Abstract
Simple Summary
There is limited information on how SARS-CoV-2 reaches the brain. Thus, this paper examines how, during co-infection, a protease-secreting microbe may facilitate brain invasion by SARS-CoV-2. An understanding of this potential invasion mechanism could lead to better SARS-CoV-2 intervention measures.
Abstract
SARS-CoV-2 has been shown to display proclivity towards organs bearing angiotensin-converting enzyme (ACE2) expression cells. Of interest herein is the ability of the virus to exhibit neurotropism. However, there is limited information on how this virus invades the brain. With this contribution, we explore how, in the context of a microbial co-infection using a cryptococcal co-infection as a model, SARS-CoV-2 could reach the brain. We theorise that the secretion of proteases by disseminated fungal cells might also activate the S2 domain of the viral spike glycoprotein for membrane fusion with brain endothelial cells leading to endocytosis. Understanding this potential invasion mechanism could lead to better SARS-CoV-2 intervention measures, which may also be applicable in instances of co-infection, especially with protease-secreting pathogens.
Keywords: Cryptococcus, co-infection, neurotropism, protease, SARS-CoV-2
1. Introduction
The respiratory failure caused by the novel coronavirus was first reported in December 2019 in Wuhan, China [1]. Today, this novel virus has been classified as a severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2; commonly known as COVID-19). The virus targets the human pulmonary system with frequent detection in the nasopharynges swab (sensitive) and saliva (more sensitive) either with antibody–antigen immunoassay or real-time polymerase chain reaction (RT-PCR) diagnosis [2,3,4,5,6,7]. When inhaled, the virus could reach the lung space and inflame the alveoli, increasing levels of pro-inflammatory cytokines—leading to the infiltration of mononuclear cells (such as lymphocytes, monocytes, and macrophages) and accumulation of fluid in the lungs [8]. Further work showed that signalling pathways involving G-protein coupled receptors (GPCR) are usually arrested during pulmonary SARS-CoV-2 infection. This leads to perturbation of epithelial transport processes and homeostasis surface secretion involving cystic fibrosis transmembrane conductance regulator (CFCR) protein kinase A coupled Cl− channel and epithelial Na+ channel [9]. We speculate that accumulated fluid from incontinence secretion from pneumocytes may be due to epithelial surfactant degradation and dysfunctional endothelial cells from impaired nitric oxide bioavailability caused by this infection. This consequently results in a pneumonialike disease with difficulties in gas exchange, making it hard to receive enough oxygen and expel carbon dioxide. The symptoms of pneumonia can range from mild to severe, including cough, loss of appetite, shortness of breath, fever, and chest pain [10,11,12]. However, severe cases can lead to acute respiratory distress syndrome (ARDS) and, subsequently, multiple organ failure in the lungs, heart, brain, kidney, and others [13,14,15,16].
SARS-CoV-2 is the current seventh member of the coronaviridae family (genus: β-coronavirus), exclusively infecting humans [1], but some wild animals are considered to be the carriers of this virus, especially bats [17] and Malayan pangolins [18,19]. Inarguably, SARS-CoV-2 infection is generally acquired from a contaminated environment, and it is rapidly transmitted via person-to-person contact [16,20,21,22]. SARS-CoV-2 is assigned a basic reproduction rate between 2.2–2.5 [21,23], which means every potential carrier, usually asymptomatic/atypical symptomatic, could have spread the infection to more than two people in their immediate environment. Significantly, SARS-CoV-2 transmission is driven by the family cluster more than the community spread [24].
A large proportion of the mortality comes from patients with underlying diseases. By assessing the risk factors associated with adult COVID-19 patients in various studies, hypertension, diabetes, chronic obstructive pulmonary disease (COPD), cardiovascular or cerebrovascular disease, hepatic dysfunction, obesity, renal failure, and cancer have become the dominant comorbidities with the highest mortality rate [16,25,26,27,28,29,30,31,32]. An interesting disease aspect is the manifestation of SARS-CoV-2 pneumonia in the presence of other invasive, pneumonia-causing bacteria and fungi. However, research into the existence of such co-infections lags far behind that of non-infectious diseases (Table 1). In Jiangsu, China, early assessment of COVID-19 patients for microbial co-infections (i.e., within one to four days of SARS-CoV-2 infection) showed that over 90% of such patients were infected with other respiratory pathogens, more so bacterial pathogens [33]. More importantly, the proportion of mixed co-infections was also confirmed to increase with SARS-CoV-2 severity. The above study is critical as it shows how such co-infections may hamper the vaccine response.
Table 1.
The Co-Occurrence of SARS-CoV-2 with Other Infections | |||||
---|---|---|---|---|---|
Non-Infectious Conditions | Aetiological Agents | ||||
Scopus | PubMed | Scopus | PubMed | ||
Meningitis-causing agents | |||||
Cancer | 42,719 | 12,180 | M. tuberculosis | 8440 | 1206 |
Diabetes | 26,288 | 6663 | S. pneumoniae | 1065 | 122 |
Hypertension | 16,623 | 4393 | P. aeruginosa | 1773 | 107 |
Obesity | 14,643 | 2923 | H. capsulatum | 49 | 8 |
Cerebrovascular disease | 4351 | 1628 | C. neoformans | 160 | 11 |
Asthma | 8238 | 1358 | Mucoralean spp. | 4 | 26 |
Non-meningitis-causing agents | |||||
Renal failure | 6098 | 1656 | A. fumigatus | 435 | 44 |
Chronic obstructive pulmonary disease | 4613 | 779 | Ca. albicans | 840 | 36 |
Hepatic dysfunction | 1698 | 1956 | Ca. auris | 187 | 107 |
The data was generated by searching Scopus (period: 2020–2021) and Pubmed (period: 2020–2021) using “SARS-CoV-2” and a “specific non-infectious condition” or a “specific aetiological agent”. M. = Mycobacterium; S. = Streptococcus; P. = Pseudomonas; A. = Aspergillus; Ca. = Candida; C. = Cryptococcus; H. = Histoplasma.
Therefore, there is an urgent need to research how SARS-CoV-2 pneumonia differs from other types of pneumonia. Moreover, such studies could potentially assist in understanding how SARS-CoV-2 may disseminate to invade other organ systems. Herein, we speculated that patients infected with SARS-CoV-2 would also be at a greater risk of co-developing the opportunistic cryptococcal pulmonary infection. More importantly, we use a cryptococcal infection as a possible model to explain how SARS-CoV-2 could invade the brain. This organism is endowed with a pool of extracellular hydrolytic proteases that may modulate SARS-CoV-2 proteolytic activation or degrading the cellular gap junction extracellular matrix to promote transcellular migration. One such example is the action of cryptococcal serine proteases, metalloproteases and aspartyl peptidases, capable of compromising the cell gap junction and enhancing the intracranial invasion of viral particles. In this paper, we examined the pathogenesis of SARS-CoV-2 and proposed a possible role of C. neoformans serine proteases, metalloproteases (the fungalysin, Mpr1) and aspartyl peptidases (Major aspartyl peptidase 1, May1) in enhancing SARS-CoV-2 brain invasion. We, thus, re-iterated the need to consider the microbial co-infection with SARS-CoV-2 in the management of the COVID-19 pandemic.
