Abstract
The factors that trigger human puberty are among the central mysteries of reproductive biology. Several approaches, including mutational analysis of candidate genes, large-scale genome-wide association studies, whole exome sequencing, and whole genome sequencing have been performed in attempts to identify novel genetic factors that modulate the human hypothalamic–pituitary–gonadal axis to result in premature sexual development. Genetic abnormalities involving excitatory and inhibitory pathways regulating gonadotropin-releasing hormone secretion, represented by the kisspeptin (KISS1 and KISS1R) and makorin ring finger 3 (MKRN3) systems, respectively, have been associated with sporadic and familial cases of central precocious puberty (CPP). More recently, paternally inherited genetic defects of DLK1 were identified in four families with nonsyndromic CPP and a metabolic phenotype. DLK1 encodes a transmembrane protein that is important for adipose tissue homeostasis and neurogenesis and is located in the imprinted chromosome 14q32 region associated with Temple syndrome. In this review, we highlight the clinical and genetic features of patients with CPP caused by DLK1 mutations and explore the involvement of Notch signaling and DLK1 in the control of pubertal onset.
Keywords: central precocious puberty, DLK1, genetics, Notch signaling, kisspeptin
Puberty is a complex developmental stage characterized by profound physical and psychosocial changes, ultimately resulting in the achievement of adult height, gonadal maturation, and reproductive capacity. In humans, puberty is initiated through activation of the hypothalamic–pituitary–gonadal (HPG) axis, marked by an increase in pulsatile gonadotropin-releasing hormone (GnRH) release, which in turn leads to pituitary secretion of luteinizing (LH) and follicle-stimulating hormone (FSH), and subsequent activation of the gonads.1,2
The HPG axis is active in the embryonic and early postnatal stages of life, and then becomes dormant during childhood. The reactivation of the HPG axis after this quiescent period culminates with the development of the clinical features of puberty. Early maturation of the HPG axis, resulting in pulsatile secretion of GnRH and subsequent activation of the gonads, causes GnRH dependent or central precocious puberty (CPP).1,2 Clinically, CPP is characterized by breast development (thelarche) prior to age 8 years in girls or testicular enlargement prior to age 9 years in boys.
The exact mechanisms underlying the reinstatement of pulsatile GnRH secretion are not completely known, but it is thought that a conjunction of factors contributeto the initiation of puberty. While metabolic and environmental factors are important regulators of pubertal development, evidence has also supported a genetic influence in the determination of pubertal timing.3,4 Understanding the causes of precocious puberty is important as early age at menarche has been linked with increased risk of cardiovascular disease, metabolic syndrome, and cancer.5–7 Although mutations involving kisspeptin and its receptor have been identified in association with CPP, other rarevariants ingenes implicatedin the regulatorycontrol of GnRH secretion, such as TAC3, TACR3, LIN28B, GABRA1, and NPY, have been difficult to link with CPP, as unaffected family members may also carry the variant, or functional studies failed to show altered biological activity of the mutant proteins.8–10
In 2013, paternally inherited genetic defects in the makorin RING finger protein 3 (MKRN3) gene were associated with familial CPP in 5 of 15 families studied by whole exome sequencing.11 An increasing number of additional mutations in MKRN3 have been successively described in association with familial and sporadic CPP, making MKRN3 defects the most common genetic etiology of CPP identified to date, currently accounting for up to 46% of familial cases and approximately 4% of sporadic cases.12–15
More recently, loss-of-function mutations in the maternally imprinted Delta-like homolog 1 (DLK1) gene were identified as the cause of premature sexual development in four families with several members affected by CPP and metabolic changes.16,17
Interestingly, MKRN3 and DLK1 are both located in chromosomal regions associated with genetic syndromes such as Prader-Willi (chromosome 15) and Temple syndromes (TS: chromosome 14), respectively. Moreover, common single nucleotide polymorphisms (SNPs) in MKRN3 and DLK1 have been associated with the timing of menarche, when paternally inherited.7,18
In this review, we highlight clinical and genetic features of patients with CPP caused by DLK1 mutations and explore the involvement of Notch signaling and DLK1 in the control of pubertal onset.
