REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Biological samples | ||
Plasma samples from COVID-19 hospitalised patients (cohort 1) | Manchester hospitals under the framework of the Manchester Allergy, Respiratory and Thoracic Surgery (ManARTS) and the Northern Care Alliance Research Collection (NCARC) | ManARTS Biobank (study no M2020-88, ethics: 15/NW/0409); NCARC tissue biobank (study no. NCA-009; ethics 18/WA/0368). |
Leftover hospital blood samples from hospitalised COVID-19 patients (cohort 2) | York District Hospital, York and Scarborough NHS Trust | REC reference 19/YH/0394 with approved SA002 amendment of IRAS project 269597 |
Critical commercial assays | ||
LEGENDplex™ HU Th Cytokine Panel (12-plex) w/ VbP V02 | BioLegend | Cat #741028 |
LEGENDplex Human Proinflammatory chemokine Panel 1 | BioLegend | Cat #741081 |
LEGENDplex Human CCL5 1-plex | BioLegend | Cat #741083 |
GM-CSF ABTS ELISA kit | Peprotech | |
Norgen Plasma/Serum RNA Purification Mini kit | Norgen | Cat #55000 |
miRNA Taqman assays | Thermo Fischer | Cat #4427975 |
Taqman MicroRNA Reverse Transcription Kit | Thermo Fischer | Cat #4366596 |
Taqman Universal PCR Master Mix | Thermo Fischer | Cat #4305719 |
Nanostring human v3 miRNA for 827 human miRNAs | Nanostring | CSO-MIR3-12 |
Deposited data | ||
Nanostring miRNA data | GEO | GSE189610 |
Software and algorithms | ||
R statistical programming language | The R project | https://r-project.org |
Prism | GraphPad | https://graphpad.com |
Other | ||
StepOnePlus Real Time PCR System | Thermofisher | Cat #4376600 |
nCounter® FLEX Analysis System – nCounter Prepstation | Nanostring Inc | NA |
nCounter® FLEX Analysis System – nCounter Digital Analyser | Nanostring Inc | NA |