2. SARS-CoV-2: Current Understanding of Its Possible Brain Invasion
The route of viral dissemination into the brain region remains an enigma; however, neurological dysfunctions associated with brain and central nervous system (CNS) invasion by this virus has been emphasised [34,35,36,37,38,39,40]. In the earlier report of SARS-CoV-1 brain invasion in human angiotensin-converting enzyme (hACE2) transgenic mice, brain invasion occurred via the olfactory bulb with a rapid infection that spreads transneuronally, resulting in a significant neuropathy in the cardiorespiratory region of the medulla, causing death [41]. This report demonstrates the significance of ACE in the neuronal and glial cells viral invasion in the human CNS. For this reason, it has been speculated that SARS-CoV-2 may invade the human brain parenchyma, causing neuronal dysfunction; however, little is known about how SARS-CoV-2 reaches the brain. The extrapulmonary dissemination of SARS-CoV-2 via the blood and lymphatic vessels is established, and the tendency to invade and infect other organs of the human body is very high. This is because almost all the vital organs of the body possess ACE2-expressing cells, including the vascular endothelial cells and arterial smooth muscle cells [42]. A few investigations on the systemic spreading and organ invasion of SARS-CoV-2 have shown that this virus may spread into the brain via hematogenous dissemination, synaptic end junction via a neural pathway, and retrograde/anterograde neurones [41,43,44,45]. The neuropathic effect of SARS-CoV-2 is caused via the invasion of the meningeal endothelial layer within the blood–brain barrier (BBB), which makes the virus associate with the ACE2 receptor-expressing neuroglial cells in the medulla region of the brain.
As described in Figure 1, SARS-CoV-2 approaches hACE2 through the S2 domain of the spike glycoprotein, exposing the Furin-like bridge between the S1–S2 protein to transmembrane serine protease (TMPRSS2) and subsequently activates the S2 domain for membrane fusion and endocytosis [46]. There is speculation that proteolytic cleavage of SARS-CoV-2 S-protein creates an unstable receptor binding domain of the viral S-glycoprotein that quickly identify their host ACE2 membrane receptor for membrane fusion and subsequent endocytosis [47,48].
The resultant infection may lead to an infected individual experiencing loss of smell and taste, anxiety, dizziness, depression, aggression, confusion, ataxia, seizures, Guillain–Barré syndrome, meningoencephalitis, acute ischemia, haemorrhagic stroke, and respiratory failure [11,16,43,49,50,51,52,53,54,55,56,57].
It is also plausible that macrophages could carry the virus across the BBB. Here, the virus could attack the endothelial cells causing the BBB damage via the intracranial cytokine storm/infiltration [58,59]. The cytokine storm comes from systemic inflammation or direct attack on the T-lymphocytes and macrophages [60,61]. The subgroups of macrophages express ACE2, such as the cluster of differentiation 68 (CD68+) and CD169+, which may act as Trojan horses carrying the viral particles across the BBB via transcytosis. This event has been linked to the viral spread, tissue inflammation, and lymphopenia experienced during COVID-19 infection [62]. The evidence of the virus in the cerebrospinal fluid (CSF) and the brain region showed that viral invasion is possible; therefore, inter-synaptic CNS viral invasion cannot be ruled out.
3. Possible Role of Cryptococcal Proteases in Promoting Brain Invasion in the Context of Co-Infection with SARS-COV-2
Proteases perform multiple roles in the normal immune response to tissue injury or microbial colonisation. For example, host-derived proteases assist in the recruitment of immune cells to infection sites by deteriorating the basement of membranes [63]. The endothelial barrier breakdown creates a passage that allows immune cells to migrate from the blood to reach the inflamed tissue. However, if the secretion of these enzymes is not regulated within an organism, it could impair physiological homeostasis [64]. In turn, this might unintentionally promote microbial pathogenesis by organisms such as Cryptococcus neoformans, which operate optimally at the apex of a proteolytic storm. Typically, in such a scenario, the presence of invading microbes induces the production of pro-inflammatory cytokines, which at the same time increases the levels of proteases [65]. In addition to this, Elkington argued that such pathogens could also purposefully secrete microbial proteases to skew the immune response towards tissue damage to promote invasion (Table 2). There are a number of proteases, which are classified according to their catalytic mechanism—based on the configuration of the active site [66], and the reader may peruse several databases that provide information on proteases, such as MEROPS (https://www.ebi.ac.uk/merops, accessed on 28 June 2021), Degradome (http://degradome.uniovi.es, accessed on 1 July 2021) and Proteolysis map (https://web.archive.org/web/20170420071011/http://sonny.burnham.org/proteases, accessed on 1 July 2021) [67,68,69]. Of interest herein is the cryptococcal serine-based protease, metalloprotease (fungalysin, Mpr1) and aspartyl peptidases (May1).
Table 2.
Sequence | Type | Source | MW (kDa) | pH | Catalytic Residue | Zinc Chelating | Traditional Function | Purported Function in the Context of SARS-CoV-2 Infection | References |
---|---|---|---|---|---|---|---|---|---|
1 | Serine-based protease (uncharacterised) | Cryptococcus neoformans | 75 | 7.2 | Ser | No | Promotes fungal brain invasion | May activate the viral S protein or promote viral transcellular migration | [72,77,78] |
2 | Fungalysin (metalloprotease, Mpr1) | Cryptococcus neoformans | 42 | 7.5–8.0 | Glu, Tyr, Asp | Yes | Promotes fungal brain invasion | May activate the viral S protein or promote viral transcellular migration | [79,80,81] |
3 | Major aspartyl peptidase (May1) | Cryptococcus neoformans | 45 | 5 | Asp | No | Promotes fungal brain invasion | May activate the viral S protein or promote viral transcellular migration | [71,82] |
4 | Furin (serine-based) |
Homo sapiens (Human) | 104 | 5–8 | Asp, His, Ser | No (calcium-chelating) | Activates functionally important protein precursors | Activates the viral S protein for membrane fusion into cells | [83,84,85] |
5 | Transmembrane serine protease 2 (TMPRSS2) (serine-based) | Homo sapiens (Human) | 58 | 8 | His, Asp, Ser | No (calcium-chelating) | Promotes spike protein cleavage and activation for membrane fusion and viral uptake | Activates the viral S protein for membrane fusion into cells | [86,87,88] |
The fungalysin and a closely related bacterial M4 family of proteases called thermolysin share a conserved Pfam domain called FTP (fungalysin/thermolysin propeptide) in their propeptides. They display a domain organisation that has a large pro-domain with an activation locus, a catalytic domain with a zinc-binding site, and a C-terminal hemopexin domain [64,70]. Kryštůfek et al. [71] reported that homology modelling predicted that the May1 adopts a renin fold, which is a predominantly β-sheet conformation characteristic of the aspartyl proteinase family. The substrate-binding cleft and the active site are at the junction of two structurally similar domains of approximately equal size. Moreover, the catalytic residues are located centrally in the cleft with the carboxyl side chains and surrounding main chain scaffolding related by an approximate twofold interdomain axis [71]. The cryptococcal serine-based protease(s) are, at present, unnamed [72]. It is plausible that, like other serine-based proteases, this cryptococcal protease is similarly organised with serine as the nucleophilic amino acid in the active site. It is unknown if this protease is trypsin-like or subtilisin-like.
