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. 2021 Dec 14;14:100362. doi: 10.1016/j.onehlt.2021.100362

Estimating the global prevalence of hepatitis E virus in swine and pork products

Pengfei Li a,1, Yunpeng Ji a,b,1, Yunlong Li a, Zhongren Ma b,, Qiuwei Pan a,b,⁎⁎
PMCID: PMC8686068  PMID: 34977322

Abstract

Zoonotic transmission of hepatitis E virus (HEV), in particular the genotype (GT) 3 and GT4 strains, constitutes a major one health issue. Swine serves as an important reservoir and the processed pork products essentially contribute to foodborne transmission. This study comprehensively estimated HEV prevalence in domestic pigs, wild boars, and pork products. At global level, we found nearly 60% domestic pigs and 27% wild boars have ever encountered HEV infection based seroprevalence rate. Nearly 13% domestic and 9.5% wild swine are actively infected based on HEV RNA positivity. Importantly, about 10% of commercial pork products are HEV RNA positive, although available data are limited in this respect. Our results indicate the high prevalence rate of HEV infection in pigs and widespread contamination in pork products, although there are substantial variations at regional and country levels. These findings are important for better understanding the global epidemiology and clinical burden of HEV infection in human population related to zoonotic transmission.

Keywords: Hepatitis E virus, Swine, Pork products, Prevalence, Zoonotic transmission

Abbreviations: HEV, hepatitis E virus; GT, Genotype; 95% CI, 95% confidential interval

1. Introduction

Hepatitis E virus (HEV) is a non-enveloped, single-stranded positive-sense RNA virus. It is recognized as the leading cause of acute viral hepatitis. Globally, it is estimated approximately 939 million corresponding to 1 in 8 individuals have ever been infected with HEV [1]. Among the different HEV genotypes (GT) that affect human health, GT3 and GT4 are zoonotic, which have been found in various animal species [2]. Although HEV infection is usually self-limiting or asymptomatic in healthy individuals, GT3 and GT4 HEV infection in organ transplant patients is prone to develop chronic hepatitis [3,4].

Pigs serve as the major reservoir for the zoonotic HEV strains. Anti-HEV antibodies have been widely detected in both domestic pigs and wild boars [[5], [6], [7]]. There are different routes of HEV transmission from pigs to humans, such as direct contact with the animal, indirectly through contaminated environment and the consumption of pork products. However, the contribution of these different transmission routes can vary tremendously among different settings attributing to multi-factors, such as socioeconomic status, farming systems, food chains and life styles. Nevertheless, the widespread consumption of pork products is inevitably posing a major risk of HEV foodborne transmission in public health. Hepatitis E cases linking to consuming undercooked pork or wild boar meat have been widely reported [8,9].

Globally, the epidemiological feature and clinical burden of HEV infection in human population are distinct among different countries/regions [1]. It is intriguing to postulate whether this is associated with the specific prevalence rate of HEV in local swine population and available pork products. In this study, we aim to estimate the global prevalence of HEV in both domestic pigs and wild boars, as well as pork products in retailers.

2. Methods

2.1. Data sources, search strategies and study selection

A systematic search was conducted in Medline, Embase, Web of science, Cochrane CENTRAL and Google scholar. Databases were searched for articles in English language from inception until 31 May 2021. Studies were included if they contained epidemiological data about HEV in domestic pig or wild boar. The full search strategies and study selection criteria are provided in the Supplementary file S1-S2.

2.2. Data extraction, quality assessment and statistical analysis

Eligible studies were further divided into three study populations: domestic swine, wild boars and market/retailer pork products. Studies were scored according to Joanna Briggs Institute checklist for prevalence studies [10]. A 95% confidence interval (95% CI) was estimated using Wilson score method, and pooled prevalence rate was calculated by the DerSimonian-Laird random-effects model with Freeman-Tukey double arcsine transformation. Funnel plots and Egger regression test were used to assess potential publication biases. ‘Meta’ package in the R-3.5.3 statistical software was used for meta-analysis as previously described [11,12]. Sensitivity analysis was performed by using ‘metainf’ to investigate the effects of group source and potentially unrepresentative samples. The details of quality assessment and statistical analysis are provided in supplementary S3.

