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. 2021 Feb 23;6(1):e00030-21. doi: 10.1128/mSystems.00030-21

TABLE 1.

Common SNP and AAV mutations occurring in SARS CoV-2 genomesa

CDS Point
mutation
Position Frequency Amino
acid-R
Variant Position Frequency
5′UTR C→T 67 45
Nsp2 C→T 885 29 T I 85 31
Nsp2 C→T 2863 44
Nsp3/PL-PRO T→C 5852 238 S P 1103 238
Nsp4 C→T 8608 88
Nsp6 G→T 10909 21 L F 37 21
Nsp8 T→C 12299 238
Nsp12 (RdRp) C→T 14234 44 P L 324 46
Nsp13 (Hel) C→T 17573 63 P L 409 64
Nsp13 (Hel) A→G 17684 63 Y C 446 64
Nsp13 (Hel) C→T 17886 68
S A→G 23232 43 D G 614 45
Orf3a G→T 25392 32 Q H 57 34
Orf8 T→C 27973 88 L S 84 89
a

CDS, coding sequence; Amino acid-R, amino acid residue.