Often when invading cryptococcal cells in the lung space are not arrested, they can disseminate via a haematogenous route to invade every organ of the body [73]. However, cells have a particular predilection for the brain. For cryptococcal cells to reach the brain, they have to cross the blood–brain barrier (BBB) to cause a fatal infection called meningitis [74,75]. To achieve this, cells can traverse between the damaged tight junctions of the BBB via a paracellular passage [76]. Here, the cryptococcal proteases are, in part, instrumental in this regard. These proteins are secreted extracellularly by cryptococcal cells to promote host invasion [77,78,79,80,81].
In the same way, proteolytic activation of SARS-CoV-2 is required prior to membrane fusion and endocytosis (Figure 1). There is evidence that shows that the viral spike protein can be primed for fusion activation by endosomal acidification where cathepsin L resides and proteolytic cleavage by exogenous proteases is 100- to 1000-fold more efficient [89]. Therefore, it is reasonable to suggest that the cryptococcal proteases could activate viral membrane fusion because of the ability of this fungus to thrive in acidic environments. Thus, any inhibitor of endosomal acidification will inhibit the growth of cryptococcal cells, and in turn, limit viral entry. It has been shown that weak acids such as chloroquine and primaquine are able to accumulate inside organelles such as endosomes and macrophages by ion trapping [90,91]. This results in the neutralization of the internal pH. The raised pH is reported to impair the proteolytic action of enzymes and limits the availability of nutrients crucial for the growth and survival of internalised microbes [92,93,94].
By speculation, we envisaged that any pathological condition that weakens the blood–brain barrier (BBB) and brain endothelial blood vessels would increase intracranial invasion of the viral particles via transcellular migration (Figure 2). Therefore, by necessary implication, this may also be true for other protease-secreting microbes. The above discussion shows that the production of proteases may be an ideal target for drug development or repositioning because of their precise and impeccable roles in activating pathogen-related processes.
Apart from the potential roles of microbial proteases to activate or aid in the tissue invasion of the SARS-CoV2 virus, human tissues host a vast majority of these proteases, which include secreted proteases (trypsin, chymotrypsin, renin, elastin, kallikrein, plasmin), membrane-surface expressed proteases such as ACE, compartmentalised proteases including the cathepsin family (B, G, H, and L), lysosyme, ribozyme, and nucleoproteases. Some are pH-dependent (such as cathepsin), metal-dependent (such as metalloproteinases), or position-dependent (such as carboxypeptidase, endo- and exo-peptidases). Based on the catalytic site of each of these enzymes, they are further classified as serine-, threonine-, cysteine-, and aspartyl-proteases. The majority of the host secreted proteases are promiscuous in their activities [95]; therefore, their actions have to be guided by the systemic activation–deactivation cycles. Surface receptor expressed protease (like ACE), ribozyme, and nucleoproteinase are very specific and only respond to inducers, activators, or repressors.
Regarding the activation of SARS-CoV-2 viral particle, ACE-2 exquisitely exhibits specific activity to this receptor binding-pseudo-substrate due to the presence of receptor- binding domain on the SARS-CoV-2 S1 spike protein, which eventually exposes the Furin-like linkage between the S1 and S2 domains of the viral spike glycoprotein. This single activation initiates the endocytotic movement of the viral particles [96]. In addition to this serine-protease carboxypeptidase, cathepsin is another pH-dependent C1-family member of papain-like cysteine protease that is abundant in all cells and can specifically initiate the activation and internalisation of SARS-CoV-2 viral particles, albeit at a lower activity compared to the serine protease. Apart from these two proteases, other host proteases may not activate the SARS-CoV-2 virus. By inference, we proposed that similar serine- or papain-like cysteine protease from infectious bacteria and fungi can co-activate the SARS-CoV-2 viral particle to aggravate the pathological conditions. This may be true if the enzymes share some level of amino acid homology with the host proteases.
Like other enzymes in living systems, the action of proteases is also tightly controlled by inhibitors, which can arrest their catalytic activity. Animal (vertebrate) protease inhibitors are localised in tissues as secretory proteins that block the activity of endogenous and exogenous proteases to prevent unwanted proteolysis [66]. Commercial sources of serine-based protease inhibitors, some of which are biologically extracted and purified, showing specificity towards mammalian serine proteases, may be useful in this regard. In addition to this, the papain-like cysteine protease inhibitors such as leupeptin, E64, E64d, E64c, and cystatin can modify the thiol group at the active site of this enzyme to block its activity. The potencies of these protease inhibitors have been demonstrated to reduce viral antigen titre by targeting cathepsin L (CatL) [97,98]. A vast majority of these inhibitors against the serine, threonine, and cysteine-protease activities and their biological applications have been well documented [99,100].
Concerning SARS-CoV-2, there is evidence that shows that specific protease inhibitors could block the viral cellular entry. In a cell model viral entry system, a commercially available serine protease inhibitor, camostat mesylate, partially blocked the SARS-CoV viral entry [101,102]. However, total inhibition of entry was observed when combined with cathepsin Β/H/L cysteine inhibitor, E-64d (known under different names such as aloxistatin/loxistatin/(2S,3S)-trans-Epoxysuccinyl-L-leucylamido-3-methylbutane ethyl ester/(1S,2S)-2-(((S)-1-((4-Guanidinobutyl)amino)-4-methyl-1-oxopentan-2-yl)carbamoyl) cyclopropanecarboxylic acid) [102,103].
This E64d is the ethyl ester derivate of E64c, which has gained a lot of attention as a therapeutic agent both in animal and human studies to correct physiological dysfunction, regulated enzyme formation, and prevent viral activation [99,104]. To show the diversity of protease inhibitors, caspases are cysteine-aspartyl-dependent protease whose activity is not inhibited by the epoxysuccinate derivates of E64. However, this enzyme, together with other cysteine proteases such as papain, calpains, caspases, cathepsin B, H, and L, is inhibited by peptidylchloromethylketones—except cathepsin G, which is slowly inhibited [99]. As much as protease inhibitors hold promising therapeutic effects, thorough care should be put in place to weigh the physiological and disease-preventing effects of these inhibitors when applying clinically. For example, E64 and their family derivatives are potent inhibitors of cysteine proteases (cathepsin B, H, L, and calpain), reducing muscular dystrophy, improving locomotor activity, protecting proteoglycan degradation, preventing lesion and apoptosis, attenuating parathyroid hormonal effect on calpain, preventing viral replication and coronavirus protein processing and other biological effects; however, it is associated with hepatic injury, teratogenesis, and attenuated myofibril assembly [99]. The use of protease inhibitors in the treatment of other viral pathogens, such as HIV and hepatitis C, is already established. Unfortunately, treatment can also induce metabolic syndromes such as dyslipidemia [105]. At the moment, Pfizer is exploring the use of a protease inhibitor viz. SARS-CoV-2-3CL, to inhibit viral entry. The drug is reported to have potent in vitro anti-viral activity against SARS-CoV-2 [106]. It will be interesting to observe if the therapeutic benefits of this drug will outweigh its side-effects.
