Abstract
Background and Aims:
Gene therapy could provide curative therapies to many inherited monogenic liver diseases. Clinical trials have largely focused on adeno-associated viruses (AAV) for liver gene delivery. These vectors, however, are limited by small packaging size, capsid immune responses, and inability to re-dose. As an alternative, nonviral, hydrodynamic injection through vascular routes can successfully deliver plasmid DNA (pDNA) into mouse liver but has achieved limited success in large animal models.
Methods:
We explored hydrodynamic delivery of pDNA through the biliary system into the liver of pigs using ERCP, and a power injector to supply hydrodynamic force. Human Factor IX (hFIX), deficient in Hemophilia B, was used as a model gene therapy.
Results:
Biliary hydrodynamic injection was well tolerated without significant changes in vital signs, liver enzymes, hematology, or histology. No off-target pDNA delivery to other organs was detected by PCR. Immunohistochemistry revealed that 50.19% of the liver stained positive for hFIX after hydrodynamic injection at 5.5 mg pDNA, with every hepatic lobule in all liver lobes demonstrating hFIX-expression. hFIX-positive hepatocytes were concentrated around the central vein, radiating outward across all 3 metabolic zones. Biliary hydrodynamic injection in pigs resulted in significantly higher transfection efficiency than mouse vascular hydrodynamic injection at matched pDNA per liver weight dose (32.7-51.9% vs 18.9%, p<0.0001).
Conclusions:
Biliary hydrodynamic injection via ERCP can achieve higher transfection efficiency into hepatocytes compared with AAV at magnitudes less cost in a clinically relevant human-sized large animal. This technology may serve as a platform for gene therapy of human liver diseases.
Keywords: Gene therapy, hydrodynamic, Non-viral, ERCP, hemophilia
Introduction:
Gene therapy is a long-sought goal for many hereditary liver monogenic diseases, including hemophilia, Wilson’s Disease, alpha-1 antitrypsin disease, and phenylketonuria. The most promising gene delivery system, so far, has been adeno-associated virus (AAV) vectors, which have achieved some success in clinical trials. AAV is a nonenveloped virus with 4.8 kb genome, and can mediate efficient liver transduction in mouse and primate models.1
However, several challenges with AAV vectors have occurred as they have advanced into humans. In early clinical studies for hemophilia B, the highest AAV dose yielded 12% of normal hFIX levels, but a T-cell response against AAV capsid protein developed and transgene expression was lost.2 Steroids were used in later studies to inhibit T-cell responses.3,4 Other concerns include the gradual decline in expression over time due to the episomal status of the genome, which is particularly challenging in pediatric patients with growing livers,5 but also seen in an adult hemophilia A trial with a progressive decline in Factor VIII activity over 3 years.6 Redosing AAV gene therapy could alleviate the loss of genome, but the development of antibodies against the AAV capsid after the first administration precludes it.7 Even before first dosing, 30% to 70% of the population has antibodies against common AAV serotypes, making them ineligible for treatment.8
As an alternative, a nonviral, redosable gene delivery strategy could be transformative. Hydrodynamic tail vein injection (HTVI) of naked DNA has been a convenient method to deliver genes into mouse livers,9 can be redosed multiple times,9 and can achieve therapeutic hFIX levels in mice for 1.5 years after injection.10 HTVI causes temporary right heart failure and hepatic congestion in mice, creating pores in the hepatocyte membrane for DNA delivery inside cells.11 Importantly, hydrodynamic delivery does not pose any size constraints on the DNA vector (>100 kb achieved), unlike AAV. 12 Translating hydrodynamic gene delivery into the liver of large animals has proven to be a formidable challenge, however, requiring catheterization procedures to isolate liver venous systems to deliver local hydrodynamic pressure.13,14 A liver lobe-specific vascular injection procedure in pigs can achieve gene expression,15 but the overall expression levels in large animals remain significantly lower than in mice.16 A pilot clinical trial of vascular hydrodynamic injection into the liver of human patients to express thrombopoietin was well-tolerated, but did not achieve increases in platelet counts.17
An alternative strategy for liver-directed hydrodynamic delivery is to inject DNA through the biliary tract.18,19 The biliary tract contacts all hepatocytes through a parallel, counterflow network to hepatic sinusoids within liver lobules,20 eventually draining bile through the common hepatic duct (CHD) and into the small intestine. The total volume of the biliary tract (~30 mL)21 is significantly lower than the total liver blood volume (~600 mL).22 The biliary system is routinely accessed clinically via ERCP, of which 350 to 500,000 procedures are performed in the United States annually.23 We previously investigated biliary hydrodynamic delivery, achieving proof-of-concept that DNA could be delivered into all lobes and mediate stable protein expression.24 However, hepatocyte transfection efficiency, localization and distribution of transfected hepatocytes, key safety data including off-target transfection are required before human use.