Loss-of-Function Mutations in DLK1 as a Cause of Familial CPP
The first association between a defect in DLK1 and CPP was reported in 2017, following linkage analysis and whole genome sequencing in a Brazilian family with five female patients with CPP.16 Using this approach, Dauber et al16 identified an approximately 14 kb heterozygous deletion, including the first exon of DLK1 and its translational start site (Fig. 1a). All affected patients demonstrated undetectable DLK1 serum levels, suggesting a complete lack of DLK1 protein in these individuals.16
More recently, Gomes et al17 performed whole exome sequencing in two sisters with precocious menarche associated with polycystic ovarian syndrome (PCOS) and automated sequencingofthe coding regionof DLK1 in 30 unrelated patients with familial CPP. In this study, three distinct loss-of-function mutations of DLK1 (p.Gly199Alafs*11, p.Val271Cysfs*14, p. Pro160Leufs*50) were identified in five adult women from three unrelated families with CPP (Fig. 1a). All of these frameshift mutations are located in the extracellular domain of DLK1, a region containing six epidermal growth factor (EGF)-like repeats that is key for inhibition of Notch activity (Fig. 1b).17,19 Moreover, since these are frameshift mutations, the proteins encoded by these mutant DLK1 genes are likely not expressed due to increased RNA decay or increased protein degradation, as suggested by the absence of detectable serum DLK1 in these individuals.17
Segregation analysis in all four families demonstrated an inheritance pattern of a paternally expressed imprinted gene consistent with the known imprinting of DLK1.
While these reports suggest a potential role of DLK1 in pubertal timing, the prevalence of DLK1 mutations in patients with CPP is not completely known but is suggested to be low.16–18 Grandone et al12 did not find any rare variants in the coding region of DLK1 in a cohort of 60 girls with idiopathic CPP (including 23 familial cases) screened by automated sequencing. It is possible that regulatory elements or large intragenic deletions in DLK1, which would not be identified by this study, could cause CPP12; however, these negative findings suggest at least that loss-of-function mutations in DLK1 are not as common as MKRN3 mutations as a cause of CPP.
Interestingly, missense variants in other Notch signaling pathway components (specifically, in JAG1 and NOTCH1) have been identified in two patients with normosmic hypogonadotropic hypogonadism.20 These variants were predicted to be deleterious by in silico programs, and the available pedigree analyses did not indicate that these were polymorphisms. In addition, Giannakopoulos et al21 reported the occurrence of CPP in a boy diagnosed with a 22q13 deletion or Phelan-McDermid syndrome, who is also a carrier of a duplication of the 9q34.3 chromosomal region that included the NOTCH1 gene. Although pubertaldisorders were originallythought to beassociatedwith Phelan-McDermid syndrome,22 many patients do not manifest an abnormal pubertal phenotype, and recent genome association studies do not support an association between timing of menarche and the 22q13 chromosomal region.21 Thus, it is possible that the NOTCH1 gene duplication might have contributed to early pubertal initiation in this patient. Variants in the Notch signaling components that have been linked to pubertal disorders to date are summarized in Table 1.
Table 1.
