Antibodies |
|
Anti-NeuN Antibody, clone A60 |
Sigma-Aldrich |
RRID: AB_2298772
|
Donkey anti-Mouse IgG Secondary Antibody |
Thermo-Fisher |
RRID: AB_2762830
|
|
Bacterial and virus strains |
|
AAV1-EF1a-doublefloxed-hChR2(H134R)-EYFP-WPRE-HGHpA |
unpublished |
RRID: Addgene_20298 |
AAV1-hSyn1-SIO-stGtACR2-FusionRed |
Mahn et al., 2018 |
RRID: Addgene_105677 |
AAV1-Syn-Flex-GCaMP6f-WPRE-SV40 |
Chen et al., 2013 |
RRID: Addgene_100833 |
AAV1-hSyn-DIO-hM4D(Gi)-mCherry |
Krashes et al., 2011 |
RRID: Addgene_44362 |
AAV1-EF1a-FLEX-EGFP |
SWC Viral Vector Core |
N/A |
AAV1-EF1a-FLEX-mCherry |
SWC Viral Vector Core |
N/A |
AAVretro-hSyn-Cre |
SWC Viral Vector Core |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
DiI |
Thermo-Fisher |
Cat# D3911 |
CNO |
Sigma Aldrich |
Cat# SML2304 |
Picrotoxin |
Bio-Techne |
Cat# 1128 |
Kynurenic acid |
Sigma Aldrich |
Cat# K3375 |
|
Experimental models: Organisms/strains |
|
Slc32a1tm2(cre)Lowl |
The Jackson Laboratory |
RRID: IMSR_JAX:028862 |
C57BL/6J |
Charles River |
RRID: IMSR_CRL:27 |
Ai14D |
The Jackson Laboratory |
RRID: IMSR_JAX:007914 |
|
Software and algorithms |
|
MATLAB R2017a |
The MathWorks Inc. |
https://uk.mathworks.com/products/matlab.html; RRID: SCR_001622
|
Psychophysics Toolbox Version 3 |
Brainard, 1997; Pelli, 1997; Kleiner et al., 2007
|
http://psychtoolbox.org; RRID: SCR_002881
|
ScanImage |
Pologruto et al., 2003 |
Vidrio Technologies, LLC; RRID: SCR_014307
|
Kilosort2 |
Pachitariu et al., 2016 |
https://github.com/MouseLand/Kilosort; RRID: SCR_016422
|
Phy |
Rossant et al., 2016 |
https://github.com/cortex-lab/phy |
DeepLabCut |
Mathis et al., 2018 |
https://github.com/DeepLabCut/DeepLabCut |
SpikeGLX |
Janelia Research Campus |
https://github.com/billkarsh/SpikeGLX |
PyPhotometry |
Akam and Walton, 2019 |
https://pyphotometry.readthedocs.io/en/latest/ |
Mantis |
TANDM Solutions Limited |
https://www.mantis64.com/ |