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Frontiers in Oncology logoLink to Frontiers in Oncology
. 2022 Jan 13;11:762629. doi: 10.3389/fonc.2021.762629

Decreased Expression of ACADSB Predicts Poor Prognosis in Clear Cell Renal Cell Carcinoma

Xianhui Liu 1, Weiyu Zhang 1, Huanrui Wang 2, Lin Zhu 1, Kexin Xu 1,*
PMCID: PMC8791850  PMID: 35096573

Abstract

Background

Previous reports have shown that short/branched chain acyl-CoA dehydrogenase (ACADSB) plays an important role in glioma, but its role in clear cell renal carcinoma (ccRCC) has not been reported.

Methods

The TIMER and UALCAN databases were used for pan-cancer analysis. RNA sequencing and microarray data of patients with ccRCC were downloaded from the Cancer Genome Atlas and Gene Expression Omnibus database. The differential expression of ACADSB in ccRCC and normal kidney tissues was tested. Correlations between ACADSB expression and clinicopathological parameters were assessed using the Wilcoxon test. The influences of ACADSB expression and clinicopathological parameters on overall survival were assessed using Cox proportional hazards models. Gene set enrichment analysis (GSEA) was performed to explore the associated gene sets enriched in different ACADSB expression phenotypes. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed on genes with similar expression patterns to ACADSB. Correlations between ACADSB and ferroptosis-related genes were assessed using Spearman’s correlation analysis.

Results

Pan-cancer analysis revealed that ACADSB is down-regulated in multiple cancers, and decreased expression of ACADSB correlates with poor prognosis in certain types of cancer. Differential expression analyses revealed that ACADSB was down-regulated in ccRCC, indicating that ACADSB expression could be a single significant parameter to discriminate between normal and tumor tissues. Clinical association analysis indicated that decreased ACADSB expression was associated with high tumor stage and grade. The Cox regression model indicated that low ACADSB expression was an independent risk factor for the overall survival of patients with ccRCC. GSEA showed that 10 gene sets, including fatty acid (FA) metabolism, were differentially enriched in the ACADSB high expression phenotype. GO and KEGG pathway enrichment analysis revealed that ACADSB-related genes were significantly enriched in categories related to FA metabolism, branched-chain amino acid (BCAA) metabolism, and iron regulation. Spearman’s correlation analysis suggested that the expression of ACADSB was positively correlated with the expression of ferroptosis driver genes.

Conclusions

ACADSB showed good diagnostic and prognostic abilities for ccRCC. The downregulation of ACADSB might promote tumorigenesis and tumor progression by inhibiting FA catabolism, BCAA catabolism, and ferroptosis in ccRCC.

Keywords: renal cancer, ACADSB, prognosis, biomarker, TCGA

Introduction

Short/branched chain acyl-CoA dehydrogenase (ACADSB) is a member of the acyl-CoA dehydrogenase family of enzymes, which is involved in the metabolism of fatty acids (FAs) and branch-chained amino acids (BCAAs) (1). Previous studies have revealed that ACADSB plays an important role in glioma, colorectal cancer (CRC), and hepatocellular carcinoma (HCC) (25). However, the role of ACADSB in clear cell renal cell carcinoma (ccRCC) has not yet been reported.

CcRCC is the most common and aggressive type of renal cell carcinoma (RCC), which accounts for approximately 3% of all cancers and is the third most common malignancy of the urinary system (6, 7). Worldwide, there were an estimated 403,000 new cases of RCC and 175,000 deaths due to kidney cancer in 2020 (8). Among solid tumors, ccRCC is one of the most resistant to conventional chemotherapy and radiotherapy. Targeted therapy and immune checkpoint inhibitor-based immunotherapy have substantially improved the outcomes of patients with advanced ccRCC over the past decade. However, the identification of novel diagnostic markers and therapeutic targets remains a high priority. The aim of this study was to explore the potential diagnostic and prognostic roles of ACADSB in ccRCC.

