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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2021 Oct 29;77(Pt 11):1185–1189. doi: 10.1107/S2056989021011166

Crystal structures of Zn(cyclam)I2 (second monoclinic polymorph) and Zn(cyclam)I(I3)

Sergey P Gavrish a, Sergiu Shova b, Yaroslaw D Lampeka a,*
PMCID: PMC8587993  PMID: 34868660

The crystal of the first title compound contains five-coordinate [Zn(L)I]+ (L = cyclam) cations and non-coordinated iodide anions; the extended structure is consolidated by N—H⋯I and N—H⋯(I,I) hydrogen bonds. The crystals of the second title compound consist of chains of [Zn(L)I]+ units and triiodide counter-ions but without significant hydrogen-bonding inter­actions.

Keywords: crystal structure, polymorph, cyclam, zinc, iodide, triiodide, hydrogen bonds

Abstract

The asymmetric unit of the first title compound iodido­(1,4,8,11-tetra­aza­cyclo­tetra­decane-κ4 N 1,N 4,N 8,N 11)zinc(II) iodide, [ZnI(C10H24N4)]I, I, consists of the zinc–cyclam macrocyclic cation with one iodide anion coordinated to the metal ion [Zn—I = 2.6619 (5) Å] and the second present as a counter-ion. The asymmetric unit of the second title compound iodido­(1,4,8,11-tetra­aza­cyclo­tetra­decane-κ4 N 1,N 4,N 8,N 11)zinc(II) triiodide, [ZnI(C10H24N4)]I3, II, consists of half of the centrosymmetric macrocyclic cation, in which the ZnII ion coordinated to an iodide anion [Zn—I = 2.766 (2) Å] is disordered over two positions [Zn⋯Zn = 0.810 (3) Å], and of the two halves of the crystallographically non-equivalent, non-coordinated, centrosymmetric triiodide anions. In both compounds, the N,N,N,N-tetra­dentate macrocyclic ligand is present in the most energetically favored trans-III conformation. In the crystals of I, the [Zn(C10H24N4)I]+ cations and the non-coordinated iodide anions are linked by N—H⋯I and bifurcated N—H⋯(I,I) hydrogen bonds, resulting in the formation of two-dimensional networks lying parallel to the (001) and (101) planes. In contrast, the crystals of II are built up from infinite chains of the five-coordinate macrocyclic units arranged along the b-axis direction and perpendicular sheets formed of the triiodide counter-ions without significant hydrogen bonding between them.

Chemical context

The 14-membered tetra­azamacrocycle 1,4,8,11-tetra­aza­cyclo­tetra­decane (C10H24N4, cyclam, L) is one of the most useful and widely studied ligands because of a number of unique properties, such as exceptionally high thermodynamic stability, kinetic inertness and unusual redox properties inherent to its complexes with transition-metal ions (Melson, 1979; Yatsimirskii & Lampeka, 1985). Typically, cyclam coordinates to the metal ion by its four N atoms in a planar manner, leaving two vacant trans binding sites in the coordination sphere for additional ligands, including halide anions as an important class. To date, a number of complexes of [M(L)]2+ cations (M = CuII, NiII, ZnII) with halides X (X = Cl, Br, I) have been reported (Ito et al., 1984; Adam et al., 1991; Porai-Koshits et al., 1994; Chen et al., 1996; Makhaev et al., 1996; Ha, 2017; Horii et al., 2020).

Typically, the compounds under consideration are prepared by the direct reaction of MX 2 salts with L. We were inter­ested in the development of alternative methods of synthesizing zinc(II) iodide compounds by anion exchange, starting from the initially formed acetate or nitrate species. It was found in the course of this investigation that precipitation of Zn(L)I2 from the in situ formed acetate complex by potassium iodide in methanol solution occurs slowly (over several days) and results in the formation of the colorless compound I, the structure of which is different from that described previously (Porai-Koshits et al., 1994). When the metathesis reaction was carried out in aqueous solution, a small amount of the iodide/triiodide salt (compound II) was obtained in the form of intensely colored brown crystals. The lattice parameters for this compound were reported by Heinlein & Tebbe (1985) in an alternate setting of the unit cell (see Database Survey) but no atomic coordinates were established. Here, we report the crystal structures of these two compounds, namely, iodido-(1,4,8,11-tetra­aza­cyclo­tetra­decane-κ4 N 1 N 4 N 8 N 11)zinc(II) iodide, [ZnI(L)]I, I and iodido-(1,4,8,11-tetra­aza­cyclo­tetra­decane-κ4 N 1 N 4 N 8 N 11)zinc(II) triiodide, [ZnI(L)]I3, II. graphic file with name e-77-01185-scheme1.jpg

Structural commentary

The mol­ecular structure of I is shown in Fig. 1. It represents the square-pyramidal macrocyclic [Zn(L)I]+ cation with one iodide anion coordinated in the axial position of the zinc(II) ion, while the second iodide anion acts as a counter-ion.

Figure 1.