Variant | Reference | |||||||
---|---|---|---|---|---|---|---|---|
Gene (chromosome locus) | Nucleotide change | Protein change | Protein domain | Phenotype | Segregation | In silico prediction | No. of affected patients (index)/no. of total probands | |
DLK1 (14q32) | ~14 kb deletion, including exon 1 | Truncated protein | – | CPP, overweight/obesity, glucose intolerance/type 2 DM, hypercholesterolemia | Sister and 2 paternal cousins HET, affected; Father HET, unaffected; Paternal grandmother HET, affected | – | – | Dauber et al16 |
479_479delC | Pro160Leufs*50 | EGF-like 4 | CPP, glucose intolerance, hypercholesterolemia | Paternal aunt HET, affected; Father affected, DNA not available | – | 1/31 | Gomes et al17 | |
594_594delC | Gly199Alafs*11 | EGF-like 5 | CPP, PCOS, infertility, early-onset type 2 DM, hepatic steatosis | Father HET, affected; Mother, paternal aunt and younger brother WT, unaffected; Sister HET, affected | – | 1/31 | Gomes et al17 | |
810_810delT | Val271Cysfs*14 | Juxta membrane | CPP, severe short stature | Father, and two paternal aunts affected, DNA not available; Son HET, unaffected (4 y old); Brother HET, affected | – | 1/31 | Gomes et al17 | |
NOTCH1 (9q34) | 2333C > T | Thr778Ile | EGF-like 20 | nHH | Mother WT, unaffected | Deleterious ≥ 2 prediction programs | 1/48 | Quaynor et al20 |
25 kb duplication | – | – | CPP, hypotonia, developmental delay in motor, cognitive and communication skills, fleshy hands, minor dysmorphic features | N/A | – | – | Giannakopoulos et al21 | |
JAG1 (20p12) | 323A >T | Asn108Ile | Near DSL domain (EC) | nHH | Father WT, unaffected; Sister WT, unaffected; Sister HET, nHH | Deleterious ≥ 2 prediction programs | 1/48 | Quaynor et al20 |
Abbreviations: CPP, central precocious puberty; DM, diabetes mellitus; DSL, Delta–Serrate–Lag2 domain; EC, extracellular; HET, heterozygous; N/A, not available; nHH, normosmic hypogonadotropic hypogonadism; PCOS, polycystic ovarian syndrome; WT, wild type.
Clinical Phenotypes Associated with DLK1 Mutations
All patients with CPP due to loss-of-function mutations in DLK1 presented with clinical and hormonal features consistent with the diagnosis of CPP, including early pubertal signs, accelerated linear growth, advanced bone age, and elevated basal or stimulated LH levels. The median age of pubertal onset was 5.5 years in girls (ranging from 4.6 to 7.0 years).16,17 Short stature was reported in untreated or undertreated patients with familial early menarche or CPP due to DLK1 mutations; however, the impact of absent or inadequate treatment on their final height appeared to be more severe than usually reported in untreated patients with idiopathic CPP from both sexes.17 Metabolic alterations such as early-onset glucose intolerance or type 2 diabetes mellitus, overweight or obesity, hypercholesterolemia, and/or PCOS were frequently observed in the affected patients.17
Although alterations in pubertal timing have not been reported for Dlk1 deletion or overexpression mouse models,23–25 it is not clear if they were carefully phenotyped for age of puberty onset. Dlk1 global knockout mice displayed growth retardation, obesity, blepharophimosis, skeletal malformation, and increased serum lipid metabolites, overlapping with the phenotype associated with human maternal uniparental disomy of chromosome 14 or TS.25
Since its first description in 1991,26 more than 50 cases of TS have been published, most of which have maternal uniparental disomy, but loss of methylation of the intergenic differentially methylated region (IG-DMR), copy number changes, and mutation of expressed coding genes have also been reported.27 Interestingly, the study of rare TS patients with copy number changes confined the region of interest to a 108-kb paternal deletion involving DLK1 and GTL2/MEG3, and the IG-DMR (Fig. 1c). The two patients with this deletion had many features of TS, but stature was more severely affected in a third reported case with a larger deletion (411 kb), which included RTL1 (but not DIO3).27 TS is characterized by intrauterine growth restriction, commonly followed by hypotonia, reduced skeletal length with relative macrocephaly, and perinatal failure to thrive.26,27 Adults with TS have reduced final height, but frequently display high body mass index with onset in late childhood.23 Metabolic diseases such as type 2 diabetes and dyslipidemias are present in 11 and 23% of the patients, respectively. The majority (76–90%) of TS cases in both males and females manifest early puberty.28,29 Additional dysmorphic characteristics are also associated with TS, including a characteristic face with a broad nose and high forehead, and small hands and feet.23 Except for precocious puberty, short stature, and metabolic changes, no other clinical features of TS were reported in patients with CPP and DLK1 mutations.
