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. 2022 Mar 8;55(3):542–556.e5. doi: 10.1016/j.immuni.2022.01.017
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-Human CD69, BUV395 BD Biosciences Cat#564364; RRID: AB_2738770
Anti-human CD8, BUV496 BD Biosciences Cat#612942; RRID: AB_2870223
Anti-Human CD45RA, BUV563 BD Biosciences Cat#612927; RRID: AB_2870212
Anti-Human CD11c, BUV661 BD Biosciences Cat#612968; RRID: AB_2870241
Anti-Human CD56, BUV737 BD Biosciences Cat#612767; RRID: AB_2860005
Anti-Human CD3, BUV805 BD Biosciences Cat#612896; RRID: AB_2870184
Anti-Human IgD, BV421 Biolegend Cat#348226; RRID: AB_2561619
Anti-Human CD16, SuperBright436 ThermoFisher Cat#62-0166-42; RRID: AB_2716985
Anti-Human CD25, eFluor450 ThermoFisher Cat#48-0257-42; RRID : AB_2574011
Anti-Human CD20, BV480 BD Biosciences Cat#566132; RRID: AB_2739531
Anti-Human CD127, BV510 Biolegend Cat#351332; RRID: AB_2562304
Anti-Human HLA-DR, BV570 Biolegend Cat#307638; RRID: AB_2650882
Anti-Human CD28, BV605 Biolegend Cat#302968; RRID: AB_2800755
Anti-Human CD38, BV650 Biolegend Cat#356620; RRID: AB_2566233
Anti-Human CD15, BV711 Biolgend Cat#323050; RRID: AB_2750192
Anti-Human CD279, BV750 Biolegend Cat#329966; RRID: AB_2810505
Anti-Human CD206, BV785 Biolegend Cat#321142; RRID: AB_2734302
Anti-Human CD45, QDOT800 ThermoFisher Cat#Q10156; RRID: AB_1500477
Anti-Human CXCR5, BB515 BD Biosciences Cat#564624; RRID: AB_2738871
Anti-Human CD169, AF488 R&D systems Cat#FAB5197G; RRID: AB_2905550
Anti-Human CD4, Spark Blue 550 Biolegend Cat#344656; RRID: AB_2819979
Anti-Human CD161, PerCP Biolegend Cat#339933;RRID: AB_2563998
Anti-Human CD27, BB700 BD Biosciences Cat#566449; RRID: AB_2739731
Anti-Human Siglec8, PerCP Cy5.5 Biolegend Cat#347108; RRID: AB_2629716
Anti-Human CD86, PerCP eFLuor710 ThermoFisher Cat#46-0869-42; RRID: AB_10596362
Anti-Human CD141, PE Biolegend Cat#344104; RRID: AB_2255842
Anti-Human TCRg/d, PEdz594 Biolegend Cat#331226; RRID: AB_2565534
Anti-Human TCRa/b PE Cy5 Biolegend Cat#306710; RRID: AB_314648
Anti-Human CD11b, PE Cy7 Biolegend Cat#301322; RRID: AB_830644
Anti-Human CD123, APC Biolegend Cat#306012; RRID: AB_439779
Anti-Human CRTH2, AF647 Biolegend Cat#350104; RRID: AB_10642025
Anti-Human CD14, Spark NIR Biolegend Cat#367150; RRID: AB_2820023
Anti-Human CD1c, APC R700 BD Biosciences Cat#566614; RRID: AB_2869794
Anti-Human CD103, APC Cy7 Biolegend Cat#350228; RRID: AB_2734362
Anti-Human CD45, PerCP Cy5.5 ThermoFisher Cat#45-0459-42; RRID: AB_10717530
Anti-Human Siglec8, AF488 R&D systems Cat#FAB7975G; RRID: AB_2905535
Anti-Human CD19, BV421 Biolegend Cat#302234; RRID: AB_11142678
Anti-Human CD4, BV510 Biolegend Cat#317444; RRID: AB_2561866
Anti-Human CD117, BV605 Biolegend Cat#313218; RRID: AB_2562025
Anti-Human CD14, BV711 Biolegend Cat#301838; RRID: AB_2562909
Anti-Human CD16, BV785 Biolegend Cat#302046; RRID: AB_2563803
Anti-Human CD177, FITC Biolegend Cat#315804; RRID: AB_2072603
Anti-Human Siglec8, PE R&D systems Cat#FAB7975P; RRID: AB_2905537
Anti-Human CD56, PEdz594 Biolegend Cat#318348; RRID: AB_2563564
Anti-Human CD3, PE-Cy7 Biolegend Cat#300420; RRID: AB_439781
Anti-Human CD206, APC Biolegend Cat#321110; RRID: AB_571885
Anti-Human FcE, AF700 Biolegend Cat#334630; RRID: AB_2571902

Chemicals, peptides, and recombinant proteins

LIVE/DEAD Fixable NIR Cell Stain ThermoFisher Cat#L34976
LIVE/DEAD Fixable Blue? Cell Stain ThermoFisher Cat#L34961
TruStain FcX Biolegend Cat#422302
RPMI 1640 Gibco Cat#21875091

Critical commercial assays

Target 96 Cardiometabolic Assay Olink Cat#91802
Target 96 CVD II Assay Olink Cat#91202
Target 96 CVD III Assay Olink Cat#91203
Target 96 Immune Response Assay Olink Cat#91701
Target 96 Inflammation Assay Olink Cat#91301
DPP4 ELISA R&D Systems Cat#DY1180
Albumin ELISA Bethyl Laboratories Cat#E80-129
LDH Assay Sigma Aldrich Cat#TOX7
LEGENDplex Human Proinflam. Chemokine Panel 1 Biolegend Cat#740984

Deposited data

Proteomic data and associated clinical and demographic information Dryad https://doi.org/10.5061/dryad.2ngf1vhq3
R code used in analysis of proteomic data Github/Zenodo https://doi.org/10.5281/zenodo.5844957

Software and algorithms

Flowjo version 10.7 software Treestar https://www.flowjo.com
STRING protein module visualisation String https://www.string-db.org
RStudio version 1.2.1335 RStudio https://www.rstudio.com
R version 3.5 R Foundation for Statistical Computing https://www.R-project.org