Figure 1

View of the mol­ecular structure of I showing the atom-labeling scheme with displacement ellipsoids drawn at the 30% probability level. C-bound H atoms are omitted for clarity. Hydrogen-bonding inter­actions are shown as dashed lines.

Thus, I belongs to a rather limited family of [Zn(L)] compounds in which the ZnII ion is five-coordinated. Other distinct examples are complexes with thiol­ate (Notni et al., 2006) and hexa­cyano­ferrate(3–) (Colacio et al., 2001) axial ligands. In the majority of compounds, the ZnII ion is six-coordinated. Analogously to these complexes, the macrocyclic ligand in I adopts the most energetically favorable trans-III (R,R,S,S) conformation (Bosnich et al., 1965).

The coordination polyhedron of the [Zn(L)I]+ cation in I is characterized by a large deviation [0.4412 (14) Å] of the metal ion from the mean N4 plane of donor atoms toward the coordinated iodide ion and this results in conformational peculiarities, distinguishing it from planar tetra- or hexa-coordinated species. In particular, this deviation results in non-equivalence of the six-membered chelate rings in chair conformations with syn and anti directivity of the NH-hydrogen atoms with respect to the displacement of the metal ion. In the first case, the ring becomes more flattened at the Zn side, and in the second more puckered. Simultaneously, the five-membered rings in I adopt gaucheenvelope conformations (one of the carbon atoms lies almost in the N—Zn—N plane) in contrast to the symmetric gauche conformations in planar structures.

As expected, the bite angles in the five-membered chelate rings in I (ca 82.6°, Table 1) are reduced compared to the typical value of ca 85° in planar structures. At the same time, a considerable decrease in the bite angle occurs only in the ‘anti’ six-membered chelate ring [88.94 (11)° versus ca 95° in planar structures].

Table 1. Selected geometrical parameters (Å, °) of the complex cations.

I   II  
Zn1—N1 2.101 (3) Zn1—N1 2.014 (10)
Zn1—N2 2.121 (3) Zn1—N2 2.014 (10)
Zn1—N3 2.121 (3) Zn1—N1i 2.179 (10)
Zn1—N4 2.110 (3) Zn1—N2i 2.210 (10)
Zn1—I1 2.6619 (5) Zn1—I1 2.766 (2)
N1—Zn1—N4 95.77 (11) N1—Zn1—N2 98.9 (5)
N2—Zn1—N3 88.94 (11) N1i—Zn1—N2i 88.4 (4)
N1—Zn1—N2 82.64 (11) N1i—Zn1—N2 82.9 (5)
N3—Zn1—N4 82.61 (11) N1—Zn1—N2i 82.2 (5)

Symmetry code: (i) −x + {3\over 2}, −y + {3\over 2}, −z + {1\over 2}.

The mol­ecular structure of compound II is shown in Fig. 2. In this case the [Zn(L)] unit is centrosymmetric but the zinc(II) ion is disordered over two positions with site occupancies of 50% constrained by symmetry with a Zn1⋯Zn1i distance of 0.810 (3) Å [symmetry code: (i) −x +  Inline graphic , −y +  Inline graphic , −z +  Inline graphic ]. Two crystallographically non-equivalent, non-coord­inated centrosymmetric triiodide anions serve as counter-ions, with I2 and I4 occupying the inversion centers.

Figure 2.

Figure 2

View of the mol­ecular structure of II showing the atom-labeling scheme with displacement ellipsoids drawn at the 30% probability level. C-bound H atoms are omitted for clarity. Symmetry codes: (i) −x +  Inline graphic , −y +  Inline graphic , −z +  Inline graphic ; (ii) −x +  Inline graphic , y −  Inline graphic , −z +  Inline graphic ; (iii) −x + 2, y, −z + 1; (iv) −x + 1, y, −z + 1.]

The structural characteristics of the [Zn(L)I]+ unit in II are in general agreement with those described above for I, with the deviation of the zinc(II) ion from the mean N4 plane being 0.381 (2) Å. The ‘syn’ and ‘anti’ six-membered chelate rings are characterized by even higher divergences in their bite angles as compared to I (10.5° and 6.8°, respectively, Table 1). The five-membered rings in II are also present in gaucheenvelope conformations. A notable distinction in II is the considerable difference of the Zn—N bond lengths in the ‘syn’ and ‘anti’ six-membered chelate rings [average values = 2.01 (1) and 2.20 (2) Å, respectively], while in I this difference is only 0.015 Å.

Supra­molecular features

The crystals of I have dual lamellar structure. The layers parallel to the ab plane are readily discernible (Fig. 3). They are composed of zigzag chains propagating along the b-axis direction, in which the links between the [Zn(L)I]+ units occur via N—H⋯I hydrogen bonds between the secondary amino groups of the macrocyclic ligands (N1—H1, N2—H2 and N3—H3) as the donors and the non-coordinated I2 anions as the acceptors (Table 2). These chains are linked in the perpendic­ular (a-axis) direction through weak N3—H3⋯ I1 bonds (Fig. 4). At the same time, paired hydrogen-bond contacts involving the coordinated iodide anions I1 and the N4–H4 groups of neighboring macrocycles lead to the formation of another two-dimensional network (Fig. 5). Since the existence of such hydrogen-bonded layers parallel to the (101) plane is not so evident, one of these sheets in Figs. 3 and 4 is highlighted in dark green.

