- The recommanded third for dialysis dose should be allocated in priority for the low responder and as soon as possible when the results is known. If serologic tests are not available, this third dose could be reserved for the patients at risk of low response (for example immunocompromised status or age >80 years old, or no iRAS therapy, or Lymphocytes <0.8G/L, or CRP >20mg/L).

- On the opposite, the third dose should be delayed for the others until their IgG titers drop below 500AU/mL with monitoring every 3-6 months during pandemic times.

- The dialysis patients with no seroconversion (only 3 patients out of the 193 after the complete round of the third vaccinations) should be identified for prespecified precautions as discussed in RESPONSE 4. Considering this very low prevalence, we then suggest to reserve these precautions to the population of low responders (IgG <500AU/mL).

We modified the algorithm in Figure 2 to integrate these considerations and add précisions in the text to support and explain this strategy.

« Adapted to circulating viral variants » anticipates the continuation of the pandemic. It postulates that new generation of mRNA vaccines might be generated to better fit with evolution of the virus.

Reviewer #3: This review is on the statistical aspects of the paper.

The statistical analysis part is well-written. I only have 2 minor comments.

1. page 5, line 114, why the p-value threshold is set at 0.15?

2. Table 1. the p-value should use the same number of significant digits.

1. Although there is no absolute threshold for p-value in univariate analysis for variables included in multivariate analysis to our knowledge, we modified for a more classical p-value of 0.1

2. We standardized the p-value for the same number of digits in table 1.

________________________________________

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachment

Submitted filename: Response to Reviewer.docx

Decision Letter 1

Etsuro Ito

7 Sep 2021

Humoral response after SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times.

PONE-D-21-16866R1

Dear Dr. BACHELET,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Etsuro Ito

Academic Editor

PLOS ONE

Acceptance letter

Etsuro Ito

24 Sep 2021

PONE-D-21-16866R1

Humoral response after SARS-CoV-2 mRNA vaccines in dialysis patients: Integrating anti-SARS-CoV-2 Spike-Protein-RBD antibody monitoring to manage dialysis centers in pandemic times.

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