DLK1 Gene, Protein Structure, and Expression
The DLK1 gene was described simultaneously by three independent groups in 1993,30–32 and, consequently, it is also referred to as fetal antigen 1 and preadipocyte factor 1.33 DLK1 is located on human chromosome 14q32.2 (chromosome 12qF1 in mouse) in a region containing a cluster of imprinted genes (DLK1-DIO3 domain; Fig. 1c) associated with two different developmental disorders.23 Mutations or loss of expression of the maternal chromosomal domain leads to Kagami-Ogata syndrome, while TS results from mutations or loss of expression of the paternally expressed genes, including DLK1.23 DLK1 parental origin-specific expression is conferred through silencing of the DLK1 maternal allele, mainly due to DNA methylation.34 Important epigenetically marked regulatory regions have been mapped in the DLK1-DIO3 domain, including the promoter CpG islands of BEGAIN 1B, DLK1, and DIO3, which remain unmethylated in most cells, and four differentially methylated CpG regions (DMR; Fig. 1c).23 Among these cytosine-rich DNA regions are an intragenic DMR within DLK1 whose regulatory function is unknown, an IG-DMR that is located approximately 15 kb upstream of the MEG3 promoter, a DMR in the MEG3 promoter, and another within the RIAN-C/D SnoRNA cluster. Except for the RIAN C/D cluster that is maternally methylated, the other three DMRs are methylated on the paternally inherited chromosome (Fig. 1c).23,35,36 Several lines of evidence in both mice and humans have suggested that the IG-DMR is the imprinting center region at the DLK1-DIO3 cluster, which is normally methylated only on the paternal allele, and acts to direct the methylation status of the MEG3 promoter DMR, which then controls gene expression across the entire cluster.23,37,38
The DLK1 gene has five exons (transcript length: 4657bp—ENST00000341267.9; Fig. 1a) in humans (six exons in mouse) and encodes for a transmembrane (TM) protein belonging to the EGF-like family of proteins, which also includes Notch receptors and Delta and Serrate ligands (discussed further later). Like other members of this family, DLK1 is involved in regulating differentiation and cell fate determination, playing a role in many differentiation processes, notably in osteogenesis and adipogenesis, but also in hematopoiesis and differentiation of neuroendocrine cells and hepatocytes.39
The DLK1 protein structure is composed of an extracellular region (EC) with six EGF-like repeats and a tumor necrosis factor α–converting enzyme (TACE) protease-sensitive target sequence, a TM domain, and a short intracellular region (Fig. 1b).39 TACE-mediated cleavage generates a soluble form of DLK1.40 Alternative DLK1 splicing can also result in membrane-tethered isoforms that have been described in several mammalian species and whose biological activity is not fully understood.41,42
DLK1 expression is widely distributed during mouse embryonic development, but in adults, its expression becomes restricted to (neuro) endocrine tissues including the pituitary gland, adrenal glands, pancreas, monoaminergic neurons in the central nervous system, testes, prostate, and ovaries.31 Additionally, it has been shown that DLK1 is also expressed postnatally in several hypothalamic nuclei, including the mediobasal hypothalamus, a key site for the control of GnRH secretion through the kisspeptin neurons.43 Moreover, DLK1 expression has been shown in tumors with neuroendocrine features, such as neuroblastoma, pheochromocytoma, and a subset of small cell lung cancer cell lines.30
DLK1 and the Notch Signaling Pathway
The Notch signaling pathway is one of the most evolutionarily conserved signaling cascades across species that operates in a context-dependent way, promoting cell proliferation and apoptosis and activating specific differentiation programs during embryonic development.44,45 In adult tissues, Notch-mediated signals are important regulators of tissue homeostasis and stem cell maintenance.45 Given its widespread use in multiple cellular processes and tissues, aberrations resulting in gain or loss of Notch signaling components and functions have been linked to a variety of disorders, where Notch can act either as an activator or as a repressor.46