4. Conclusions
An understanding of how the priming of the spike protein occurs is fundamental to understanding viral pathogenesis. We speculate that the regulation of protease levels via inhibiting the growth of protease-secreting microbes may contribute to the impairment of host invasion by SARS-CoV-2. Therefore, there is a need to accurately diagnose and resolve underlying microbial infections, which may exogenously avail proteases within an afflicted host—and unintentionally promote SARS-CoV-2 invasion. The latter is also applicable to all infectious members of the β-coronavirus genus that could cause pathological conditions in people with underlying microbial infections.
Acknowledgments
Parts of this manuscript are contained in the thesis of N.M.
Author Contributions
Conceptualisation, N.M., O.S.F., A.O.O. and O.M.S.; writing—original draft preparation, N.M.; writing—review and editing, N.M., O.S.F., A.O.O. and O.M.S.; supervision: O.S.F., A.O.O. and O.M.S. All authors have read and agreed to the published version of the manuscript.
Funding
This research received no external funding.
Institutional Review Board Statement
Not applicable.
Informed Consent Statement
Not applicable.
Data Availability Statement
The data presented in this study are available in the article.
Conflicts of Interest
The authors declare no conflict of interest. This paper does not take any position for or against any decision of a political or economic nature.
Footnotes
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.
References
- 1.Zhu X., Ge Y., Wu T., Zhao K., Chen Y., Wu B., Zhu F., Zhu B., Cui L. Co-infection with respiratory pathogens among COVID-2019 cases. Virus Res. 2020;285:1–6. doi: 10.1016/j.virusres.2020.198005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Bruce E.A., Huang M.L., Perchetti G.A., Tighe S., Laaguiby P., Hoffman J.J., Gerrard D.L., Nalla A.K., Wei Y., Greninger A.L., et al. Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step. PLoS Biol. 2020;18:e3000896. doi: 10.1371/journal.pbio.3000896. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Iwasaki A., Yang Y. The potential danger of suboptimal antibody responses in COVID-19. Nat. Rev. Immunol. 2020;20:339–341. doi: 10.1038/s41577-020-0321-6. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Procop G.W., Shrestha N.K., Vogel S., van Sickle K., Harrington S., Rhoads D.D., Rubin B.P., Terpeluk P. A Direct Comparison of Enhanced Saliva to Nasopharyngeal Swab for the Detection of SARS-CoV-2 in Symptomatic Patients. J. Clin. Microbiol. 2020;58:1–6. doi: 10.1128/JCM.01946-20. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Wyllie A.L., Fournier J., Casanovas-Massana A., Campbell M., Tokuyama M., Vijayakumar P., Geng B., Muenker M.C., Moore A.J., Vogels C.B.F., et al. Saliva is more sensitive for SARS-CoV-2 detection in COVID-19 patients than nasopharyngeal swabs. medRxiv. 2020:1–12. doi: 10.1101/2020.04.16.20067835. [DOI] [Google Scholar]
- 6.Sidonie L.N., Alexis C., Samuel L.P., Christelle V.F., Laurence M.J., Anne-Marie R.A., Le G.J., Delaugerre C. Evalua-tion of a Rapid Diagnostic Assay for Detection of SARS-CoV-2 Antigen in Nasopharyngeal Swabs. J. Clin. Microbiol. 2021;58:1814–1820. doi: 10.1128/JCM.00977-20. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Wei Z., Ryhana M., Elizabeth S.J., BG J.M.A. Comparison of Four Molecular In Vitro Diagnostic Assays for the Detec-tion of SARS-CoV-2 in Nasopharyngeal Specimens. J. Clin. Microbiol. 2021;58:1–8. doi: 10.1128/JCM.00743-20. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Routley N. Visualizing What COVID-19 Does to Your Body. [(accessed on 26 June 2021)]. Available online: https://www.visualcapitalist.com/visualizing-what-covid-19-does-to-your-body/
- 9.Hameid R.A., Cormet-Boyaka E., Kuebler W.M., Uddin M., Berdiev B.K. SARS-CoV-2 may hijack GPCR signaling pathways to dysregulate lung ion and fluid transport. Am. J. Physiol. Lung Cell Mol. Physiol. 2021;320:L430–L435. doi: 10.1152/ajplung.00499.2020. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Zaki A.M., Van Boheemen S., Bestebroer T.M., Osterhaus A.D.M.E., Fouchier R.A.M. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N. Engl. J. Med. 2012;367:1814–1820. doi: 10.1056/NEJMoa1211721. [DOI] [PubMed] [Google Scholar]
- 11.Chen J., Qi T., Liu L., Ling Y., Qian Z., Li T., Li F., Xu Q., Zhang Y., Xu S. Clinical progression of patients with COVID-19 in Shanghai, China. J. Infect. 2020;80:e1–e6. doi: 10.1016/j.jinf.2020.03.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Huang A., Lu M., Ling E., Li P., Wang C. A M35 family metalloprotease is required for fungal virulence against in-sects by inactivating host prophenoloxidases and beyond. Virulence. 2020;11:222–237. doi: 10.1080/21505594.2020.1731126. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Chu D.K.W., Pan Y., Cheng S.M.S., Hui K.P.Y., Krishnan P., Liu Y., Ng D.Y.M., Wan C.K.C., Yang P., Wang Q., et al. Molecular diagnosis of a novel coronavirus (2019-nCoV) causing an outbreak of pneumonia. Clin. Chem. 2020;66:549–555. doi: 10.1093/clinchem/hvaa029. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Lescure F.X., Bouadma L., Nguyen D., Parisey M., Wicky P.H., Behillil S., Gaymard A., Bouscambert-Duchamp M., Donati F., Le H.Q. Clinical and virological data of the first cases of COVID-19 in Europe: A case series. Lancet Infect. Dis. 2020;20:697–706. doi: 10.1016/S1473-3099(20)30200-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Machhi J., Herskovitz J., Senan A.M., Dutta D., Nath B., Oleynikov M.D., Blomberg W.R., Meigs D.D., Hasan M., Patel M. The natural history, pathobiology, and clinical manifestations of SARS-CoV-2 infections. J. Neuroimmune Pharmacol. 2020;15:359–386. doi: 10.1007/s11481-020-09944-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Wang T., Du Z., Zhu F., Cao Z., An Y., Gao Y., Jiang B. Comorbidities and multi-organ injuries in the treatment of COVID-19. Lancet. 2020;395:e52. doi: 10.1016/S0140-6736(20)30558-4. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Lau S.K.P., Luk H.K.H., Wong A.C.P., Li K.S.M., Zhu L., He Z., Fung J., Chan T.T.Y., Fung K.S.C., Woo P.C.Y. Pos-sible bat origin of severe acute respiratory syndrome coronavirus 2. Emerg. Infect. Dis. 2020;26:1542–1547. doi: 10.3201/eid2607.200092. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Lam T.T.Y., Jia N., Zhang Y.W., Shum M.H.H., Jiang J.F., Zhu H.C., Tong Y.G., Shi Y.X., Ni X.B., Liao Y.S. Identify-ing SARS-CoV-2-related coronaviruses in Malayan pangolins. Nature. 2020;583:282–285. doi: 10.1038/s41586-020-2169-0. [DOI] [PubMed] [Google Scholar]