Materials and Methods

Pan-Cancer Analysis

The tumor immune estimation resource database (TIMER; https://cistrome.shinyapps.io/timer/) (9) and the UALCAN database (http://ualcan.path.uab.edu/index.html) (10) were used for the differential expression analysis of ACADSB between tumor tissues and corresponding normal tissues. TIMER was also applied to explore the association between ACADSB expression and overall survival (OS) in different types of cancers.

Collection of ccRCC Datasets

The RNA sequencing (RNA-seq) data and clinical information of patients with ccRCC (TCGA-KIRC) were downloaded from The Cancer Genome Atlas (TCGA) using the “TCGAbiolinks” R package (11). Only patients with both RNA-seq data and valid clinical information were included in this study, and duplicated samples were excluded. The expression profiling microarray data of GSE36895 (with 29 ccRCC samples and 23 adjacent normal samples) and GSE53757 (with 72 paired ccRCC and adjacent normal samples) were downloaded from Gene Expression Omnibus (GEO) using the “GEOquery” R package (12).

Immunohistochemistry (IHC)

A tissue chip with 90 pairs of ccRCC and corresponding normal tissues was purchased from Outdo Biotech Co., Ltd. (HKidE180Su03, Shanghai, China). The experiment received ethical approval for sample use from Shanghai Outdo Biotech Co., Ltd. (Barcode: YB M‐05‐02). IHC was performed on tissues fixed with formaldehyde and embedded in paraffin wax. After deparaffinization and rehydration, the endogenous peroxidase activity was blocked and antigen retrieval was performed. The ACADSB antibody (13122‐1‐AP, 1:12000; Proteintech, CA) was incubated overnight at 4°C. After careful washing and incubation with the specified horseradish peroxidase (HRP)‐conjugated secondary antibody, ACADSB expression was detected using 3,3N‐ diaminobenzidine tetrahydrochloride (DAB).

The intensity and extent of ACADSB staining were evaluated by two experienced pathologists. The method for calculating the score of ACADSB staining was as follows: the extent of staining in an ×200 field was scored as 0, 0%; 1, 1–25%; 2, 26–50%; and 3, 51–100%. The intensity of staining was scored as 0, no signal; 1, light brown; 2, brown; and 3, dark brown. The final score of each field was the average obtained from the two pathologists by multiplying the extent score by the intent score. The scores of ACADSB staining were categorized as follows: low expression (−/+) for scores 0–1 (−) and 2–3 (+) and high expression (++/+++) for scores 4–6 (++) and 7–9 (+++). All evaluations were performed using a Leica DM4000 M microscope.

Gene Set Enrichment Analysis

Gene-set enrichment analysis (GSEA) (13) was performed with the GSEA software (version 4.0.3). Samples from TCGA were divided into two groups based on the expression of ACADSB. The Broad Molecular Signatures Database (MSigDB v6.0) (14) set H (hallmark gene sets, 50 gene sets) were used, which summarize and represent specific well-defined biological states and pathway processes. Enrichment analysis was performed by default weighted enrichment statistics, with the random combinatorial count set as 1,000. Gene sets were judged as significantly enriched by P<0.05 as well as false discovery rates (FDR) < 0.25.

Correlation, GO and KEGG Pathway Analysis

The genes which had greater than 0.4 Spearman correlation coefficient with ACADSB in expression level were defined as ACADSB-related genes. To explore the functional annotation and involved pathways of ACADSB-related genes, the gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were executed via the “clusterprofiler” package (15).

Statistical Analysis

All statistical analyses were performed in R version 4.1.0. For RNA-seq data, raw counts data were used for differential expression analysis via the “DESeq2” package (16). Fragments per kilobase million (FPKM) values were converted to Transcripts per million (TPM) and log2 transformed for further analysis. For microarray data, differential expression analysis was performed using the “limma” package (17). Genes with an adjusted p value of less than 0.05 and fold change (FC) greater than 2 were regarded as differentially expressed genes (DEGs). The receiver operating characteristic (ROC) curves were plotted and areas under the curve (AUC) were calculated to investigate the diagnostic performance of ACADSB. Patients were stratified into low or high groups based on ACADSB expression, using the median expression as the cut-off value. The relationships between clinical pathologic characteristics and ACADSB expression were analyzed with Chi-squared test or Wilcoxon test. Univariate and multivariate Cox proportional hazards models were used to compare the influence of ACADSB expression on OS along with other clinicopathological parameters. P< 0.05 was considered to indicate a statistically significant difference.