Figure 3.

Figure 3

The packing in I viewed down the b-axis direction. Hydrogen-bonding inter­actions are shown as dashed lines.

Table 2. Hydrogen-bond geometry (Å, °) for I .

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯I2i 0.98 2.82 3.708 (3) 151
N2—H2⋯I2 0.98 2.78 3.634 (3) 146
N3—H3⋯I1ii 0.98 3.20 3.819 (3) 123
N3—H3⋯I2 0.98 3.13 3.897 (3) 137
N4—H4⋯I1iii 0.98 2.86 3.680 (3) 142

Symmetry codes: (i) -x-{\script{1\over 2}}, y-{\script{1\over 2}}, -z+{\script{1\over 2}}; (ii) -x+{\script{1\over 2}}, y+{\script{1\over 2}}, -z+{\script{1\over 2}}; (iii) -x, -y+1, -z.

Figure 4.

Figure 4

The structure of the hydrogen-bonded layer parallel to the ab plane in I. Hydrogen-bonding inter­actions are shown as dashed lines.

Figure 5.

Figure 5

The structure of the hydrogen-bonded layer parallel to the (101) plane in I. Hydrogen-bonding inter­actions are shown as dashed lines.

The disordered [Zn(L)I]+ cations in the crystal of II are arranged in parallel chains running along the b-axis direction (Fig. 6). The peculiarity of this structure is that all of the iodine atoms, both coordinated (I1) and those of the triiodide anions [I3/I2/I3i and I5/I4/I5ii; symmetry codes (i) −x + 2, y, −z + 1; (ii) −x + 1, y, −z + 1] lie strictly in crystallographic planes parallel to the ac plane, thus forming ‘purely iodide’ layers separated by half of the b unit-cell length (Fig. 7). As can be seen, all of the I3—I2—I3 triiodide anions are parallel, as well as the I5—I4—I5 ones, and they form an angle of 71.5 (3)° to each other. The shortest distance between the coordinated iodide and the triiodide anion is 4.803 (3) Å (I1⋯I5), while the shortest distance between triiodide anions is 4.949 (3) Å [I3⋯I3iii; symmetry code: (iii) −x + 1, y, −z + 1]. Surprisingly, there are no hydrogen-bonding inter­actions in the crystal of II so its three-dimensional structure is based on weak ionic and van der Waals inter­actions.

Figure 6.

Figure 6

The arrangement of [Zn(L)I]+ cations along the b-axis direction in II. C-bound H atoms are omitted for clarity.

Figure 7.

Figure 7

The packing in II viewed down the a-axis direction. C-bound H atoms are omitted for clarity.

Database survey

A search of the Cambridge Structural Database (CSD, version 5.40, last update February 2019; Groom et al., 2016) indicated that a number of compounds of the composition [M(L)]X 2 have been characterized structurally. They include complexes of nickel(II) [refcodes TAZDNC01 (Ito et al., 1984); TAZDNC02–08 (Horii et al., 2020); RAPKAX (Ha, 2017); JIZTUH (Adam et al., 1991); JIZTUH01–04 (Horii et al., 2020)], copper(II) [TEGPOK (Chen et al., 1996); TUCQEN (Makhaev et al., 1996)] and zinc(II) [VUSDUI10, HEGNEM and HEGNOW (Porai-Koshits et al., 1994)] cyclam cations with the full series (except for CuLCl2) of halide anions (X = Cl, Br, I).

In the overwhelming majority of cases, these complexes form monoclinic (space group P21/c or P21/n) mol­ecular crystals with the same structural motif: the complex moieties form infinite chains, in which they are joined by the pairs of N—H⋯X hydrogen bonds between the NH group of the macrocycle and the coordinated halide ion. On the other hand, in the case of the nickel(II), two other polymorphs of the iodide salt are known. These are also chain structures; however, one of the iodide anions is not coordinated [CAFHUM (Prasad & McAuley, 1983) and JIZTUH05–08 (Horii et al., 2020)]. The peculiarity, characteristic only of zinc(II) complexes, is that quite similar to the situation observed in II, the metal ion is disordered over two positions. It should also be noted that a degree of pyramidalization of the Zn(N4) chromophore progressively increases on going from Cl to I (the deviation of the ZnII ion from the mean N4 plane is 0.237, 0.322 and 0.385 Å, respectively) and the conformations of the chelate rings and their bite angles demonstrate systematic trends consistent with this variation. The structure of the complex [Zn(L)I]I3 is also mentioned (DEHVOB; Heinlein & Tebbe, 1985), but without atomic coordinates. The reported unit-cell parameters (space group C2/m; a = 19.189, b = 12.615, c = 10.072 Å; β = 120.65°) represent an alternative setting of the I2/m unit cell found here for II: the matrix 0 0 1 / 0 1 0 / −1 0 1 transforms the DEHVOB cell to that of II.