- 19.Xiao K., Zhai J., Feng Y., Zhou N., Zhang X., Zou J.J., Li N., Guo Y., Li X., Shen X. Isolation of SARS-CoV-2-related coronavirus from Malayan pangolins. Nature. 2020;583:286–289. doi: 10.1038/s41586-020-2313-x. [DOI] [PubMed] [Google Scholar]
- 20.Chan J.F.W., Kok K.H., Zhu Z., Chu H., To K.K.W., Yuan S., Yuen K.Y. Genomic characterisation of the 2019 novel human pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan. Emerg. Microbes Infect. 2020;9:221–236. doi: 10.1080/22221751.2020.1719902. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Li Q., Guan X., Wu P., Wang X., Zhou L., Tong Y., Ren R., Leung K.S.M., Lau E.H.Y., Wong J.Y., et al. Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus–Infected Pneumonia. N. Engl. J. Med. 2020;382:1199–1207. doi: 10.1056/NEJMoa2001316. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Phan L.T., Nguyen T.V., Luong Q.C., Nguyen T.V., Nguyen H.T., Le H.Q., Nguyen T.T., Cao T.M., Pham Q.D. Importation and human-to-human transmission of a novel coronavirus in Vietnam. N. Engl. J. Med. 2020;382:872–874. doi: 10.1056/NEJMc2001272. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Petersen E., Koopmans M., Go U., Hamer D.H., Petrosillo N., Castelli F., Storgaard M., Al Khalili S., Simonsen L. Comparing SARS-CoV-2 with SARS-CoV and influenza pandemics. Lancet Infect. Dis. 2020;20:e238–e244. doi: 10.1016/S1473-3099(20)30484-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.WHO Report of the WHO-China Joint Mission on Coronavirus Disease 2019 (COVID-19)—16–24 Feburary 2020. [(accessed on 24 May 2021)]. Available online: https://www.who.int/docs/default-source/coronaviruse/who-china-joint-mission-on-covid-19-final-report.pdf.
- 25.Bhatraju P.K., Ghassemieh B.J., Nichols M., Kim R., Jerome K.R., Nalla A.K., Greninger A.L., Pipavath S., Wurfel M.M., Evans L. Covid-19 in critically ill patients in the Seattle region—Case series. N. Engl. J. Med. 2020;382:2012–2022. doi: 10.1056/NEJMoa2004500. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Chow N., Fleming-Dutra K., Gierke R., Hall A., Hughes M., Pilishvili T., CDC COVID-19 Response Team Prelimi-nary estimates of the prevalence of selected underlying health conditions among patients with coronavirus disease 2019—United States, 12 February–28 March 2020. MMWR Morb. Mortal. Wkly. Rep. 2020;69:382–386. doi: 10.15585/mmwr.mm6913e2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Ejaz H., Alsrhani A., Zafar A., Javed H., Junaid K., Abdalla A.E., Abosalif K.O.A., Ahmed Z., Younas S. COVID-19 and comorbidities: Deleterious impact on infected patients. J. Infect. Public Health. 2020;13:1833–1839. doi: 10.1016/j.jiph.2020.07.014. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Guan W.-J., Ni Z.-Y., Hu Y., Liang W.-H., Ou C.-Q., He J.-X., Liu L., Shan H., Lei C.-L., Hui D.S., et al. Clinical characteristics of coro-navirus disease 2019 in China. N. Engl. J. Med. 2020;382:1708–1720. doi: 10.1056/NEJMoa2002032. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Li Z., Wu M., Yao J., Guo J., Liao X., Song S., Li J., Duan G., Zhou Y., Wu X. Caution on kidney dysfunctions of COVID-19 patients. medRxiv. 2020:1–25. doi: 10.2139/ssrn.3559601. [DOI] [Google Scholar]
- 30.Simonnet A., Chetboun M., Poissy J., Raverdy V., Noulette J., Duhamel A., Labreuche J., Mathieu D., Pattou F., Jourdain M. High prevalence of obesity in severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) requiring invasive mechanical ventilation. Obesity. 2020;28:1195–1199. doi: 10.1002/oby.22831. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Yang X., Yu Y., Xu J., Shu H., Liu H., Wu Y., Zhang L., Yu Z., Fang M., Yu T. Clinical course and outcomes of criti-cally ill patients with SARS-CoV-2 pneumonia in Wuhan, China: A single-centered, retrospective, observational study. Lancet Respir. Med. 2020;8:475–481. doi: 10.1016/S2213-2600(20)30079-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Zheng Y.Y., Ma Y.T., Zhang J.Y., Xie X. COVID-19 and the cardiovascular system. Nat. Rev. Cardiol. 2020;17:259–260. doi: 10.1038/s41569-020-0360-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Zhu N., Zhang D., Wang W., Li X., Yang B., Song J., Zhao X., Huang B., Shi W., Lu R., et al. A Novel Coronavirus from Patients with Pneumonia in China, 2019. N. Engl. J. Med. 2020;382:727–733. doi: 10.1056/NEJMoa2001017. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Hung E.C.W., Chim S.S.C., Chan P.K.S., Tong Y.K., Ng E.K.O., Chiu R.W.K., Leung C.B., Sung J.J.Y., Tam J.S., Lo Y.M.D. Detection of SARS coronavirus RNA in the cerebrospinal fluid of a patient with severe acute respiratory syndrome. Clin. Chem. 2003;49:2108–2109. doi: 10.1373/clinchem.2003.025437. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Gu J., Gong E., Zhang B., Zheng J., Gao Z., Zhong Y., Zou W., Zhan J., Wang S., Xie Z. Multiple organ infection and the pathogenesis of SARS. J. Exp. Med. 2005;202:415–424. doi: 10.1084/jem.20050828. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Saad M., Omrani A.S., Baig K., Bahloul A., Elzein F., Matin M.A., Selim M.A.A., Al Mutairi M., Al Nakhli D., Al Aidaroos A.Y. Clinical aspects and outcomes of 70 patients with Middle East respiratory syndrome coronavirus infection: A single-center experience in Saudi Arabia. Int. J. Infect. Dis. 2014;29:301–306. doi: 10.1016/j.ijid.2014.09.003. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Helms J., Kremer S., Merdji H., Clere-Jehl R., Schenck M., Kummerlen C., Collange O., Boulay C., Fafi-Kremer S., Ohana M. Neurologic features in severe SARS-CoV-2 infection. N. Engl. J. Med. 2020;382:2268–2270. doi: 10.1056/NEJMc2008597. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Mao L., Jin H., Wang M., Hu Y., Chen S., He Q., Chang J., Hong C., Zhou Y.D., Wang X.M. Neurologic manifestations of hospitalised patients with coronavirus disease 2019 in Wuhan, China. JAMA Neurol. 