Results

ACADSB Is Down-Regulated in Multiple Cancers and Decreased Expression of ACADSB Correlates With Poor Prognosis in Certain Types of Cancers

Differential expression analysis using TIMER showed that ACADSB is down-regulated in multiple types of cancer, including bladder cancer (BLCA), breast cancer (BRCA), cholangiocarcinoma (CHOL), colon adenocarcinoma (COAD), esophageal carcinoma (ESCA), head and neck squamous cell carcinoma (HNSC), kidney chromophobe (KICH), kidney renal clear cell carcinoma (KIRC), kidney renal papillary cell carcinoma (KIRP), liver hepatocellular carcinoma (LIHC), lung adenocarcinoma (LUAD), lung squamous cell carcinoma (LUSC), rectum adenocarcinoma (READ), stomach adenocarcinoma (STAD), thyroid carcinoma (THCA), and uterine corpus endometrial carcinoma (UCEC; Figure 1A ). Proteome data derived from the UALCAN database also suggest that ACADSB is down-regulated in breast cancer, colon cancer, ccRCC, and UCEC ( Figure 1B ). In addition, Kaplan–Meier analysis indicated that low expression of ACADSB is associated with poor prognosis in BRCA luminal subtype, COAD, KIRC, brain lower grade glioma (LGG), and mesothelioma (MESO) ( Figures 1C–E and Supplementary Figures 1A, B ).

Figure 1.

Figure 1

Pan-cancer analysis of ACADSB. (A) Differential expressions of ACADSB in TCGA. (B) Differential expressions of ACADSB in UALCAN. Overall survivals comparison between high and low ACADSB groups in (C) BRCA-luminal subtype, (D) COAD, and (E) KIRC *p< 0.05; **p<0.01; ***p<0.001.

ACADSB Is Down-Regulated in Different ccRCC Datasets

Transcript differential expression analysis using DESeq2 revealed that ACADSB was significantly down-regulated in ccRCC tissues compared with normal kidney tissues in TCGA-KIRC (log2FC = -2.0, FDR < 0.001; Figure 2A ), GSE36895 (log2FC = -1.7, FDR < 0.001; Figure 2B ), and GSE53757 (log2FC = -2.2, FDR < 0.001; Figure 2C ). Further, ROC analyses showed that ACADSB expression could be a single significant parameter for discriminating between normal and tumor tissues in TCGA-KIRC (AUC = 0.952, 95% CI = 0.926–0.977, Figure 2D ), GSE36895 (AUC = 0.931, 95% CI = 0.862–1.0, Figure 2E ), and GSE53757 (AUC = 0.966, 95% CI = 0.935–0.998, Figure 2F ). A total of 84 paired tumor–normal samples were included in the IHC analysis, with six pairs of samples excluded due to slices escaping from the glass slide. For normal kidney tissues, most samples (75/84, 89.3%) showed high ACADSB expression, while all ccRCC samples (84/84, 100%) showed low ACADSB expression ( Figure 2G ). Typical pictures of staining in paired tumor and normal samples are shown in Figures 2H, I .

Figure 2.

Figure 2

Differential expressions of ACADSB in ccRCC datasets. Volcano plots showing the results of differential analyses in (A) TCGA-KIRC, (B) GSE36895, and (C) GSE53757. ROC curves showing the ability of ACADSB expression to discriminate between normal and tumor tissues in (D) TCGA-KIRC, (E) GSE36895, and (F) GSE53757. (G) The IHC result of ccRCC tissue microarray. Typical pictures of paired (H) tumor and (I) normal tissue.