3. Results and discussion

By comprehensively searching 5 databases (Supplementary S1–S3), we identified a total of 215 studies met the inclusion criteria, which were processed for analysis of HEV prevalence in domestic pigs, wild boars and pork products (sFig. 1). First, we estimated anti-HEV seroprevalence (indication of ever exposure) and HEV RNA positivity (indication of active infection) in domestic pigs. A total of 84 studies were included to estimate the global anti-HEV seroprevalence, resulting in a pooled rate of 59.33% (37 countries, 95% CI 53.64–64.90, I2 = 99%; sFig. 2). The highest seroprevalence was found in Oceania (75%, 95% CI 64.28–84.40), but this is only based on one study which likely causes bias in estimation. The second highest seroprevalence rate was found in Asia (67.45%, 95% CI 53.50–79.99, I2 = 100%), followed by Europe (57.46%, 95% CI 49.82–64.93, I2 = 99%), Africa (53.46%, 95% CI 43.26–63.52, I2 = 92%), and South America (53.03%, 95% CI 33.79–71.81, I2 = 99%) (sFig. 3). Based on 118 studies from 45 countries/territories, the global estimation of HEV RNA positive rate was 12.71% (95% CI 10.81–14.73, I2 = 97%). The highest rate was found in North America (18.10%, 95% CI 8.71–29.84, I2 = 97%), followed by Europe (17.19%, 95% CI 13.16–21.61, I2 = 98%), South America (15.67%, 95% CI 6.75–27.33, I2 = 98%), Africa (12.29%, 95% CI 0.01–38.70, I2 = 99%), Asia (8.23%, 95% CI 6.21–10.49, I2 = 97%), and Oceania (6.52%, 95% CI 2.23–12.63) (sFigs. 4 and 5).

At country level, HEV prevalence in domestic pigs varies substantially, from 9.90% (Thailand, 95% CI 8.01–11.96) to 84.02% (India, 95% CI 44.05–100.00, I2 = 99%) of anti-HEV seroprevalence, and from 0% (Croatia, 95% CI 0.00–0.37) to 76.67% (Nigeria, 95% CI 67.32–84.89) of HEV RNA positivity (Table 1, Fig. 1). Importantly, we have collected genotyping information of swine HEV. GT3 is universally prevalent across the globe, whereas GT4 is mainly present in Western Pacific region. Interestingly, GT3 and GT4 are co-circulating in countries/territories, such as mainland China, Taiwan, Korea and Japan (Table 1, Fig. 1). This is consistent with clinical observations that both GT3 and GT4 HEV patients have been reported from these regions [[13], [14], [15], [16]]. Although Europe is dominated by GT3, GT4 HEV has been identified in some peculiar cases including chronically infected patients [17]. Here, we found that GT3 and GT4 are also co-circulating in domestic pig populations in Belgium (Fig. 1). Thus, the emergence of GT4, which is thought to be more pathogenic, requires more attention from both public health and patient care perspectives.

Table 1.

HEV prevalence in domestic swine.