Synthesis and crystallization

All chemicals and solvents used in this work were purchased from Sigma–Aldrich and were used without further purification.

To prepare I, a solution of 48 mg (0.240 mmol) of cyclam in 2 ml of MeOH was added to a solution of 50 mg (0.228 mmol) of Zn(CH3CO2)2·2H2O in 2 ml of MeOH and the mixture was heated at ca 333 K for 10 h. After cooling, a solution of 0.6 g of KI in 4 ml of MeOH was added and the mixture was left at room temperature. After one week, colorless prismatic crystals formed were filtered off, washed with MeOH and dried in air. Yield: 79 mg (67%). Analysis calculated for C10H24N4Zn1I2: C 23.12; H 4.66; N 10.78%. Found: C 22.98; H 4.72; N 10.63%. Single crystals of I in the form of colorless prisms suitable for X-ray diffraction analysis were picked from the sample resulting from the synthesis.

Crystals of II were obtained in an experiment when the precipitation of the product was attempted in aqueous solution. After addition of the solution of 0.5 g of KI in 0.5 ml of H2O to the solution of the nitrate salt of the macrocyclic cation [obtained in situ from 50 mg (0.25 mmol) of cyclam and 75 mg (0.25 mmol) of Zn(NO3)2·6H2O] in 2 ml of H2O, a white precipitate formed (ca 92 mg), which was filtered off and the mother liquor was left exposed to the air. After several days, a small qu­antity of brown crystals of II had formed, which were picked for crystallographic investigation.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3. All of the H atoms in I and II were placed in geometrically idealized positions and constrained to ride on their parent atoms, with C—H = 0.97 Å and N—H = 0.98 Å with Uiso(H) values of 1.2Ueq of the parent atoms.

Table 3. Experimental details.

  I II
Crystal data
Chemical formula [ZnI(C10H24N4)]I [ZnI(C10H24N4)]I3
M r 519.50 773.30
Crystal system, space group Monoclinic, P21/n Monoclinic, I2/m
Temperature (K) 293 293
a, b, c (Å) 8.3837 (3), 13.7570 (4), 14.6478 (5) 10.0629 (12), 12.6263 (12), 16.5133 (16)
β (°) 103.852 (3) 90.921 (10)
V3) 1640.25 (9) 2097.9 (4)
Z 4 4
Radiation type Mo Kα Mo Kα
μ (mm−1) 5.25 7.05
Crystal size (mm) 0.2 × 0.2 × 0.15 0.18 × 0.18 × 0.10
 
Data collection
Diffractometer Xcalibur, Eos Xcalibur, Eos
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2019) Multi-scan (CrysAlis PRO; Rigaku OD, 2019)
T min, T max 0.650, 1.000 0.563, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 10691, 3785, 2982 1931, 1931, 1531
R int 0.031 0.065
(sin θ/λ)max−1) 0.684 0.595
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.033, 0.053, 1.02 0.065, 0.209, 1.02
No. of reflections 3785 1931
No. of parameters 155 100
H-atom treatment H-atom parameters constrained H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.57, −0.83 1.86, −2.21

Computer programs: CrysAlis PRO (Rigaku OD, 2019), SHELXT2018/2 (Sheldrick, 2015a ), SHELXL2018/3 (Sheldrick, 2015b ), Mercury (Macrae et al., 2020) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, II. DOI: 10.1107/S2056989021011166/hb7994sup1.cif

e-77-01185-sup1.cif (491.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989021011166/hb7994Isup2.hkl

e-77-01185-Isup2.hkl (207.7KB, hkl)

Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989021011166/hb7994IIsup3.hkl

e-77-01185-IIsup3.hkl (106.4KB, hkl)

CCDC references: 2115387, 2115388

Additional supporting information: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Crystal data

[ZnI(C10H24N4)]I F(000) = 992
Mr = 519.50 Dx = 2.104 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
a = 8.3837 (3) Å Cell parameters from 3942 reflections
b = 13.7570 (4) Å θ = 2.1–27.3°
c = 14.6478 (5) Å µ = 5.25 mm1
β = 103.852 (3)° T = 293 K
V = 1640.25 (9) Å3 Prism, clear light colourless
Z = 4 0.2 × 0.2 × 0.15 mm

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Data collection

Xcalibur, Eos diffractometer 3785 independent reflections
Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source 2982 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.031
Detector resolution: 16.1593 pixels mm-1 θmax = 29.1°, θmin = 2.1°
ω scans h = −10→10
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2019) k = −17→11
Tmin = 0.650, Tmax = 1.000 l = −18→19
10691 measured reflections

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Refinement

Refinement on F2 Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: full H-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033 w = 1/[σ2(Fo2) + (0.0145P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.053 (Δ/σ)max = 0.001
S = 1.02 Δρmax = 0.57 e Å3
3785 reflections Δρmin = −0.83 e Å3
155 parameters Extinction correction: SHELXL2018/3 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraints Extinction coefficient: 0.00134 (7)
Primary atom site location: structure-invariant direct methods