In mammals, four Notch receptors (Notch 1–4) and five different activating canonical ligands (Dll1, Dll3, Dll4, Jagged1, and Jagged2) characterized by the presence of a DSL (Delta, Serrate and Lag2) domain and two noncanonical ligands (Dlk1 and 2) have been described.39,40,46,47 Notch receptors are TM proteins showing high structure homology (especially Notch1 and Notch2) and displaying both common and unique functions.46 During maturation in the Golgi and trafficking tothe cell surface, the Notch receptors are processed by a furin-like protease to produce a heterodimeric molecule composed of an N-terminal EC, a TM domain, and a C-terminal intracellular (IC) domain.45 The EC portion of Notch receptors contains a series (29–36) of EGF-like repeats, some of which are crucial in mediating ligand interactions and responses.48 Within the EC domain, the EGF-like repeats are followed by three cysteinerich LIN12 repeats that prevent ligand-independent activation.46 The IC portion of the Notch receptors is composed of a protein-binding RBPJk-associated molecule, seven ankyrin repeats, and less conserved regions including a C-terminal region rich in proline, glutamate, serine, and threonine (PEST domain), which regulates protein stability and degradation as it contains the substrate site that is recognized by E3 ubiquitin ligases.44,46 Among family members, Notch1 and Notch2 are the most widely expressed receptors, being present in many tissues during the developmental stage, as well as in adults, while Notch3 is found mainly in vascular smooth muscle and pericytes, and Notch4 is most highly expressed in endothelium.46
Canonical Notch ligands are cell surface proteins that share a common structural arrangement in their extracellular domains comprising an N-terminal DSL domain, a specialized tandem EGF-repeat domain called the DOS domain, and a variable number of EGF-like repeats (both calcium binding and non–calcium binding).45 The mammalian DSL ligands are classified as either delta-like (Dll1, Dll3, and Dll4) or Serrate (Jagged)-like (Jagged1 and Jagged2), based on homology to their Drosophila prototypes Delta and Serrate.49
While the Delta and Serrate family members represent the classical Notch ligands for activating Notch signaling through cell–cell interactions, a growing repertoire of noncanonical ligands, including Dlk1 and Dlk2, has been reported to interact with Notch receptors.19,39,45 Dlk1 and Dlk2 are both TM proteins, whose structure and expression pattern are closely related to those of the canonical DLL ligands, except that the DSL domain is absent.50 The high degree of homology between the proteins Dlk1 and Dlk2, particularly in their EGF-like ECs, suggests that Dlk2 might compensate for the absence of Dlk1.39 Dlk2 expression is detected in several mouse embryonic and adult tissues and cell lines, but shows a different pattern of expression from Dlk1.39 Dlk2 expression is absent from liver during the first days of life, when Dlk1 expression is elevated, but increases around the 16th day of life, when Dlk1 expression starts to decline.39
The most extensively characterized Notch signaling pathway triggered in response to Notch ligands is known as canonical Notch signaling. In this cascade, a Notch receptor on a receiving cell interacts extracellularly with a canonical Notch ligand, leading to a conformational change of the receptor and subsequently initiating a series of proteolytic cleavages of the receptor. ADAM-mediated extracellular cleavage releases the TM-IC regions from the EC portion of the receptor, generating a short-lived membrane-bound form of Notch that is rapidly further cleaved in the membrane by the γ-secretase complex, releasing Notch IC domain (NICD) from the membrane and allowing its translocation to the nucleus (Fig. 2a).44,45,47,51 Once in the nucleus, the NICD functions as a transcriptional activator, interacting with RBPJk and other coactivators of the Mastermind-like family, as well as the histone acetyl transferase p300, to initiate transcription of Notch target genes (Fig. 2a).47,52 Major Notch target genes include the basic helix-loop-helix class of transcription factors, such as HES1 and HEY1, which act as repressors of transcription, playing critical roles in developmental processes.46,47 Even though functional differences have been ascribed to the four Notch receptors, activation with either DLL or Jagged family ligands leads to the activation of the same canonical signaling pathway.49
