Table 1.

Example output of KwARG for the Kreitman dataset

Seed	T	C SE	C RM	CR	C RR	SE	RM	R	$\sum _t\left|{\mathcal{N}}_t\right|$
2263536315	30.0	$\infty$	$\infty$	1.00	2.00	0	0	7	143
2347021759	30.0	0.90	0.91	1.00	2.00	1	0	6	853
1791455164	30.0	0.80	0.81	1.00	2.00	1	0	5	728
1684879495	30.0	0.60	0.61	1.00	2.00	2	0	4	783
1884182000	30.0	0.40	0.41	1.00	2.00	3	0	3	806
1900122424	30.0	0.20	0.21	1.00	2.00	5	0	2	702
2111915557	30.0	0.10	0.11	1.00	2.00	8	0	1	833
2888657821	30.0	0.01	0.02	1.00	2.00	10	0	0	715

Note: SE: number of recurrent mutations occurring on terminal branches of the ARG (possible sequencing errors); RM: number of other recurrent mutations; R: number of recombinations. Last column gives the total number of neighbourhood states considered.