Clinical Characteristics of Patients With ccRCC in the TCGA-KIRC Cohort

In the TCGA-KIRC cohort, there’re 530 cases with both RNA-seq data and clinical information. Four duplicated cases and 4 cases whose overall survival time was 0 days were excluded. Therefore, a total of 522 patients with both RNA-seq data and valid survival information were included in this study. The detailed clinical characteristics are listed in Table 1 . Patients were divided into a high expression group and a low expression group based on ACADSB expression. Among the 522 participants, 341 (65.3%) were men and 181 (34.7%) were women, with a median age of 61 years at the time of initial diagnosis; 315 (60.7%) patients had stage I or stage II disease pathology, and 204 (39.3%) patients had stage III or stage IV disease pathology. Regarding histological grade, 236 (45.9%) patients were categorized into grade 1 or grade 2, and 278 (54.1%) patients were categorized into grade 3 or grade 4. Follow-up duration was 40 months on average (range, 0.1–151.2 months). At the time of the last follow-up, 344 (68.9%) patients were tumor-free, while 155 (31.1%) patients still had tumors.

Table 1.

Clinical characteristics of patients with ccRCC in TCGA.

Characteristic Low expression High expression p
N 261 261
Sex, n (%) 0.066
 Female 80 (15.3%) 101 (19.3%)
 Male 181 (34.7%) 160 (30.7%)
Pathological T stage, n (%) < 0.001
 T1-2 138 (26.4%) 195 (37.4%)
 T3-4 123 (23.6%) 66 (12.6%)
Pathological N stage, n (%) 0.057
 N0 112 (44.1%) 126 (49.6%)
 N1 12 (4.7%) 4 (1.6%)
Pathological M stage, n (%) < 0.001
 M0 188 (38.2%) 226 (45.9%)
 M1 53 (10.8%) 25 (5.1%)
Pathological stage, n (%) < 0.001
 Stage I-II 125 (24.1%) 190 (36.6%)
 Stage III-IV 133 (25.6%) 71 (13.7%)
Histological grade, n (%) < 0.001
 G1-2 91 (17.7%) 145 (28.2%)
 G3-4 169 (32.9%) 109 (21.2%)
Tumor status, n (%) < 0.001
 Tumor free 138 (27.7%) 206 (41.3%)
 With tumor 112 (22.4%) 43 (8.6%)
Age, median (IQR) 61 (53, 70) 60 (51, 69) 0.423

ccRCC, clear cell renal cell carcinoma; TCGA, The Cancer Genome Atlas; IQR, interquartile range.

Association Between ACADSB Expression and Clinicopathological Characteristics

The relationship between ACADSB expression and clinicopathological characteristics is shown in Figure 3 . ACADSB expression was significantly associated with pathological T stage (T1-2 vs. T3-4, P< 0.001; Figure 3A ), pathological N stage (N0 vs. N1, P< 0.01; Figure 3B ), pathological M stage (M0 vs. M1, P< 0.001; Figure 3C ), pathological stage (stage I-II vs. stage III-IV, P< 0.001; Figure 3D ), tumor grade (grades 1–2 vs. grades 3–4, P< 0.001;  Figure 3E ), tumor status (tumor free vs. with tumor, P< 0.001; Figure 3F ), and sex (P< 0.01; Figure 3G ). The differences between groups stratified by age (<65 years vs. ≥65 years; Figure 3H ) and race (white vs. black or African American vs. Asian; Figure 3I ) did not attain statistical significance.

Figure 3.

Figure 3

The correlation between ACADSB expression and clinicopathological characteristics. (A) Pathological T stage. (B) Pathological N stage. (C) Pathological M stage. (D) Pathological stage. (E) Tumor grade. (F) Tumor status. (G) Sex. (H) Age. (I) Race *p< 0.05; **p<0.01; ***p<0.001.