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
I1 0.16199 (3) 0.40650 (2) 0.15018 (2) 0.03711 (9)
Zn1 0.00746 (5) 0.54540 (3) 0.22192 (3) 0.02665 (12)
N1 −0.2241 (3) 0.48210 (19) 0.2122 (2) 0.0272 (7)
H1 −0.226473 0.423178 0.174250 0.033*
N2 0.0454 (3) 0.5033 (2) 0.36481 (19) 0.0292 (7)
H2 0.003393 0.556139 0.397386 0.035*
N3 0.1933 (3) 0.65217 (19) 0.2632 (2) 0.0282 (7)
H3 0.149659 0.704337 0.295758 0.034*
N4 −0.0687 (3) 0.63817 (19) 0.1048 (2) 0.0288 (7)
H4 −0.054780 0.601213 0.050069 0.035*
C1 −0.2327 (5) 0.4485 (3) 0.3069 (3) 0.0371 (10)
H1A −0.306512 0.393370 0.301155 0.044*
H1B −0.275717 0.500177 0.339202 0.044*
C2 −0.0644 (5) 0.4196 (3) 0.3632 (3) 0.0384 (10)
H2A −0.068776 0.402191 0.426776 0.046*
H2B −0.024607 0.363962 0.334543 0.046*
C3 0.2174 (5) 0.4875 (3) 0.4148 (3) 0.0410 (10)
H3A 0.264794 0.437386 0.382861 0.049*
H3B 0.221722 0.465027 0.478124 0.049*
C4 0.3177 (5) 0.5806 (3) 0.4193 (3) 0.0463 (11)
H4A 0.262635 0.631620 0.445670 0.056*
H4B 0.423918 0.570130 0.462252 0.056*
C5 0.3457 (4) 0.6162 (3) 0.3260 (3) 0.0415 (10)
H5A 0.426638 0.667933 0.337714 0.050*
H5B 0.389197 0.563309 0.295420 0.050*
C6 0.2140 (5) 0.6907 (3) 0.1731 (3) 0.0389 (10)
H6A 0.260339 0.641125 0.139970 0.047*
H6B 0.288015 0.745919 0.183961 0.047*
C7 0.0475 (5) 0.7213 (3) 0.1152 (3) 0.0389 (10)
H7A 0.006315 0.775097 0.145756 0.047*
H7B 0.056870 0.742876 0.053664 0.047*
C8 −0.2429 (4) 0.6695 (3) 0.0832 (3) 0.0365 (9)
H8A −0.267305 0.706063 0.024857 0.044*
H8B −0.259879 0.712074 0.132732 0.044*
C9 −0.3590 (4) 0.5841 (3) 0.0740 (3) 0.0393 (10)
H9A −0.323413 0.534611 0.036061 0.047*
H9B −0.467479 0.605410 0.040333 0.047*
C10 −0.3724 (4) 0.5385 (3) 0.1661 (3) 0.0391 (10)
H10A −0.389967 0.589381 0.208462 0.047*
H10B −0.467193 0.495836 0.154407 0.047*
I2 −0.15695 (4) 0.73451 (2) 0.37919 (2) 0.04638 (10)

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.04629 (18) 0.03129 (16) 0.03725 (17) 0.00582 (11) 0.01687 (13) −0.00334 (11)
Zn1 0.0257 (2) 0.0263 (2) 0.0277 (3) −0.00164 (17) 0.00594 (19) 0.00302 (18)
N1 0.0295 (18) 0.0244 (16) 0.0288 (18) −0.0045 (13) 0.0095 (14) −0.0032 (13)
N2 0.0333 (18) 0.0282 (17) 0.0252 (18) 0.0054 (13) 0.0054 (14) −0.0004 (13)
N3 0.0252 (17) 0.0267 (17) 0.0320 (19) −0.0028 (13) 0.0054 (14) −0.0032 (13)
N4 0.0294 (17) 0.0297 (17) 0.0276 (18) −0.0024 (13) 0.0073 (14) −0.0020 (13)
C1 0.039 (2) 0.037 (2) 0.039 (3) −0.0065 (18) 0.019 (2) −0.0012 (19)
C2 0.048 (3) 0.037 (2) 0.032 (2) −0.0008 (19) 0.014 (2) 0.0108 (18)
C3 0.050 (3) 0.039 (3) 0.030 (2) 0.0088 (19) 0.001 (2) 0.0068 (18)
C4 0.039 (3) 0.051 (3) 0.039 (3) 0.009 (2) −0.010 (2) −0.007 (2)
C5 0.025 (2) 0.040 (2) 0.054 (3) −0.0029 (17) −0.002 (2) −0.005 (2)
C6 0.042 (3) 0.029 (2) 0.048 (3) −0.0098 (18) 0.016 (2) −0.0040 (19)
C7 0.050 (3) 0.026 (2) 0.042 (3) −0.0054 (18) 0.014 (2) 0.0059 (18)
C8 0.037 (2) 0.036 (2) 0.034 (2) 0.0092 (17) 0.0049 (18) 0.0057 (18)
C9 0.027 (2) 0.048 (3) 0.037 (3) 0.0015 (18) −0.0034 (18) −0.0012 (19)
C10 0.025 (2) 0.047 (3) 0.044 (3) −0.0047 (18) 0.0070 (19) −0.003 (2)
I2 0.04667 (19) 0.03273 (17) 0.0554 (2) 0.00644 (12) 0.00368 (14) 0.00011 (13)

