Antibodies |
|
Anti-Human CD69, BUV395 |
BD Biosciences |
Cat#564364; RRID: AB_2738770
|
Anti-human CD8, BUV496 |
BD Biosciences |
Cat#612942; RRID: AB_2870223
|
Anti-Human CD45RA, BUV563 |
BD Biosciences |
Cat#612927; RRID: AB_2870212
|
Anti-Human CD11c, BUV661 |
BD Biosciences |
Cat#612968; RRID: AB_2870241
|
Anti-Human CD56, BUV737 |
BD Biosciences |
Cat#612767; RRID: AB_2860005
|
Anti-Human CD3, BUV805 |
BD Biosciences |
Cat#612896; RRID: AB_2870184
|
Anti-Human IgD, BV421 |
Biolegend |
Cat#348226; RRID: AB_2561619
|
Anti-Human CD16, SuperBright436 |
ThermoFisher |
Cat#62-0166-42; RRID: AB_2716985
|
Anti-Human CD25, eFluor450 |
ThermoFisher |
Cat#48-0257-42; RRID : AB_2574011
|
Anti-Human CD20, BV480 |
BD Biosciences |
Cat#566132; RRID: AB_2739531
|
Anti-Human CD127, BV510 |
Biolegend |
Cat#351332; RRID: AB_2562304
|
Anti-Human HLA-DR, BV570 |
Biolegend |
Cat#307638; RRID: AB_2650882
|
Anti-Human CD28, BV605 |
Biolegend |
Cat#302968; RRID: AB_2800755
|
Anti-Human CD38, BV650 |
Biolegend |
Cat#356620; RRID: AB_2566233
|
Anti-Human CD15, BV711 |
Biolgend |
Cat#323050; RRID: AB_2750192
|
Anti-Human CD279, BV750 |
Biolegend |
Cat#329966; RRID: AB_2810505
|
Anti-Human CD206, BV785 |
Biolegend |
Cat#321142; RRID: AB_2734302
|
Anti-Human CD45, QDOT800 |
ThermoFisher |
Cat#Q10156; RRID: AB_1500477
|
Anti-Human CXCR5, BB515 |
BD Biosciences |
Cat#564624; RRID: AB_2738871
|
Anti-Human CD169, AF488 |
R&D systems |
Cat#FAB5197G; RRID: AB_2905550
|
Anti-Human CD4, Spark Blue 550 |
Biolegend |
Cat#344656; RRID: AB_2819979
|
Anti-Human CD161, PerCP |
Biolegend |
Cat#339933;RRID: AB_2563998
|
Anti-Human CD27, BB700 |
BD Biosciences |
Cat#566449; RRID: AB_2739731
|
Anti-Human Siglec8, PerCP Cy5.5 |
Biolegend |
Cat#347108; RRID: AB_2629716
|
Anti-Human CD86, PerCP eFLuor710 |
ThermoFisher |
Cat#46-0869-42; RRID: AB_10596362
|
Anti-Human CD141, PE |
Biolegend |
Cat#344104; RRID: AB_2255842
|
Anti-Human TCRg/d, PEdz594 |
Biolegend |
Cat#331226; RRID: AB_2565534
|
Anti-Human TCRa/b PE Cy5 |
Biolegend |
Cat#306710; RRID: AB_314648
|
Anti-Human CD11b, PE Cy7 |
Biolegend |
Cat#301322; RRID: AB_830644
|
Anti-Human CD123, APC |
Biolegend |
Cat#306012; RRID: AB_439779
|
Anti-Human CRTH2, AF647 |
Biolegend |
Cat#350104; RRID: AB_10642025
|
Anti-Human CD14, Spark NIR |
Biolegend |
Cat#367150; RRID: AB_2820023
|
Anti-Human CD1c, APC R700 |
BD Biosciences |
Cat#566614; RRID: AB_2869794
|
Anti-Human CD103, APC Cy7 |
Biolegend |
Cat#350228; RRID: AB_2734362
|
Anti-Human CD45, PerCP Cy5.5 |
ThermoFisher |
Cat#45-0459-42; RRID: AB_10717530
|
Anti-Human Siglec8, AF488 |
R&D systems |
Cat#FAB7975G; RRID: AB_2905535
|
Anti-Human CD19, BV421 |
Biolegend |
Cat#302234; RRID: AB_11142678
|
Anti-Human CD4, BV510 |
Biolegend |
Cat#317444; RRID: AB_2561866
|
Anti-Human CD117, BV605 |
Biolegend |
Cat#313218; RRID: AB_2562025
|
Anti-Human CD14, BV711 |
Biolegend |
Cat#301838; RRID: AB_2562909
|
Anti-Human CD16, BV785 |
Biolegend |
Cat#302046; RRID: AB_2563803
|
Anti-Human CD177, FITC |
Biolegend |
Cat#315804; RRID: AB_2072603
|
Anti-Human Siglec8, PE |
R&D systems |
Cat#FAB7975P; RRID: AB_2905537
|
Anti-Human CD56, PEdz594 |
Biolegend |
Cat#318348; RRID: AB_2563564
|
Anti-Human CD3, PE-Cy7 |
Biolegend |
Cat#300420; RRID: AB_439781
|
Anti-Human CD206, APC |
Biolegend |
Cat#321110; RRID: AB_571885
|
Anti-Human FcE, AF700 |
Biolegend |
Cat#334630; RRID: AB_2571902
|
|
Chemicals, peptides, and recombinant proteins |
|
LIVE/DEAD Fixable NIR Cell Stain |
ThermoFisher |
Cat#L34976
|
LIVE/DEAD Fixable Blue? Cell Stain |
ThermoFisher |
Cat#L34961
|
TruStain FcX |
Biolegend |
Cat#422302 |
RPMI 1640 |
Gibco |
Cat#21875091 |
|
Critical commercial assays |
|
Target 96 Cardiometabolic Assay |
Olink |
Cat#91802 |
Target 96 CVD II Assay |
Olink |
Cat#91202 |
Target 96 CVD III Assay |
Olink |
Cat#91203 |
Target 96 Immune Response Assay |
Olink |
Cat#91701 |
Target 96 Inflammation Assay |
Olink |
Cat#91301 |
DPP4 ELISA |
R&D Systems |
Cat#DY1180 |
Albumin ELISA |
Bethyl Laboratories |
Cat#E80-129 |
LDH Assay |
Sigma Aldrich |
Cat#TOX7 |
LEGENDplex Human Proinflam. Chemokine Panel 1 |
Biolegend |
Cat#740984 |
|
Deposited data |
|
Proteomic data and associated clinical and demographic information |
Dryad |
https://doi.org/10.5061/dryad.2ngf1vhq3 |
R code used in analysis of proteomic data |
Github/Zenodo |
https://doi.org/10.5281/zenodo.5844957 |
|
Software and algorithms |
|
Flowjo version 10.7 software |
Treestar |
https://www.flowjo.com |
STRING protein module visualisation |
String |
https://www.string-db.org |
RStudio version 1.2.1335 |
RStudio |
https://www.rstudio.com |
R version 3.5 |
R Foundation for Statistical Computing |
https://www.R-project.org |