Survival Outcomes and Cox Regression Analysis

Kaplan–Meier survival analysis showed that lower ACADSB expression was associated with a worse prognosis (P< 0.001; Figure 1E ). The univariate Cox regression model revealed that age at diagnosis (HR = 1.03, 95% CI = 1.017–1.044, P< 0.001), pathological stage (HR = 3.927, 95% CI = 2.847–5.417, P< 0.001), histological grade (HR = 2.679, 95% CI = 1.895–3.787, P< 0.001), and ACADSB expression (HR = 0.421, 95% CI = 0.331–0.535, P< 0.001) were associated with the OS of patients with ccRCC. Multivariate Cox regression after adjustment indicated that age at diagnosis (HR = 1.027, 95% CI = 1.013–1.042, P< 0.001), pathological stage (HR = 2.695, 95% CI = 1.877–3.765, P< 0.001), histological grade (HR = 1.639, 95% CI = 1.137–2.364, P< 0.01), and ACADSB expression (HR = 0.577, 95% CI = 0.446–0.746, P< 0.001) were independent prognostic factors for OS in patients with ccRCC ( Figure 4 and Supplementary Table 1 ).

Figure 4.

Figure 4

Forest plot of hazard ratios derived from Cox model. (A) Univariate analysis. (B) Multivariate analysis.

Gene Sets Enriched in the ACADSB High Expression Phenotype

In the hallmark dataset, 10 gene sets were significantly enriched in the ACADSB high expression phenotype, including TGF-β signaling, androgen response, UV response down, heme metabolism, bile acid metabolism, protein secretion, adipogenesis, FA metabolism, PI3K-AKT-mTOR signaling, and mitotic spindle ( Figure 5 and Supplementary Figure 1C ).

Figure 5.

Figure 5

Enrichment plots from gene set enrichment analysis. Gene sets enriched in ACADSB high phenotype: (A) TGF-β signaling. (B) Androgen response. (C) UV response down. (D) Heme metabolism. (E) Bile acid metabolism. (F) Protein secretion. (G) Adipogenesis. (H) Fatty acid metabolism. (I) PI3K-AKT-mTOR signaling.

GO and KEGG Analysis of ACADSB-Related Genes

In TCGA-KIRC, GSE36895, and GSE53757, 3093, 2111, and 594 respective genes had ACADSB expression with a Spearman correlation coefficient of >0.4. Two hundred and fourteen genes representing the intersection between all three datasets were defined as ACADSB-related genes ( Figure 6A ). At a false discovery rate (FDR) of 0.05, 47 GO biological processes, 13 GO cellular components, 14 GO molecular functions, and 15 KEGG pathways were significantly enriched for these genes ( Figure 6B and Supplementary Table 2 ).

Figure 6.

Figure 6

GO and KEGG enrichment analyses of ACADSB-related genes and correlation between ACADSB with ferroptosis-related genes. (A) Identification of ACADSB-related genes. (B) GO and KEGG enrichment analyses of ACADSB-related genes. (C) Heatmap shows the correlation between ACADSB and ferroptosis driver gens.

ACADSB Expression Was Associated With the Expression of Ferroptosis-Related Genes

Ferroptosis-related genes were derived from the FerrDb database (18). A total of 108 genes were identified as ferroptosis driver genes. Correlation analysis revealed that the expression of ACADSB was significantly positively correlated with the expression of 62 ferroptosis diver genes in the TCGA-KIRC dataset ( Figure 6C ). Similar results were found in GSE36895 and GSE53757 ( Supplementary Figure 1D, E ).

Discussion

ACADSB is a member of the acyl-CoA dehydrogenase family of enzymes that catalyze the dehydrogenation of acyl-CoA derivatives in the metabolism of FAs and BCAAs (1). ACADSB is widely known to be associated with ACADSB deficiency (SBCADD), an autosomal recessive disorder characterized by seizures and psychomotor delay due to a defect in the catabolism of L-isoleucine (19, 20).