Herein, we sought to increase the efficiency of biliary hydrodynamic injection to levels suitable to treat human disease, as well as to quantify the transfection efficiency. Given the potential risks of hydrodynamic injection, we also investigated multiple different safety aspects of the procedure. We chose to use pigs as our model, which have similar organ size to human patients, and used commercially available equipment used currently in clinical care to ensure all DNA dosing and procedures would be clinically translatable for human patients,
Methods:
Animal experiments
All animal experiments were conducted under the approval of the animal care and use committee of Johns Hopkins University and adhere to the guidelines of the NIH Guide for the Care and Use of Laboratory Animals. Mouse experiments were performed on C57BL/6 strain (Jackson Labs). Yorkshire pigs were acquired from Archer Farms, Darlington, MD. All pigs were female and were acquired for their targeted weight before procedure. Pigs were acclimated and housed in conditions as previous described.24
Endoscopy Procedure
Food was withheld from pigs the night before the procedure, and all pigs were weighed before the procedure for proper anesthetic doses. Once sedated, pretreatment blood draws and stool were collected. Vital signs were monitored throughout the procedure by a veterinary technician. An endoscope (therapeutic video duodenoscope, ED-580XT, FUJIFILM Medical Systems U.S.A.) was advanced into the small intestine. A sphincterotome (CleverCut 3V, Olympus Medical) preloaded with a 0.025-inch hydrophilic guidewire (VisiGlide, Olympus Medical) was then advanced into the common hepatic duct (CHD) as verified by fluoroscopy using 4 to 5 mL of radiocontrast solution (Omnipaque, 350 mg/mL; GE Health Co) and a Philips Allura C-Arm. The sphincterotome was then exchanged over the wire for an extraction balloon catheter (Multi-SV Plus, Olympus Medical) with the balloon catheter being inflated to 11.5 mm at the CHD 1 to 2 cm below the hepatic hilum. A power injector (MEDRAD Mark 7 Arterion, Bayer) was filled with plasmid DNA (pDNA) solution and attached to the catheter injection port. Injection parameters were executed as listed in Supplementary Table 1. The balloon was deflated 5 seconds after injection, and repeat fluoroscopy with 4 to 5 mL of contrast injection was performed to assess the intact biliary system. Transabdominal ultrasound was performed on pig no. 2 by a board-certified radiologist before and after hydrodynamic injection. Post-treatment blood draw and post-treatment stool were then obtained. Total procedure time was monitored from insertion of the endoscope through injection and removal of the endoscope. Specific details on anesthesia doses for the procedure are provided in the enclosed reference.24
Additional methods can be found in Appendix 1.
Results:
Biliary hydrodynamic injection procedure
We chose to use hFIX as a model gene to deliver into pigs, given its extensive investigation in different gene therapy models and in clinical trials. As a first step, we aimed to deliver an hFIX DNA expression cassette currently used in AAV clinical trials,3,4,25 ensuring high-level expression, and combined it with hyperactive piggyBac (hyPBase) transposase for gene integration. The latter has increased expression in mouse models and serves to avoid gene silencing of the injected plasmid DNA. We validated the gene vectors in mice, yielding efficient hFIX expression after HTVI more than 200% over normal human levels (Supplementary Figure 1). For biliary hydrodynamic injection, we used parameters of 30 mL of volume injected at a flow rate of 2 mL/sec (Supplementary Table 1).24 Two doses of hFIX DNA transposon were used, 3 mg and 5.5 mg, at similar transposon to transposase ratios, to evaluate whether any dose dependence in hFIX expression was observed (Supplementary Table 1).
For our studies, 4 female Yorkshire pigs weighing between 35 to 37 kilograms were obtained. During each procedure, an endoscope was advanced into the small intestine and the ampulla of Vater was visualized (Figure 1A). An occlusion balloon tipped catheter was advanced through the working channel of the endoscope, through the ampulla, and into the common bile duct and eventually the common hepatic duct (CHD). Before pDNA injection, retrograde contrast injection opacified the biliary tree to ensure the catheter placement would result in access to the entire liver parenchyma and that no aberrant ductal anatomy was present (Figure 1B and C). Biliary hydrodynamic injection itself is able to deliver contrast solution into all lobes of the liver in a separate pig experiment, whereas after hydrodynamic injection, repeat fluoroscopy demonstrated that the biliary system remains intact without leakage of contrast solution into the liver parenchyma or abdominal cavity (Figure 1D and E). The 4 ERCP hydrodynamic procedures averaged 43 ± 11 minutes.