Noncanonical Notch signaling differs from canonical signaling in that it can be initiated by a noncanonical ligand, or may not require cleavage of the Notch receptor.53 Alternatively, in some forms of noncanonical signaling, there is no involvement of RBPJk, which may reflect interactions with other signaling pathways upstream of the Notch ICD–RBPJk interaction.53 Although the function of noncanonical ligands is still poorly understood, it has been shown that noncanonical ligands like Dlk1 can bind to Notch receptors, inhibiting Notch signaling by acting as a dominant negative protein.40 Notch signaling can be regulated in different ways, including competition between noncanonical and canonical ligands for receptor binding sites39 and through effects of posttranslational processing on Notch receptor activity during its synthesis and secretion, ligand-dependent activation at the surface, endocytic trafficking, and degradation.39,52
Kisspeptin as a Potential Link between DLK1 and HPG Axis
It is known that the HPG axis is the most critical modulator of reproductive function. Effects of genetic or environmental insults to the HPG axis during developmental windows can persist throughout childhood and into adulthood, affecting timing of puberty and fertility.54 In the hypothalamus, multiple regions develop at different times and are under the control of several signaling pathways and transcription factors required for patterning and maturation.54 Two different hypothalamic nuclei, the arcuate nucleus (ARC) and anteroventral periventricular nucleus (AVPV), are of particular interest in regard to reproductive function due to the presence of kisspeptin neurons. Kisspeptin is an excitatory neuropeptide that was identified as a permissive factor in puberty onset by the discovery of patients with hypogonadotropic hypogonadism and loss-of-function mutations in the KISS1 receptor (KISS1R).55,56 It has been shown that an appropriate level of active RBPJk-dependent Notch signaling is required for progenitor cell maintenance and is critical for the formation of kisspeptin neurons in both ARC and AVPV.57 Interestingly, the importance of the Notch signaling in the development of kisspeptin neurons is not restricted to early neurogenesis but is also required in adulthood.57 As a negative regulator of Notch signaling, Dlk1 has been involved in the inhibition of several differentiation processes, including adipogenesis and osteogenesis.30,32,39 The exact mechanism by which DLK1 regulates pubertal timing is not yet understood; however, it is quite feasible that DLK1 could play a role in the regulation of neurogenesis within the hypothalamus, indirectly interfering with kisspeptin neuron formation, maturation, and/or secretion of kisspeptin through the activation or inhibition of Notch target genes (Fig. 2b). Indeed, considering the importance of the Notch signaling pathway for neurogenesis and development of the hypothalamus, particularly the “reproductive center,” it would be reasonable to speculate that this pathway could potentially represent a link between the three most relevant genes associated with CPP: KISS1, MKRN3, and DLK1. In this scenario, DLK1 would titrate the appropriate level of Notch signaling essential for the differentiation of KISS1-expressing neurons by competing with the canonical ligands for Notch receptor binding, and MKRN3, acting as an E3 ubiquitin ligase, might be speculated to regulate the amount of Notch ligands and receptors available at the cell surface.
Conclusion
Pubertal onset is thought to result from a decrease in factors that inhibit the release of GnRH combined with an increase in stimulatory factors. However, the main drivers that trigger the release of the puberty “brake” at the end of the juvenile period remains a mystery. Recently, studies of patients with idiopathic familial CPP uncovered the role of DLK1 in puberty initiation. DLK1 is known to be a negative regulator of Notch signaling, a well-conserved pathway involved in neurogenesis and other differentiation processes. Although animal studies have suggested that Notch signaling is relevant for the development of kisspeptin neurons in the hypothalamus, how DLK1 interacts with kisspeptin and other major players of puberty such as GnRH, MKRN3, and other excitatory and inhibitory neurotransmitters is still a subject for further study by scientists interested in the reproductive axis.
Acknowledgments
This work was supported by NIH R01 HD082314 (to U.B. K.) and Coordenação de Aperfeiçoamento de Ensino Superior-CAPES Grant 88881.170070/2018–01 (to D.B.M.).
Footnotes
Conflict of Interest
The authors have nothing to disclose.
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