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. 2021 Nov 3;16(11):e0259705. doi: 10.1371/journal.pone.0259705

Correction: Identifying key determinants and dynamics of SARS-CoV-2/ACE2 tight interaction

Van A Ngo, Ramesh K Jha
PMCID: PMC8565735  PMID: 34731214

Figs 1, 3, and 4 are incorrect; the publisher apologizes for the errors. The authors have provided corrected versions here.

Fig 1.

Fig 1

(A) Sequence alignment of receptor binding domains (RBD) of SARS-CoV and SARS-CoV-2. The residues underlined are mutations found in the RBDs. Any residue numbers referred in the text are positions in this sequence alignment. (B) X-ray structures of RBD1 of SARS-CoV (PDB: 2AJF) and RBD2 of SARS-CoV-2 (PDB: 6M0J), respectively, bound to human receptor angiotensin-converting enzyme 2 (ACE2). (C) MD simulation setup for RBD1-ACE2 and RBD2-ACE2 complexes.

Fig 3.

Fig 3

(A) Free-energy profiles computed as a function of the distance between the centers of mass of the RBDs and ACE2 using AMBER and C36 FFs. (B) Snapshots showing an initial configuration of RBD1-ACE complex and its configuration at 500 ns from the simulations using C36 FF. This 500 ns configuration was reproducible and showed in 3 out of 8 replicates (C) Distribution of the distance d between the Cαs of L486 of RBD1 and L79 of ACE2 and compared with d of F486-L79 in RBD2-ACE2.

Fig 4.

Fig 4

(A) Free-energy profiles computed from US simulations as function of RRBD-ACE2 using C36-FF. (B) Three-dimension distributions of the stable pairs (refer Fig 2) as function of the biasing distance between the centers of mass of RBD2 and ACE2. (C) A snapshot during the Umbrella simulations using RRBD-ACE2 = 70 Å. Residue A475 in RBD2 is located right behind F486.

Reference

  • 1.Ngo VA, Jha RK (2021) Identifying key determinants and dynamics of SARS-CoV-2/ACE2 tight interaction. PLoS ONE 16(9): e0257905. 10.1371/journal.pone.0257905 [DOI] [PMC free article] [PubMed] [Google Scholar]

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