Safety of biliary hydrodynamic injection
We next evaluated the potential for injury from biliary hydrodynamic injection. The gallbladder measured with transabdominal ultrasound pre- and postprocedure did not demonstrate changes in size, confirming balloon seal prevented fluid entry into this space (Supplementary Figure 2A). Vital signs taken did not show any acute changes in blood pressure, heart rate, pulse oximetry, or respiratory tidal volumes from pre- to postprocedure (Figure 1E; Supplementary Figure 2B).
In the time after hydrodynamic injection, there were no significant changes in liver transaminases, total or direct bilirubin, albumin, and gamma-glutamyl transferase (Figure 1F). No leukocytosis in the 4 days afterinjection was observed, whereas hemoglobin, red blood cell count, platelet values did not show significant changes (Figure 1G). Pigs displayed normal growth patterns (~1 kg per week) posthydrodynamic injection, increasing weight from 35.33 ± 0.33 kg to 38.83 ± 0.33 kg in 3 weeks (p=0.0018).
We selected pig no. 3 for tissue analysis at 1 week after injection because it received a higher pDNA dose. Moreover, this timepoint is before any potential immune response against hFIX. Upon necropsy of pig no. 3, gross visual inspection of the visceral and diaphragmatic surfaces of the liver exhibited no abnormalities (Figure 2A and B). The biliary tract including the right and left hepatic bile ducts was intact during dissection (Figure 2C), confirming post-injection fluoroscopic imaging (Figure 1D). Liver histology resembled an uninjected pig, with no immune infiltrate or necrosis (Figure 2D).
Bile collected at 1 week after injection was negative for hFIX DNA, confirming degradation by that time point (Figure 2E). Because pDNA in the bile ducts eventually drains into the small intestine, we evaluated if any pDNA is taken up by pig intestinal bacteria. Stool DNA collected from 2 pigs was negative for hFIX DNA at all time points (Figure 2F).
Off-target gene delivery into other tissues beyond the liver was next evaluated. PCR testing revealed the presence of pDNA in the plasma 15 minutes after injection (Figure 2E), explained by the escape of fluid from biliary canaliculi through hepatocyte tight junctions and into liver venous circulation.19 By day 1 after injection, pDNA was absent, consistent with degradation by serum DNases.26,27 Different tissues (23 in total) were also investigated for transfection. All tissues were negative for hFIX DNA by PCR indicating no pDNA delivery (Figure 2G).
Evaluation of human FIX gene expression in pigs
Samples were taken in proximal and distal portions of every liver lobe in relation to the hydrodynamical injection point in the CHD given potential variation in hydrodynamic pressure (Figure 3A). We observed delivery of the hFIX DNA into all pig liver lobes at one week (Figure 3B) and 3 weeks (Supplementary Figure 3) after hydrodynamic injection. RNA expression was observed in every liver lobe, indicating pDNA presence inside the nucleus (Figure 3C). hFIX protein was next evaluated by western blot. Examining antibody specificity, the hFIX antibody stained the correct hFIX protein size (70 kDa) in human plasma, whereas a low level of porcine FIX cross-reactivity was observed in pig plasma, calculated to be 6.4% (Supplementary Figure 4).
Western blot of pig liver tissue demonstrated clear bands of hFIX staining in all hFIX gene injected liver lobes at varying expression levels (Figure 3D), with only low-level cross-reactivity detected in un-injected pig liver. Semi-quantitative analysis of normalized band intensity demonstrated all hFIX-injected bands were well above uninjected control liver (Figure 3D). Tissue hFIX protein level was calculated to be 10.11% ± 4.05% of the control pig liver’s porcine factor IX level. Plasma levels of hFIX in all 4 pigs were negative at day 1 and day 4 after injection, as expected, consistent with a lack of hFIX secretion seen in hFIX-transgenic pigs.28
Analysis of transfection efficiency of hFIX in pig liver
Hepatocytes positive for hFIX were observed by immunohistochemistry (IHC) in the injected pig liver. The hFIX stain was cytoplasmic within hepatocytes of injected pigs, matching hFIX staining in a human liver control (Figure 4A). Across entire tissue sections, we observed hFIX-positive hepatocytes around 100% of central veins analyzed and within every lobule (Figure 4B). Although the most intense immunostaining was observed around the central vein, hFIX-positive hepatocytes could be identified across all 3 metabolic zones, including near the portal triad (Supplementary Figure 5).