2020;77:683–690. doi: 10.1001/jamaneurol.2020.1127. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Moriguchi T., Harii N., Goto J., Harada D., Sugawara H., Takamino J., Ueno M., Sakata H., Kondo K., Myose N. A first case of meningitis/encephalitis associated with SARS-Coronavirus-2. Int. J. Infect. Dis. 2020;94:55–58. doi: 10.1016/j.ijid.2020.03.062. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Zhou L., Zhang M., Wang J., Gao J. Sars-Cov-2: Underestimated damage to nervous system. Travel Med. Infect. Dis. 2020;36:101642. doi: 10.1016/j.tmaid.2020.101642. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Netland J., Meyerholz D.K., Moore S., Cassell M., Perlman S. Severe Acute Respiratory Syndrome Coronavirus Infection Causes Neuronal Death in the Absence of Encephalitis in Mice Transgenic for Human ACE2. J. Virol. 2008;82:7264–7275. doi: 10.1128/JVI.00737-08. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Hamming I., Timens W., Bulthuis M.L.C., Lely A.T., Navis G.J., van Goor H. Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. J. Pathol. 2004;203:631–637. doi: 10.1002/path.1570. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Li Y., Bai W., Hashikawa T. The neuroinvasive potential of SARS-CoV2 may play a role in the respiratory failure of COVID-19 patients. J. Med. Virol. 2020;92:552–555. doi: 10.1002/jmv.25728. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Wu Y., Xu X., Chen Z., Duan J., Hashimoto K., Yang L., Liu C., Yang C. Nervous system involvement after infection with COVID-19 and other coronaviruses. Brain Behav. Immun. 2020;87:18–22. doi: 10.1016/j.bbi.2020.03.031. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Zhou P., Yang X.L., Wang X.G., Hu B., Zhang L., Zhang W., Si H.R., Zhu Y., Li B., Huang C.L. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020;579:270–273. doi: 10.1038/s41586-020-2012-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Hartenian E., Nandakumar D., Lari A., Ly M., Tucker J.M., Glaunsinger B.A. The molecular virology of coronaviruses. J. Biol. Chem. 2020;295:12910–12934. doi: 10.1074/jbc.REV120.013930. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Andersen K.G., Rambaut A., Lipkin W.I., Holmes E.C., Garry R.F. The proximal origin of SARS-CoV-2. Nat. Med. 2020;26:450–452. doi: 10.1038/s41591-020-0820-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48.Wrobel A.G., Benton D.J., Xu P., Roustan C., Martin S.R., Rosenthal P.B., Skehel J.J., Gamblin S.J. SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects. Nat. Struct. Mol. Biol. 2020;27:763–767. doi: 10.1038/s41594-020-0468-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Al Saiegh F., Ghosh R., Leibold A., Avery M.B., Schmidt R.F., Theofanis T., Mouchtouris N., Philipp L., Peiper S.C., Wang Z.X. Status of SARS-CoV-2 in cerebrospinal fluid of patients with COVID-19 and stroke. J. Neurol. Neurosurg. Psychiatry. 2020;91:846–848. doi: 10.1136/jnnp-2020-323522. [DOI] [PubMed] [Google Scholar]
- 50.Baig A.M., Khaleeq A., Ali U., Syeda H. Evidence of the COVID-19 virus targeting the CNS: Tissue distribution, host–virus interaction, and proposed neurotropic mechanisms. ACS Chem. Neurosci. 2020;11:995–998. doi: 10.1021/acschemneuro.0c00122. [DOI] [PubMed] [Google Scholar]
- 51.Chen T., Wu D., Chen H., Yan W., Yang D., Chen G., Ma K., Xu D., Yu H., Wang H., et al. Clinical characteristics of 113 deceased patients with coronavirus disease 2019: Retrospective study. BMJ. 2020;368:m1091. doi: 10.1136/bmj.m1091. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52.Chen N., Zhou M., Dong X., Qu J., Gong F., Han Y., Qiu Y., Wang J., Liu Y., Wei Y. Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: A descriptive study. Lancet. 2020;395:507–513. doi: 10.1016/S0140-6736(20)30211-7. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 53.Duong L., Xu P., Liu A. Meningoencephalitis without respiratory failure in a young female patient with COVID-19 infection in Downtown Los Angeles, early April 2020. Brain Behav. Immun. 2020;87:1–33. doi: 10.1016/j.bbi.2020.04.024. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54.Eliezer M., Hautefort C., Hamel A.-L., Verillaud B., Herman P., Houdart E., Eloit C. Sudden and complete olfactory loss of function as a possible symptom of COVID-19. JAMA Otolaryngol. Neck Surg. 2020;146:674–675. doi: 10.1001/jamaoto.2020.0832. [DOI] [PubMed] [Google Scholar]
- 55.Oxley T.J., Mocco J., Majidi S., Kellner C.P., Shoirah H., Singh I.P., Singh I.P., De Leacy R.A., Shigematsu T., Ladner T.R., et al. Large-vessel stroke as a presenting feature of Covid-19 in the young. N. Engl. J. Med. 2020;382:e60(1)–e60(3). doi: 10.1056/NEJMc2009787. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Rogers J.P., Chesney E., Oliver D., Pollak T.A., McGuire P., Fusar-Poli P., Zandi M.S., Lewis G., David A.S. Psychiatric and neuropsychiatric presentations associated with severe coronavirus infections: A systematic review and meta-analysis with comparison to the COVID-19 pandemic. Lancet Psychiatry. 2020;7:611–627. doi: 10.1016/S2215-0366(20)30203-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Zhao H., Shen D., Zhou H., Liu J., Chen S. Guillain-Barré syndrome associated with SARS-CoV-2 infection: Causality or coincidence? Lancet Neurol. 2020;19:383–384. doi: 10.1016/S1474-4422(20)30109-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Mehta P., McAuley D.F., Brown M., Sanchez E., Tattersall R.S., Manson J.J. COVID-19: Consider cytokine storm syndromes and immunosuppression. Lancet. 2020;395:1033–1034. doi: 10.1016/S0140-6736(20)30628-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59.Poyiadji N., Shahin G., Noujaim D., Stone M., Patel S., Griffith B. COVID-19–associated Acute Hemorrhagic Necrotizin Encephalopathy: Imaging Features. Radiology. 2020;296:E119–E120. doi: 10.1148/radiol.2020201187. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60.Grifoni A., Weiskopf D., Ramirez S.I., Mateus J., Dan J.M., Moderbacher C.R., Rawlings S.A., Sutherland A., Premkumar L., Jadi R.S. Targets of T cell responses to SARS-CoV-2 coronavirus in humans with COVID-19 disease and unexposed individuals. Cell. 2020;181:1489–1501. doi: 10.1016/j.cell.2020.05.015. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 61.Zhang H., Kang Z., Gong H., Xu D., Wang J., Li Z., Cui X., Xiao J., Meng T., Zhou W. The digestive system is a potential route of 2019-nCov infection: A bioinformatics analysis based on single-cell transcriptomes. BioRxiv. 2020:1–20. doi: 10.1101/2020.01.30.927806. [DOI] [Google Scholar]
