Table 2.
Details of sequencing output for feline herpesvirus type 1 (FHV-1) strains isolated from 10 captive cheetahs (MM-1 through MM-10) and that in a modified live vaccine (MLV).
| Strain | Number Reads | Mapped Reads | Average Mapped Read Length (bp) | Mean Coverage Per Base | GC Content (%) | Mapped Genome Length |
|---|---|---|---|---|---|---|
| MM-1 | 2,224,892 | 894,919 | 183.1 | 1199 | 45.9 | 137,392 |
| MM-2 | 2,596,572 | 724,887 | 183.0 | 970.2 | 45.8 | 137,037 |
| MM-3 | 2,438,790 | 790,548 | 183.6 | 1060.8 | 45.7 | 137,432 |
| MM-4 | 2,481,272 | 834,057 | 191.0 | 1167.1 | 45.3 | 136,996 |
| MM-5 | 2,200,776 | 609,757 | 179.6 | 801.6 | 45.2 | 136,712 |
| MM-6 | 2,537,734 | 832,788 | 190.9 | 1162.9 | 45.1 | 136,761 |
| MM-7 | 2,507,912 | 1,050,187 | 168.5 | 1294.6 | 45.7 | 137,611 |
| MM-8 | 2,106,004 | 693,291 | 188 | 955.2 | 45.3 | 136,818 |
| MM-9 | 1,983,946 | 640,857 | 178.6 | 836.2 | 45.8 | 136,966 |
| MM-10 | 2,199,852 | 520,743 | 191.4 | 729.8 | 45.3 | 136,658 |
| Merial MLV | 1,751,690 | 854,840 | 179.5 | 1122.2 | 45.9 | 137,390 |