hFIX-positive hepatocytes were present in all 4 pigs injected and in every liver lobe tested (Figure 5A), indicating that a single CHD injection site could reach all liver lobes efficiently. We quantified the transfection efficiency by calculating the hFIX stained area within multiple lobules per section. There was no clear right versus left liver predominance in transfection efficiency (Figure 5A), whereas proximal and distal tissue sections to the CHD injection site had generally similar hFIX-positive area percentage (Figure 5B). There was a trend toward a dose dependent response to plasmid DNA, with a significant difference in the percentages of hFIX-positive cells from pig no. 1 (3 mg) and the two 5.5 mg dosed pigs (pig no. 3, no. 4) (Figure 5C).
Comparing mouse HTVI and biliary hydrodynamic injection
We next sought to analyze mouse HTVI versus pig biliary hydrodynamic injection in terms of percent hepatocyte transfection. Biliary hydrodynamic injection in pigs unexpectedly yielded significantly more hFIX-positive hepatocytes than an HTVI method in mice (Figure 6A and C).
Mouse HTVI yielded hFIX-positive hepatocytes primarily in proximity to the central vein, although often not directly adjacent to the central vein, and almost never in periportal areas of the lobule (Figure 6A). By comparison, pig hydrodynamic injection was also strongest around the central vein, with almost uniform transfection of cells adjacent to the central vein; hFIX-positive periportal hepatocytes could be readily detected as well. Concerning the localization of hepatocytes, the different distributions within zones of the hepatic lobule between species are likely explained by the different routes/mechanisms of injection (Figure 6B). Both techniques were efficient at delivery to every lobule (Figure 4B, Supplementary 6).
Discussion:
In this study, we have investigated the ability to translate hydrodynamic gene delivery into a large animal model. To improve on vascular strategies, we hypothesized that the biliary system offers a safer and technically simpler route for hydrodynamic injection. We found that pigs tolerated the procedure with no acute changes in vital signs. Moreover, unlike AAV gene therapy where the vector transduces many off-target issues,1 we were only able to find pDNA inside the liver. Overall, we found hFIX expression in every lobule of every lobe in every pig that underwent the procedure, with no clear transfection preference between the right and left liver lobes. Hepatocytes in the periportal and pericentral regions of the lobule were transfected. All pigs continued expressing hFIX until the end of the experiment at 3 weeks, suggesting expression stability and immune tolerance, given that adaptive immune responses typically form by 2 weeks. Of note, a similar hyPBase transposon experiment in mice showed stable hFIX expression for 1 year.29 Although there is reason to hypothesize that the expression in pigs could be observed at similarly long time points, a future study is needed to obtain experimental proof.
Impressively, we found 50.19% ± 3.50% of hepatocytes were hFIX-positive in the high-dose pDNA pigs. The majority of transfected cells clustered around the central vein, radiating outward along the hepatic sinusoids. hFIX-positive hepatocytes, usually with weaker expression, could also be observed in periportal areas along lobular borders. Comparing our non-viral liver transfection efficiency in pigs to AAV vector transduction efficiency in large animal studies, we observed higher transfection efficiency in our study (32.7%-51.9%) compared with ssAAV8, which yielded an average 17% transduced area in cynomolgus and rhesus macaques at 3 × 1012 GC/kg dose,30 and to scAAV3B, which yielded 36% in rhesus macaques at a dose of 1 × 1013 GC/kg.31 Importantly, we observed significant hFIX protein expression (10.11% ± 4.05% of pig FIX level) in liver tissue, which could portend clinically significant hFIX plasma levels in a different animal model that secretes hFIX efficiently. Future increases in pDNA dose and/or injection parameters32 may yield additional gains to increase hepatocyte transfection, which is suggested by the increased transfection area at the higher 5.5 mg DNA dose.
The high transfection efficiency achieved in our study greatly exceeds that which intracellular protein liver disorders such as Wilson’s Disease (20%)33 and Crigler-Najjar (1-2%)34 require for clinical cure, suggesting significant promise for the biliary hydrodynamic approach. Future studies will evaluate biliary hydrodynamic gene delivery of hFIX in animal models such as dogs and non-human primates to gauge plasma hFIX plasma levels, given the inability of pigs to secrete hFIX. Indeed, a transgenic pig with hFIX cDNA inserted into the pig FIX locus under the endogenous promoter yielded strikingly low hFIX plasma levels (~80 ng/mL vs 5000 ng/mL in humans),28 supporting that pigs have a fundamental biological difference that prevents their hepatocytes from efficiently secreting hFIX.