- 62.Park M.D. Macrophages: A Trojan horse in COVID-19? Nat. Rev. Immunol. 2020;20:351. doi: 10.1038/s41577-020-0317-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 63.Elkington P.T.G., O’kane C.M., Friedland J.S. The paradox of matrix metalloproteinases in infectious disease. Clin. Exp. Immunol. 2005;142:12–20. doi: 10.1111/j.1365-2249.2005.02840.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64.Vilcinskas A., Wedde M. Insect inhibitors of metalloproteinases. IUBMB Life. 2002;54:339–343. doi: 10.1080/15216540216040. [DOI] [PubMed] [Google Scholar]
- 65.Master S.S., Rampini S.K., Davis A.S., Keller C., Ehlers S., Springer B., Timmins G.S., Sander P., Deretic V. Mycobacterium tuberculosis Prevents Inflammasome Activation. Cell Host Microbe. 2008;3:224–232. doi: 10.1016/j.chom.2008.03.003. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 66.Marathe K.R., Patil R.H., Vishwakarma K.S., Chaudhari A.B., Maheshwari V.L. Studies in Natural Products Chemistry. Elsevier; Rahman, The Netherlands: 2019. Protease inhibitors and their applications: An overview; pp. 211–242. [DOI] [Google Scholar]
- 67.Igarashi Y., Heureux E., Doctor K.S., Talwar P., Gramatikova S., Gramatikoff K., Zhang Y., Blinov M., Ibragimova S.S., Boyd S., et al. PMAP: Databases for analysing proteolytic events and pathways. Nucleic Acids Res. 2008;37:D611–D618. doi: 10.1093/nar/gkn683. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 68.Quesada V., Ordóñez G.R., Sánchez L.M., Puente X.S., López-Otín C. The degradome database: Mammalian proteases and diseases of proteolysis. Nucleic Acids Res. 2009;37:D239–D243. doi: 10.1093/nar/gkn570. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 69.Rawlings N.D., Barrett A.J., Thomas P.D., Huang X., Bateman A., Finn R.D. The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database. Nucleic Acids Res. 2018;46:D624–D632. doi: 10.1093/nar/gkx1134. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 70.Llano E., Pendás A.M., Aza-Blanc P., Kornberg T.B., Lopez-Otin C. Dm1-MMP, a matrix metalloproteinase from Drosophila with a potential role in extracellular matrix remodeling during neural development. J. Biol. Chem. 2000;275:35978–35985. doi: 10.1074/jbc.M006045200. [DOI] [PubMed] [Google Scholar]
- 71.Kryštůfek R., Šácha P., Starková J., Brynda J., Hradilek M., Tloušt’ová E.G.J., Rut W., Boucher M.J., Drąg M., Majer P., et al. Re-emerging Aspartic Protease Targets: Examining Cryptococcus neoformans Major Aspartyl Peptidase 1 as a Target for Antifungal Drug Discovery. J. Med. Chem. 2021;64:6706–6719. doi: 10.1021/acs.jmedchem.0c02177. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 72.Strickland A.B., Shi M. Mechanisms of fungal dissemination. Cell Mol. Life Sci. 2021;78:3219–3238. doi: 10.1007/s00018-020-03736-z. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 73.Esher S.K., Zaragoza O., Alspaugh J.A. Cryptococcal pathogenic mechanisms: A dangerous trip from the environment to the brain. Mem. Inst. Oswaldo Cruz. 2018;113:1–15. doi: 10.1590/0074-02760180057. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 74.García-Rodas R., Zaragoza O. Catch me if you can: Phagocytosis and killing avoidance by Cryptococcus neoformans. FEMS Immunol. Med. Microbiol. 2012;64:147–161. doi: 10.1111/j.1574-695X.2011.00871.x. [DOI] [PubMed] [Google Scholar]
- 75.Gaylord E.A., Choy H.L., Doering T.L. Dangerous liaisons: Interactions of Cryptococcus neoformans with host phagocytes. Pathogens. 2020;9:891. doi: 10.3390/pathogens9110891. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 76.Liu T.B., Perlin D.S., Xue C. Molecular mechanisms of cryptococcal meningitis. Virulence. 2012;3:173–181. doi: 10.4161/viru.18685. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 77.Rodrigues M.L., Dos R.F.C.G., Puccia R., Travassos L.R., Alviano C.S. Cleavage of human fibronectin and other basement membrane-associated proteins by a Cryptococcus neoformans serine proteinase. Microb. Pathog. 2003;34:65–71. doi: 10.1016/S0882-4010(02)00195-X. [DOI] [PubMed] [Google Scholar]
- 78.Vu K., Tham R., Uhrig J.P., Thompson G.R., Pombejra S.N., Jamklang M., Bautos J.M., Gelli A. Invasion of the central nervous system by Cryptococcus neoformans requires a secreted fungal metalloprotease. MBio. 2014;5:1–13. doi: 10.1128/mBio.01101-14. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 79.Xu C.Y., Zhu H.M., Wu J.H., Wen H., Liu C.J. Increased permeability of blood-brain barrier is mediated by serine protease during Cryptococcus meningitis. J. Int. Med. Res. 2012;42:85–92. doi: 10.1177/0300060513504365. [DOI] [PubMed] [Google Scholar]
- 80.Pombejra N.S., Jamklang M., Uhrig J.P., Vu K., Gelli A. The structure-function analysis of the Mpr1 metalloprotease determinants of activity during migration of fungal cells across the blood-brain barrier. PLoS ONE. 2018;13:e0203020. doi: 10.1371/journal.pone.0203020. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 81.Vu K., Garcia J.A., Gelli A. Cryptococcal meningitis and anti-virulence therapeutic strategies. Front. Microbiol. 2019;10:1–7. doi: 10.3389/fmicb.2019.00353. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 82.Clarke S.C., Dumesic P.A., Homer C.M., O’Donoghue A.J., La Greca F., Pallova L., Majer P., Madhani H.D., Craik C.S. Integrated Activity and Genetic Profiling of Secreted Peptidases in Cryptococcus neoformans Reveals an Aspartyl Peptidase Required for Low pH Survival and Virulence. PLoS Pathog. 2016;12:e1006051. doi: 10.1371/journal.ppat.1006051. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 83.Creemers J.W.M., Siezen R.J., Roebroek A.J.M., Ayoubi T.A.Y., Huylebroeck D., Van de Ven W.J.M. Modulation of furin-mediated proprotein processing activity by site-directed mutagenesis. J. Biol. Chem. 1993;268:21826–21834. doi: 10.1016/S0021-9258(20)80616-4. [DOI] [PubMed] [Google Scholar]
