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. 2021 Dec 15;109(24):4050–4067.e12. doi: 10.1016/j.neuron.2021.09.037
REAGENT or RESOURCE SOURCE IDENTIFIER
Deposited data

Allen Brain Observatory Neuropixels dataset Allen Brain Institute https://portal.brain-map.org/explore/circuits/visual-coding-neuropixels

Experimental models: Organisms/strains

Rhesus macaque (Macaca mulatta) German Primate Centrum, Germany & Aventis Pharma Deutschland GmbH, Germany NA
Sst-IRES-Cre (SOM-IRES-Cre) mice The Jackson Labaratory Cat#013044
Ai32(RCL-ChR2(H134R)/EYFP) mice The Jackson Labaratory Cat#024109

Software and algorithms

MATLAB (version 2020a) Mathworks https://www.mathworks.com/
FieldTrip Oostenveld et al., 2011 https://www.fieldtriptoolbox.org
Reduced Rank Regression Semedo et al., 2019 https://github.com/joao-semedo/communication-subspace
Stochastic Model of Spiking Neurons Wallace et al., 2011 https://github.com/ewallace/stochsimcode
Python version 3.6 Python Software Foundation https://www.python.org/
AllenSDK pakage (version 2.3.1) Allen Brain Institute https://allensdk.readthedocs.io/en/latest/
Kilosort 2.5 Steinmetz et al., 2021 https://zenodo.org/record/4482749#.YSjX4I4zaUk
Code for SSM model and E/I networks This manuscript https://zenodo.org/record/5507277