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Geometric parameters (Å, º)

I1—Zn1 2.6619 (5) C3—H3A 0.9700
Zn1—N1 2.101 (3) C3—H3B 0.9700
Zn1—N2 2.121 (3) C3—C4 1.525 (5)
Zn1—N3 2.121 (3) C4—H4A 0.9700
Zn1—N4 2.110 (3) C4—H4B 0.9700
N1—H1 0.9800 C4—C5 1.522 (6)
N1—C1 1.481 (4) C5—H5A 0.9700
N1—C10 1.483 (4) C5—H5B 0.9700
N2—H2 0.9800 C6—H6A 0.9700
N2—C2 1.471 (4) C6—H6B 0.9700
N2—C3 1.468 (4) C6—C7 1.509 (5)
N3—H3 0.9800 C7—H7A 0.9700
N3—C5 1.471 (4) C7—H7B 0.9700
N3—C6 1.470 (4) C8—H8A 0.9700
N4—H4 0.9800 C8—H8B 0.9700
N4—C7 1.486 (4) C8—C9 1.510 (5)
N4—C8 1.482 (4) C9—H9A 0.9700
C1—H1A 0.9700 C9—H9B 0.9700
C1—H1B 0.9700 C9—C10 1.516 (5)
C1—C2 1.507 (5) C10—H10A 0.9700
C2—H2A 0.9700 C10—H10B 0.9700
C2—H2B 0.9700
N1—Zn1—I1 101.81 (8) N2—C3—H3B 109.4
N1—Zn1—N2 82.64 (11) N2—C3—C4 111.3 (3)
N1—Zn1—N3 155.51 (11) H3A—C3—H3B 108.0
N1—Zn1—N4 95.77 (11) C4—C3—H3A 109.4
N2—Zn1—I1 102.79 (8) C4—C3—H3B 109.4
N2—Zn1—N3 88.94 (11) C3—C4—H4A 108.4
N3—Zn1—I1 102.47 (8) C3—C4—H4B 108.4
N4—Zn1—I1 101.21 (8) H4A—C4—H4B 107.4
N4—Zn1—N2 155.76 (11) C5—C4—C3 115.7 (3)
N4—Zn1—N3 82.61 (11) C5—C4—H4A 108.4
Zn1—N1—H1 105.9 C5—C4—H4B 108.4
C1—N1—Zn1 108.5 (2) N3—C5—C4 111.9 (3)
C1—N1—H1 105.9 N3—C5—H5A 109.2
C1—N1—C10 111.5 (3) N3—C5—H5B 109.2
C10—N1—Zn1 118.3 (2) C4—C5—H5A 109.2
C10—N1—H1 105.9 C4—C5—H5B 109.2
Zn1—N2—H2 107.0 H5A—C5—H5B 107.9
C2—N2—Zn1 104.6 (2) N3—C6—H6A 110.1
C2—N2—H2 107.0 N3—C6—H6B 110.1
C3—N2—Zn1 115.5 (2) N3—C6—C7 108.2 (3)
C3—N2—H2 107.0 H6A—C6—H6B 108.4
C3—N2—C2 115.3 (3) C7—C6—H6A 110.1
Zn1—N3—H3 108.1 C7—C6—H6B 110.1
C5—N3—Zn1 114.5 (2) N4—C7—C6 109.7 (3)
C5—N3—H3 108.1 N4—C7—H7A 109.7
C6—N3—Zn1 103.3 (2) N4—C7—H7B 109.7
C6—N3—H3 108.1 C6—C7—H7A 109.7
C6—N3—C5 114.3 (3) C6—C7—H7B 109.7
Zn1—N4—H4 106.2 H7A—C7—H7B 108.2
C7—N4—Zn1 108.6 (2) N4—C8—H8A 109.2
C7—N4—H4 106.2 N4—C8—H8B 109.2
C8—N4—Zn1 116.1 (2) N4—C8—C9 112.0 (3)
C8—N4—H4 106.2 H8A—C8—H8B 107.9
C8—N4—C7 112.7 (3) C9—C8—H8A 109.2
N1—C1—H1A 109.6 C9—C8—H8B 109.2
N1—C1—H1B 109.6 C8—C9—H9A 108.5
N1—C1—C2 110.3 (3) C8—C9—H9B 108.5
H1A—C1—H1B 108.1 C8—C9—C10 115.2 (3)
C2—C1—H1A 109.6 H9A—C9—H9B 107.5
C2—C1—H1B 109.6 C10—C9—H9A 108.5
N2—C2—C1 107.6 (3) C10—C9—H9B 108.5
N2—C2—H2A 110.2 N1—C10—C9 112.9 (3)
N2—C2—H2B 110.2 N1—C10—H10A 109.0
C1—C2—H2A 110.2 N1—C10—H10B 109.0
C1—C2—H2B 110.2 C9—C10—H10A 109.0
H2A—C2—H2B 108.5 C9—C10—H10B 109.0
N2—C3—H3A 109.4 H10A—C10—H10B 107.8
Zn1—N1—C1—C2 −30.6 (3) N4—C8—C9—C10 76.8 (4)
Zn1—N1—C10—C9 46.4 (4) C1—N1—C10—C9 173.2 (3)
Zn1—N2—C2—C1 −50.4 (3) C2—N2—C3—C4 −175.4 (3)
Zn1—N2—C3—C4 62.3 (4) C3—N2—C2—C1 −178.3 (3)
Zn1—N3—C5—C4 −63.1 (4) C3—C4—C5—N3 69.4 (4)
Zn1—N3—C6—C7 53.0 (3) C5—N3—C6—C7 178.0 (3)
Zn1—N4—C7—C6 27.4 (3) C6—N3—C5—C4 178.0 (3)
Zn1—N4—C8—C9 −53.1 (4) C7—N4—C8—C9 −179.3 (3)
N1—C1—C2—N2 55.6 (4) C8—N4—C7—C6 157.5 (3)
N2—C3—C4—C5 −68.4 (4) C8—C9—C10—N1 −72.4 (4)
N3—C6—C7—N4 −55.5 (4) C10—N1—C1—C2 −162.5 (3)

