TABLE 3.
List of qPCR primers
| List of RT-qPCR primers | ||
|---|---|---|
| Name of gene | Forward primer | Reverse primer |
| ADK | GACACAAGCCCTGCCAAAGAT | TCAGAGACCAGTTGAGACAGAA |
| CMSS1 | GCCAATGATTTGACTCACAGTCT | CTGAATGCTGTCATCGACCTAAT |
| IRF2BP2 | CCCATGACTCCTACATCCTCTT | GAGGGCGGACTGTTGCTATTC |
| NF1 | AGATGAAACGATGCTGGTCAAA | CCTGTAACCTGGTAGAAATGCGA |
| CHD9 | GAAATGCTAGAAAGGTTGGAGG | CGGGACCAGTGAGAATACGTT |
| FAM19A | TGTTAAAACGGGAACTTGTGAGG | AAGCATCCACACATGATGGAG |
| SCN9A | ATTCGTGGCTCCTTGTTTTCTG | CTACTGGCTTGGCTGATGTTAC |
| RHOF | CCCCATCGGTGTTCGAGAAG | GGCCGTGTCGTAGAGGTTC |
| GRIK5 | CCACCGTGAGCCATATCTGTG | CGCGAAGCGAAGGTACTGAA |
| USP15 | CGACGCTGCTCAAAACCTC | TCCCATCTGGTATTTGTCCCAA |
| EVL | CTTCCGTGATGGTCTACGATG | TGCAACTTGACTCCAACGACT |
| EXOSC8 | CGGTTCAATTAGTACCGCAGAT | ACGTATCCTTTATCAGGGGCAT |
| COPS5 | TGGGTCTGATGCTAGGAAAGG | CTATGATACCACCCGATTGCATT |
| SLC7A6 | CGGGCTTTCAGTTGTTAGACC | ACACAGTCAATCGCTCACGG |
| EVI2B | ACCAACACAATTCAGCGACAC | GTTGTAGGCAAGTGGTTGTCC |
| SPN | GCTGGTGGTAAGCCCAGAC | GGCTCGCTAGTAGAGACCAAA |
| POL | GGTTTATTACAGGGACAGCAGAGA | ACCTGCCATCTGTTTTCCATA |
| GAG | AGTAGTGTGTGCCCGTCTGT | TCGCTTTCAGGTCCCTGTTCG |
| TAT | CAAAAGCCTTAGGCATCTCCT | CCACCTTCTTCTTCGATTCCT |
| β2Microglobulin | AGCGTACTCCAAAGATTCAGGTT | ATGATGCTGCTTACATGTCTCGAT |
| GAPDH | CAAGAAGGTGGTGAAGCAG | GCCAAATTCGTTGTCATACC |
| List of ChIP-qPCR primers | ||
| Amplicon | Forward primer | Reverse primer |
| HIV-1Nuc0 (5′ + 3′ LTR) | CCACACACAAGGCTACTTCC | AACTGGTACTAGCTTGTAGCAC |
| HIV-1 HSS1 (5′ + 3′ LTR) | TGTGAGCCTGCATGGGATGG | GAAAGTCCCCAGCGGAAAGT |
| HIV-1Nuc1/HSS2 (5′ + 3′ LTR) | CGTCTGTTGTGTGACTCTGGT | TCGAGAGAGCTCCTCTGGTT |
| HIV-1HSS2/Nuc2 (5′ LTR) | GCCCGAACAGGGACTTGAAA | TTGGCGTACTCACCAGTCG |
| HIV-1Nuc2/Gag (5′ LTR) | GGTGCGAGAGCGTCAGTAT | AGCTCCCTGCTTGCCCATA |
| Hk2 | GCCGACTCTTGTATTGCCTG | TATTGTAGCACGGCCGGAAA |
| GFP (HIV-1) | GGAGTGGTCCCAGTTCTTGTTG | ACAGGTAGCTTCCCAGTAGTGC |