Continent Country Anti-HEV antibodies
HEV RNA
Genotype
No. of studies Events Tested (n) Prevalence (%) 95% CI No. of studies Events Tested (n) Prevalence (%) 95% CI
Asia Bangladesh 1 82 100 82.00 73.80–88.98
China 13 7036 15,461 65.73 46.01–82.99 26 1233 19,493 10.40 7.48–13.74 Major GT4; Minor GT3
India 2 297 360 84.02 44.05–100.00 4 30 746 3.35 0.71–7.57 GT4
Indonesia 2 224 307 72.99 67.85–77.84 2 3 307 0.93 0.06–2.48 GT4
Korea 5 162 1294 11.13 4.63–19.85 Major GT3; Minor GT4
Japan 3 327 442 74.33 39.02–97.42 4 82 869 3.01 0.00–13.24 GT3 + GT4
Laos 2 769 899 81.36 26.33–100.00 2 26 455 5.69 0.01–18.78 GT4
Philippines 1 155 299 51.84 46.16–57.49 1 22 299 7.36 4.65–10.62 GT3
Vietnam 1 300 586 51.19 47.14–55.24 1 148 774 19.12 16.42–21.97 GT3
Thailand 1 87 879 9.90 8.01–11.96 1 25 875 2.86 1.85–4.07 GT4
Taiwan 2 82 816 10.17 0.00–43.06 GT3 + GT4
Total 26 9277 19,333 67.45 53.50–79.99 48 1813 25,928 8.23 6.21–10.49
Europe Belgium 1 307 420 73.10 68.74–77.23 1 8 115 6.96 2.91–12.43 GT3 + GT4
Bulgaria 4 652 1049 61.69 48.15–74.38
Croatia 2 524 1484 64.94 8.05–100.00 1 0 469 0.00 0.00–0.37
Czech GT3
Denmark 1 48 97 49.48 39.53–59.45
Estonia 1 234 380 61.58 56.63–66.41 1 103 449 22.94 19.16–26.95 GT3
Finland 1 15 67 22.39 13.11–33.23 GT3
France 3 1785 7814 38.19 9.19–72.96 6 343 5949 15.60 7.61–25.66 GT3
Germany 3 1949 3861 54.79 54.92–77.30 1 3 120 2.50 0.31–6.24 GT3
Greece 1 76 96 79.17 70.41–86.76
Hungary 1 52 248 20.97 16.11–26.27 GT3
Ireland 1 89 330 26.97 22.31–31.90
Italy 6 2961 5737 66.58 54.92–77.30 8 311 2031 19.20 9.68–30.95 GT3
Lithuania 1 168 384 43.75 38.82–48.74 1 106 470 22.55 18.88–26.45
Netherlands 2 775 976 75.23 60.91–87.18 2 55 161 38.90 1.20–88.42 GT3
Norway 1 484 663 73.00 69.55–76.32
Poland 1 63 143 44.06 35.99–52.28 1 5 146 3.42 0.97–7.11
Portugal 1 4 29 13.79 3.21–29.13 2 44 229 7.94 0.00–40.29 GT3
Romania 1 6 19 31.58 12.27–54.50 GT3
Serbia 2 271 654 41.14 28.63–54.25 1 51 330 15.45 11.74–19.57 GT3
Slovenia 2 142 896 15.70 13.36–18.18 GT3
Spain 5 651 1925 49.66 27.37–72.02 5 64 427 11.77 4.72–21.23
Sweden 2 150 603 25.40 18.14–33.42 GT3
Switzerland 2 1281 2199 58.27 56.20–60.33
UK 2 692 805 79.56 42.36–99.54 5 232 1483 19.31 6.05–37.45 GT3
Total 39 12,966 28,949 57.46 49.82–64.93 44 1768 14,422 17.19 13.16–21.61
Oceania New Zealand 1 54 72 75.00 64.28–84.40
New Caledonia 1 6 92 6.52 2.23–12.63 GT3
Total 1 54 72 75.00 64.28–84.40 1 6 92 6.52 2.23–12.63
North America Canada 1 594 998 59.52 56.45–62.55 2 32 200 22.70 0.00–80.63 GT3
Costa Rica 1 19 52 36.54 23.90–50.16 GT3
Mexico 3 964 2055 44.98 27.55–63.07 2 28 130 10.40 0.00–56.02
USA 2 2036 5117 39.73 38.39–41.08 3 366 5256 15.52 3.57–33.50 GT3
Cuba 1 10 53 18.87 9.32–30.65 GT3
Total 6 3594 8170 45.06 35.45–54.86 9 455 5691 18.10 8.71–29.84
South America Argentina 1 22 97 22.68 14.84–31.59 2 59 189 47.03 0.00–100.0 GT3
Brazil 5 1021 1542 60.38 37.62–81.01 7 123 1601 7.19 1.86–15.41 GT3
Uruguay 1 103 220 46.82 40.25–53.44 1 25 150 16.67 11.09–23.09 GT3
Colombia 1 87 250 34.80 29.01–40.83 GT3
Total 7 1146 1859 53.03 33.79–71.81 11 294 2341 15.67 6.75–27.33
Africa Cameroon 2 286 615 46.50 42.56–50.46 1 8 136 5.88 2.45–10.56 GT3
Madagascar 1 178 250 71.20 65.42–76.66 1 3 345 0.87 0.11–2.19 GT3
Nigeria 2 204 406 51.76 41.76–61.70 1 69 90 76.67 67.32–84.89 GT3
Congo 1 1 40 2.50 0.00–10.42 GT3
South Africa 1 7 160 4.38 1.66–8.18
Total 5 668 1271 53.46 43.26–63.52 5 88 771 12.29 0.01–38.70
Overall Global 84 27,705 59,654 59.33 53.64–64.90 118 4424 49,245 12.71 10.81–14.73 GT3 + GT4

Fig. 1.