Compared with prior vascular hydrodynamic approaches in pigs, our biliary hydrodynamic injection requires significantly less volume of fluid (30 mL total liver vs 200-300 mL per lobe), slower flow rates (2 mL/sec vs 20-100 mL/sec), and smaller DNA doses (3-5 mg for the whole liver vs 15-20 mg per liver or liver lobe) for gene delivery.14,35–37 Despite these higher parameters and DNA doses, vascular approaches demonstrated at best achieved only 5% to 15% transfection efficiency in individual liver lobes.14,35–37 Vascular hydrodynamic injection in pigs also generally elicited higher ALT/AST spikes (100-200 U/L) after injection compared with no elevation in the current study.35 In comparison with our previous study of biliary injection, the order of magnitude improvements in transfection efficiency likely relates to the use of powerful liver-specific promoters, as well as a more efficient transposition, exemplified by a lower ratio of transposon: transposase plasmid injected (7:1 vs 25:1), and a more hyperactive transposon activity. All of these elements greatly improved expression from HTVI in a mouse model.29
Concerning the limitations of biliary hydrodynamic injection, there is the potential for pancreatitis with ERCP procedure in human patients, although, given the injection location in CHD close to the liver, there should be no higher risk than with a typical, clinical grade ERCP procedure. We were unable to model this potential risk in pigs, as they have separate ducts for bile and pancreas and do not develop post-ERCP pancreatitis. However, due to the inherent risk for post-ERCP pancreatitis, many different strategies have recently been developed to decrease this risk.38 Last, the relative morbidity of many of the monogenic diseases to be treated with this technology likely outweighs this risk of procedure. Another limitation is that pig liver lobules also have more fibrous tissue surrounding them versus humans, which may also modulate the procedure.15 A third limitation could be for certain indications, liver fibrosis could potentially lower hydrodynamic transfection efficiency by obstructing fluid flow.39
In conclusion, we demonstrate that hydrodynamic gene delivery into the liver through the biliary tract in pigs has higher levels of transfection efficiency than AAV-mediated vectors, while possessing no toxicity. Important for clinical translation, pDNA production costs for biliary hydrodynamic approach are 200-fold lower when compared with AAV vector production. Furthermore, the successful use of medical devices used in clinical practice for this gene delivery procedure suggests the potential for rapid clinical translation using the same parameters described in this study. Future investigations will continue to optimize DNA doses and injection settings for individual monogenic diseases in preparation for pilot clinical trials.
Supplementary Material
Acknowledgements:
We thank the assistance of Rebecca Krimins, Virginia Bogdan, Juls Meyer, Mohamad Itani, Yervant Ichkhanian, and Cem Simsek during pig experiments; Katelynn Davis with pig necropsy; Kevan Salimian and Johnson Wang on IHC interpretation; Haiqing Zhao with western blot.
Funding:
This study was supported by the Johns Hopkins Hospital GI Core Center Pilot Project grant (1P30DK089502-01).
Glossary
- AAV
adeno-associated viruses
- ALT
alanine aminotransferase
- AST
aspartate animotransferase
- CHD
common hepatic duct
- CMV
cytomegalovirus
- CTL
control
- DNA
deoxyribonucleic acid
- ERCP
endoscopic retrograde cholangiopancreatography
- GC
genome copy
- GGT
gamma-glutamyl transferase
- H&E
hematoxylin and eosin
- hAAT
human alpha-1 antitrypsin
- hFIX
human factor IX
- hyPBase
hyper active piggyBac transposase
- HTVI
hydrodynamic tail vein injection
- IHC
immunohistochemistry
- LML
left medial lobe
- LLL
left lateral lobe
- PCR
polymerase chain reaction
- pDNA
plasmid DNA
- PLT
platelet
- Q
quadrate
- RBC
red blood cell
- RML
right medial lobe
- RNA
ribonucleic acid
- RLL
right lateral lobe
- SEM
standard error of mean
- TR
terminal repeats
- UTR
untranslated region
- WBC
white blood cell
Footnotes
Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
Competing interests: R.L.K, Y.H., V.K., and F.M.S. have a patent application filed on the work. All other authors do not declare any competing interests.
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