- 84.Cieplik M., Klenk H.W.G. Identification and characterisation of spodoptera frugiperda furin: A thermostable subtilisin-like endopeptidase. Biol. Chem. 1998;379:1433–1440. doi: 10.1515/bchm.1998.379.12.1433. [DOI] [PubMed] [Google Scholar]
- 85.Solovyeva N.I., Gureeva T.A., Timoshenko O.S., Moskvitina T.A., Kugaevskaya E.V. Furin as Proprotein Convertase and Its Role in Normal and Pathological Biological Processes. Biomed. Khim. 2016;11:609–621. doi: 10.18097/PBMC20166206609. [DOI] [PubMed] [Google Scholar]
- 86.Meng T., Cao H., Zhang H., Kang Z., Xu D., Gong H., Wang J., Li Z., Cui X., Xu H., et al. The insert sequence in SARS-CoV-2 enhances spike protein cleavage by TMPRSS. bioRxiv. 2020:1–36. doi: 10.1101/2020.02.08.926006. [DOI] [Google Scholar]
- 87.Thunders M., Delahunt B. Gene of the month: TMPRSS2 (transmembrane serine protease 2) J. Clin. Pathol. 2020;73:773–776. doi: 10.1136/jclinpath-2020-206987. [DOI] [PubMed] [Google Scholar]
- 88.Sonawane K.D., Barale S.S., Dhanavade M.J., Waghmare S.R., Nadaf N.H., Kamble S.A., Mohammed A.A., Makandar A.M., Fandilolu P.M., Dound A.S., et al. Structural insights and inhibition mechanism of TMPRSS2 by experimentally known inhibitors Camostat mesylate, Nafamostat and Bromhexine hydrochloride to control SARS-coronavirus-2: A molecular modeling approach. Inform. Med. Unlocked. 2021;24:1–15. doi: 10.1016/j.imu.2021.100597. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 89.Belouzard S., Chu V.C., Whittaker G.R. Activation of the SARS coronavirus spike protein via sequential proteolytic cleavage at two distinct sites. Proc. Natl. Acad. Sci. USA. 2009;106:5871–5876. doi: 10.1073/pnas.0809524106. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 90.Levitz S.M., Harrison T.S., Tabuni A., Liu X. Chloroquine induces human mononuclear phagocytes to inhibit and kill Cryptococcus neoformans by a mechanism independent of iron deprivation. J. Clin. Investig. 1997;100:1640–1646. doi: 10.1172/JCI119688. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 91.van Weert A.W., Geuze H.J., Groothuis B., Stoorvogel W. Primaquine interferes with membrane recycling from endosomes to the plasma membrane through a direct interaction with endosomes which does not involve neutralisation of endosomal pH nor osmotic swelling of endosomes. Eur. J. Cell Biol. 2000;79:394–399. doi: 10.1078/0171-9335-00062. [DOI] [PubMed] [Google Scholar]
- 92.Seglen P.O. Inhibitors of lysosomal function. Methods Enzymol. 1983;96:737–764. doi: 10.1016/s0076-6879(83)96063-9. [DOI] [PubMed] [Google Scholar]
- 93.Geary T.G., Jensen J.B., Ginsburg H. Uptake of [3H] chloroquine by drug-sensitive and -resistant strains of the human malaria parasite Plasmodium falciparum. Biochem. Pharmacol. 1986;35:3805–3812. doi: 10.1016/0006-2952(86)90668-4. [DOI] [PubMed] [Google Scholar]
- 94.Newman S.L., Gootee L., Brunner G., Deepe G.S. Chloroquine induces human macrophage killing of Histoplasma capsulatum by limiting the availability of intracellular iron and is therapeutic in a murine model of histoplasmosis. J. Clin. Investig. 1994;93:1422–1429. doi: 10.1172/JCI117119. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 95.López-Otín C., Bond J.S. Proteases: Multifunctional enzymes in life and disease. J. Biol. Chem. 2008;283:30433–30437. doi: 10.1074/jbc.R800035200. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 96.Blume C., Jackson C.L., Spalluto C.M., Legebeke J., Nazlamova L., Conforti F., Perotin J.M., Frank M., Butler J., Crispin M., et al. A novel ACE2 isoform is expressed in human respiratory epithelia and is upregulated in response to interferons and RNA respiratory virus infection. Nat. Genet. 2021;53:205–214. doi: 10.1038/s41588-020-00759-x. [DOI] [PubMed] [Google Scholar]
- 97.Chandran K., Sullivan N.J., Felbor U., Whelan S.P., Cunningham J.M. Endosomal proteolysis of the Ebola virus glycoprotein is necessary for infection. Science. 2005;308:1643–1645. doi: 10.1126/science.1110656. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 98.Barrientos L.G., Rollin P.E. Release of cellular proteases into the acidic extracellular milieu exacerbates Ebola virus-induced cell damage. Virology. 2007;358:1–9. doi: 10.1016/j.virol.2006.08.018. [DOI] [PubMed] [Google Scholar]
- 99.Powers J.C., Asgian J.L., Ekici O.D., James K.E. Irreversible inhibitors of serine, cysteine, and threonine proteases. Chem. Rev. 2002;102:4639–4750. doi: 10.1021/cr010182v. [DOI] [PubMed] [Google Scholar]
- 100.Otto H.H., Schirmeister T. Cysteine Proteases and Their Inhibitors. Chem. Rev. 1997;97:133–172. doi: 10.1021/cr950025u. [DOI] [PubMed] [Google Scholar]
- 101.Kawase M., Shirato K., van der Hoek L., Taguchi F., Matsuyama S. Simultaneous Treatment of Human Bronchial Epithelial Cells with Serine and Cysteine Protease Inhibitors Prevents Severe Acute Respiratory Syndrome Coronavirus Entry. J. Virol. 2012;86:6537–6545. doi: 10.1128/JVI.00094-12. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 102.Hoffmann M., Kleine-Weber H., Schroeder S., Krüger N., Herrler T., Erichsen S., Erichsen S., Schiergens T.S., Herrler G., Wu N.H., et al. SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor. Cell. 2020;181:271–280.e8. doi: 10.1016/j.cell.2020.02.052. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 103.Djomkam A.L.Z., Olwal C.O., Sala T.B., Paemka L. Commentary: SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor. Front. Oncol. 2020;10:e1448. doi: 10.3389/fonc.2020.01448. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 104.Kim J.C., Spence R.A., Currier P.F., Lu X., Denison M.R. Coronavirus protein processing and RNA synthesis is inhibited by the cysteine proteinase inhibitor E64d. Virology. 1995;208:1–8. doi: 10.1006/viro.1995.1123. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 105.Lv Z., Chu Y., Wang Y. HIV protease inhibitors: A review of molecular selectivity and toxicity. HIV/AIDS. 2015;7:95–104. doi: 10.2147/HIV.S79956. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 106.Pfizer Inc. [(accessed on 7 September 2021)]. Available online: https://www.pfizer.com/news/press-release/press-release-detail/pfizer-initiates-phase-1-study-novel-oral-antiviral.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
The data presented in this study are available in the article.