Fig. 1

Global prevalence of anti-HEV seroprevalence and HEV RNA positivity among domestic swine.

Next, we performed subgroup analysis of pigs at different developmental stages of their life. As expected, the anti-HEV seroprevalence rate increases over time, from 42.19% (95% CI 26.79–58.40, I2 = 97%) in 0–4 month old pigs, 49.27% (95% CI 30.37–68.29%, I2 = 98%) in 5–8 month pigs, to 66.20% (95% CI 55.78–75.89, I2 = 97%) in over 9 month age pigs. In contrast, the positive rate of HEV RNA showed a reverse pattern, with positive rate of 17.62% (95% CI 12.83–22.96, I2 = 91%) in pigs of 0–4 month age, 10.75% (95% CI 4.26–19.51, I2 = 89%) of 5–8 month age, and 6.59% (95% CI 0.86–16.27, I2 = 95%) over 9 month age (Fig. 2, sFigs. 6 and 7).

Fig. 2.

Fig. 2

Subgroup analysis of anti-HEV seroprevalence or HEV RNA positivity.

Considering the clear differences in husbandry and natural habitat between wild and domesticated pigs, we separately estimated HEV prevalence in wild boars. Based on data extracted from 33 studies from 19 countries/territories, we estimated that the overall anti-HEV seroprevalence was 26.82% (95% CI 21.69–32.28, I2 = 98%) (Table 2, sFig. 8). Based on 37 studies from 18 countries/territories, the pooled rate of HEV RNA positivity was 9.45% (95% CI 6.42–12.96, I2 = 96%) (Table 2, sFig. 9).

Table 2.

HEV prevalence in wild boars.

Country Anti-HEV antibodies
HEV RNA
Genotype
No. of studies Events Tested (n) Prevalence (%) 95% CI No. of studies Events Tested (n) Prevalence (%) 95% CI
China 1 186 758 24.52 21.51–27.67
Korea 1 1041 2736 38.05 36.24–39.88 1 24 1859 1.29 0.82–1.86 Major GT4, minor GT3
Japan 6 262 1139 19.26 10.13–30.37 5 93 2609 3.20 2.51–3.95 Major GT3, minor GT4
Thailand 1 1 31 3.23 0.00–13.33 GT3
Bulgaria 1 98 240 40.83 34.68–47.13
Croatia 1 311 1000 31.10 28.27–34.01 1 17 150 11.33 6.70–16.95
Czech 1 31 366 8.47 5.82–11.56
Estonia 1 81 471 17.20 13.92–20.75 1 13 81 16.05 8.77–24.93 GT3
France 2 160 767 21.07 8.35–37.62 2 15 637 2.35 1.28–3.71 GT3
Germany 1 81 180 45.00 37.78–52.33 4 157 701 22.33 3.34–51.18 GT3
Hungary 1 8 75 10.67 4.53–18.80
Italy 6 560 3416 33.59 15.76–54.21 10 232 1697 13.56 6.57–22.46 GT3
Lithuania 1 178 312 57.05 51.51–62.50 1 86 505 17.03 13.87–20.44
Netherlands 1 293 1029 28.47 25.76–31.27 2 8 158 2.67 0.00–14.30
Poland 1 90 290 31.03 25.83–36.49
Portugal 1 24 120 20.00 13.28–27.67 GT3
Romania 1 9 50 18.00 8.41–30.02 GT3
Slovenia 1 87 288 30.21 25.03–35.65 1 1 288 0.35 0.00–1.49
Spain 4 409 1299 41.51 25.30–58.72 2 43 296 14.47 6.48–24.86
Sweden 1 13 159 8.18 4.36–13.00 GT3
Switzerland 1 38 303 12.54 9.03–16.52
Turkey 1 0 93 0 0.00–1.84
EU/multiples 1 12 104 11.54 6.02–18.47 1 4 104 3.85 0.83–8.58
Uruguay 1 31 140 22.14 15.62–29.43 1 13 140 9.29 4.97–14.72
Total 33 3949 14,931 26.82 21.69–32.28 37 761 9660 9.45 6.42–12.96