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) iodide (I) . Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
N1—H1···I2i 0.98 2.82 3.708 (3) 151
N2—H2···I2 0.98 2.78 3.634 (3) 146
N3—H3···I1ii 0.98 3.20 3.819 (3) 123
N3—H3···I2 0.98 3.13 3.897 (3) 137
N4—H4···I1iii 0.98 2.86 3.680 (3) 142

Symmetry codes: (i) −x−1/2, y−1/2, −z+1/2; (ii) −x+1/2, y+1/2, −z+1/2; (iii) −x, −y+1, −z.

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Crystal data

[ZnI(C10H24N4)]I3 F(000) = 1416
Mr = 773.30 Dx = 2.448 Mg m3
Monoclinic, I2/m Mo Kα radiation, λ = 0.71073 Å
a = 10.0629 (12) Å Cell parameters from 2913 reflections
b = 12.6263 (12) Å θ = 2.0–26.7°
c = 16.5133 (16) Å µ = 7.05 mm1
β = 90.921 (10)° T = 293 K
V = 2097.9 (4) Å3 Prism, clear light red
Z = 4 0.18 × 0.18 × 0.10 mm

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Data collection

Xcalibur, Eos diffractometer 1931 independent reflections
Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source 1531 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.065
Detector resolution: 16.1593 pixels mm-1 θmax = 25.0°, θmin = 2.0°
ω scans h = −11→11
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2019) k = −14→15
Tmin = 0.563, Tmax = 1.000 l = −19→19
1931 measured reflections

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Refinement

Refinement on F2 Primary atom site location: dual
Least-squares matrix: full Hydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.065 H-atom parameters constrained
wR(F2) = 0.209 w = 1/[σ2(Fo2) + (0.1207P)2 + 24.1639P] where P = (Fo2 + 2Fc2)/3
S = 1.02 (Δ/σ)max < 0.001
1931 reflections Δρmax = 1.86 e Å3
100 parameters Δρmin = −2.20 e Å3
0 restraints

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refined as a 2-component twin.

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq Occ. (<1)
I1 0.75984 (13) 1.000000 0.25422 (8) 0.0546 (4)
Zn1 0.7426 (3) 0.78147 (17) 0.24844 (16) 0.0313 (6) 0.5
N1 0.5759 (11) 0.7637 (8) 0.3129 (7) 0.054 (3)
H1 0.547169 0.831842 0.316695 0.065*
N2 0.6627 (11) 0.7691 (9) 0.1362 (6) 0.052 (2)
H2 0.638693 0.836861 0.124367 0.062*
C1 0.5986 (19) 0.7286 (12) 0.3953 (8) 0.071 (4)
H1A 0.592616 0.652075 0.398272 0.085*
H1B 0.532274 0.758792 0.430502 0.085*
C2 0.4593 (13) 0.7157 (13) 0.2742 (11) 0.071 (4)
H2A 0.382036 0.730667 0.306679 0.085*
H2B 0.471137 0.639494 0.272985 0.085*
C3 0.4330 (15) 0.7558 (16) 0.1869 (12) 0.088 (6)
H3A 0.344086 0.734576 0.170108 0.106*
H3B 0.435683 0.832586 0.187081 0.106*
C4 0.5303 (16) 0.7154 (15) 0.1257 (9) 0.076 (5)
H4A 0.541286 0.639577 0.132177 0.091*
H4B 0.495758 0.728671 0.071478 0.091*
C5 0.7596 (16) 0.7338 (12) 0.0779 (7) 0.063 (4)
H5A 0.737529 0.762622 0.024916 0.076*
H5B 0.757810 0.657158 0.074099 0.076*
I2 1.000000 0.500000 0.500000 0.0780 (7)
I3 0.7276 (2) 0.500000 0.55899 (13) 0.0992 (7)
I4 0.500000 1.000000 0.500000 0.1262 (15)
I5 0.3190 (3) 1.000000 0.3615 (2) 0.1519 (13)