Given the important role of foodborne transmission, we collected data on HEV RNA detection rates of pork meat, liver and sausage in retailers. This generated pooled positive rate of 9.5% (95% CI 5.14–14.90, I2 = 94%), with 13.27% (95% CI 0.99–35.12, I2 = 98%) in meat, 6.59% (95% CI 1.83–13.49, I2 = 92%) in liver and 11.70% (95% CI 7.62–16.47, I2 = 71%) in sausage (sFig. 10). Sausage production represents a very large industry across the globe, particularly in Europe. Sausages are popular in groceries and sold in a variety of species [18]. We thus further compared the HEV positivity between liver sausage and pork sausage. Notably, we estimated a nearly 3-fold HEV positivity rate of 15.23% (95% CI 11.62–19.21, I2 = 0%) in liver sausage, compared with 5.54% (95% CI 0.19–15.20, I2 = 82%) in pork sausage (Fig. 2, sFigs. 11–12).

Finally, we performed sensitivity analysis for HEV prevalence in domestic pigs and wild boars. In this meta-analysis, no significant change was observed by arbitrarily excluding any study from these groups. This low sensitivity supports the reliability of our estimation. However, funnel plot and Egger's test indicate the presence of publication bias (p > 0.05) in three analyses, including seroprevalence and HEV RNA prevalence among domestic swine, and RNA prevalence among wild boars, which may potentially compromise the accuracy of prevalence estimation (sFigs. 13–26). Another limitation of our study is that we were unable to estimate HEV prevalence in pork products at regional/country levels and clarify the original place of the products, due to limited data available. Because the current food production and supply chains are diverse and complicated; it has become increasingly important to trace the origin of the contaminated products.

In summary, we found nearly 60% domestic pigs and 27% wild boars have ever encountered HEV infection at global level. Nearly 13% domestic and 9.5% wild swine are experiencing active infection. The risk of potential foodborne transmission is highlighted by our estimation that around 10% commercial pork products are HEV RNA positive. However, there remains gaps of translating these knowledge for better understanding the global epidemiology and clinical burden of HEV infection in human population related to zoonotic transmission. Because HEV zoonosis also involves many other factors, including socioeconomic status, farming style, food production and supply, as well as life styles. Nevertheless, our findings have set a stage for future research to further study the role of swine related HEV zoonosis and to facilitate the development of intervention and prevention strategies.

Author contributions

P. L., Z. M. and Q. P.: Project conceptualization. P. L., Y. L. and Y. J.: Data analysis. P. L. and Q. P.: Manuscript writing. Z. M. and Q. P.: supervised the project. All authors reviewed and approved the manuscript.

Ethical approval

The authors confirm that the ethical policies of the journal, as noted on the journal's author guidelines page, have been adhered to.

Data availability statement

All data needed to evaluate the conclusions in the paper are present in the paper and/or the Appendix.

Declaration of Competing Interest

The authors do not have any disclosures to report.

Acknowledgments

Acknowledgement

This research is supported by the Changjiang Scholars and Innovative Research Team in University (No. IRT_17R88) to Z. Ma, the China Scholarship Council for funding PhD fellowship to P. Li (No. 201808370170), and a VIDI grant (No. 91719300) from the Netherlands Organisation for Scientific Research (NWO) to Q. Pan. We greatly thank Dr. Wichor M. Bramer from the Medical Library, Erasmus MC-University Medical Center for conducting the literature search.

Footnotes

Appendix A

Supplementary data to this article can be found online at https://doi.org/10.1016/j.onehlt.2021.100362.

Contributor Information

Zhongren Ma, Email: mzr@xbmu.edu.cn.

Qiuwei Pan, Email: q.pan@erasmusmc.nl.

Appendix A. Supplementary data

Supplementary material

mmc1.pdf (8.1MB, pdf)

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Associated Data

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Supplementary Materials

Supplementary material

mmc1.pdf (8.1MB, pdf)

Data Availability Statement

All data needed to evaluate the conclusions in the paper are present in the paper and/or the Appendix.


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