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
I1 0.0706 (8) 0.0283 (6) 0.0650 (8) 0.000 0.0056 (6) 0.000
Zn1 0.0299 (11) 0.0357 (16) 0.0285 (10) 0.0018 (15) 0.0024 (8) 0.0004 (15)
N1 0.061 (6) 0.032 (5) 0.070 (7) 0.005 (5) 0.028 (5) 0.001 (5)
N2 0.067 (6) 0.041 (6) 0.048 (5) −0.005 (5) −0.008 (5) 0.002 (4)
C1 0.109 (12) 0.056 (8) 0.049 (7) −0.003 (9) 0.028 (8) 0.002 (6)
C2 0.036 (6) 0.062 (9) 0.115 (13) −0.002 (6) 0.017 (7) 0.003 (9)
C3 0.049 (8) 0.084 (13) 0.131 (16) 0.014 (8) −0.031 (10) −0.002 (11)
C4 0.084 (10) 0.078 (11) 0.064 (9) −0.008 (9) −0.034 (8) 0.009 (8)
C5 0.104 (11) 0.056 (9) 0.030 (6) −0.004 (8) 0.010 (7) −0.004 (5)
I2 0.1383 (19) 0.0391 (10) 0.0555 (10) 0.000 −0.0321 (11) 0.000
I3 0.1264 (15) 0.0671 (11) 0.1039 (13) 0.000 −0.0103 (11) 0.000
I4 0.124 (2) 0.0324 (10) 0.227 (4) 0.000 0.123 (2) 0.000
I5 0.1283 (19) 0.0718 (13) 0.258 (4) 0.000 0.062 (2) 0.000

Iodido(1,4,8,11-tetraazacyclotetradecane-κ4N1,N4,N8,N11)zinc(II) triiodide (II) . Geometric parameters (Å, º)

I1—Zn1i 2.766 (2) N2—C4 1.502 (19)
I1—Zn1 2.766 (2) N2—C5 1.451 (17)
Zn1—Zn1ii 0.810 (4) C1—C5ii 1.56 (2)
Zn1—N1ii 2.179 (10) C2—C3 1.55 (2)
Zn1—N1 2.014 (10) C3—C4 1.51 (3)
Zn1—N2ii 2.210 (10) I2—I3iii 2.924 (2)
Zn1—N2 2.014 (10) I2—I3 2.924 (2)
N1—C1 1.444 (19) I4—I5iv 2.901 (4)
N1—C2 1.458 (19) I4—I5 2.901 (4)
Zn1i—I1—Zn1 171.86 (12) C1—N1—Zn1ii 103.7 (9)
Zn1ii—Zn1—I1 164.9 (4) C1—N1—C2 113.5 (12)
Zn1ii—Zn1—N1ii 67.6 (4) C2—N1—Zn1ii 111.2 (9)
Zn1ii—Zn1—N1 90.6 (5) C2—N1—Zn1 119.1 (9)
Zn1ii—Zn1—N2 93.0 (5) Zn1—N2—Zn1ii 21.47 (16)
Zn1ii—Zn1—N2ii 65.5 (4) C4—N2—Zn1 118.8 (9)
N1ii—Zn1—I1 103.0 (3) C4—N2—Zn1ii 109.8 (8)
N1—Zn1—I1 98.3 (3) C5—N2—Zn1ii 101.5 (8)
N1—Zn1—N1ii 158.18 (16) C5—N2—Zn1 111.8 (8)
N1—Zn1—N2ii 82.2 (5) C5—N2—C4 112.9 (12)
N1ii—Zn1—N2ii 88.4 (4) N1—C1—C5ii 107.7 (11)
N2ii—Zn1—I1 103.4 (3) N1—C2—C3 113.4 (13)
N2—Zn1—I1 97.6 (3) C4—C3—C2 114.3 (13)
N2—Zn1—N1 98.9 (5) N2—C4—C3 110.8 (13)
N2—Zn1—N1ii 82.9 (5) N2—C5—C1ii 109.8 (10)
N2—Zn1—N2ii 158.53 (16) I3iii—I2—I3 180.0
Zn1—N1—Zn1ii 21.82 (16) I5iv—I4—I5 180.0
C1—N1—Zn1 114.3 (10)

Symmetry codes: (i) x, −y+2, z; (ii) −x+3/2, −y+3/2, −z+1/2; (iii) −x+2, −y+1, −z+1; (iv) −x+1, −y+2, −z+1.

References

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, II. DOI: 10.1107/S2056989021011166/hb7994sup1.cif

e-77-01185-sup1.cif (491.4KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989021011166/hb7994Isup2.hkl

e-77-01185-Isup2.hkl (207.7KB, hkl)

Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989021011166/hb7994IIsup3.hkl

e-77-01185-IIsup3.hkl (106.4KB, hkl)

CCDC references: 2115387, 2115388

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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