Recent studies have found that ACADSB plays an important role in the development and progression of malignant diseases, such as glioma (2), colorectal cancer (3), and hepatocellular carcinoma (HCC) (4, 5). Yu et al. (2) reported that ACADSB is lowly expressed in high-grade gliomas, and the lower expression of ACADSB may lead to the accumulation of short-chain acylcarnitines, which further facilitates the growth and progression of gliomas. Di et al. (3) reported that ACADSB is down-regulated in CRC, and its expression is positively correlated with the OS of patients with CRC. Their study also indicated that overexpression of ACADSB inhibits CRC cell proliferation, migration, and invasion, while knockdown of ACADSB has the opposite effect. Similar results were also found in HCC, in which the restoration of ACADSB expression caused mTORC1 activity and cell proliferation to significantly decrease (4). In this study, we first explored the expression levels of ACADSB in different types of cancer using independent datasets from TCGA and UALCAN. The downregulation of ACADSB was observed in almost all types of common cancer. Moreover, low expression levels of ACADSB also correlate with a poorer prognosis in many types of cancers, such as COAD, LGG, and ccRCC. Previous studies have reported the important role of ACADSB in COAD and LGG; however, it has not been reported in ccRCC. Thus, we focused on the role of ACADSB in ccRCC.

The differential expression analyses were performed in three independent datasets, and consistent results were obtained, indicating that ACADSB is down-regulated in ccRCC, and that ACADSB expression can be a single significant parameter to discriminate between normal and tumor tissues. The IHC results further validated the downregulation of ACADSB in ccRCC. We next investigated the correlation between ACADSB expression and the clinicopathological characteristics of patients with ccRCC using TCGA-KIRC data. Results showed that the level of ACADSB expression was negatively correlated with tumor stage and tumor grade; results also showed that ACADSB expression was an independent prognostic factor for OS independent of conventional prognostic factors, such as age at diagnosis, tumor stage, and tumor grade. These findings indicate an integral role of ACADSB in the underlying biological mechanisms of tumor development and progression of ccRCC.

To further investigate the potential functions of ACADSB in ccRCC, we conducted GSEA, GO, and KEGG analyses. The results of GSEA showed that 10 gene sets in the hallmark dataset, including FA metabolism, bile acid metabolism, heme metabolism, and adipogenesis, were differentially enriched in the ACADSB high expression phenotype. GO and KEGG enrichment analysis indicated that ACADSB-related genes were enriched in the regulation of FA degeneration and BCAA degeneration. Lip metabolism plays a critical role in the development and progression of renal cancer, and ccRCC is histologically defined by its lipid-and glycogen-rich cytoplasmic deposits (21). The tumorigenic role of lipid accumulation has been observed in many types of cancer (22, 23). ACADSB is known to regulate FA catabolism by catalyzing the dehydrogenation of acyl-CoA derivatives (1). Thus, the downregulation of ACADSB may contribute to tumor development by suppressing FA catabolism, resulting in lipid accumulation in ccRCC.

In addition to regulating FA catabolism, ACADSB also catalyzes the dehydrogenation of acyl-CoA derivatives in the metabolism of BCAAs. BCAA metabolism can influence multiple cancer phenotypes and serve as a marker of disease pathology (24). Previous studies have demonstrated that BCAA catabolism is reduced in many types of cancers, such as HCC (4), ccRCC (22), and breast cancer (25). Ericksen et al. (4) found that suppression of BCAA catabolic enzyme expression led to BCAA accumulation in liver tumors and that progressive loss of BCAA catabolism promoted tumor development and growth. Qu et al. (22) reported that BCAA accumulation in ccRCC induced the activation of mTORC1 and de novo FA synthesis and promoted cell proliferation. Therefore, the downregulation of ACADSB may also promote tumor development and growth by inhibiting BCAA catabolism.

Lipid metabolism is important for ferroptosis, an iron-dependent form of regulated cell death (RCD) that is driven by the lethal accumulation of lipid peroxidation (26, 27) and plays a key role in tumor suppression (28). In contrast, the glutathione peroxidase 4 (GPX4)/glutathione (GSH) antioxidation system acts as an endogenous antioxidant pathway to suppress ferroptosis (29, 30). Reduced FA metabolism due to inhibition of β-oxidation renders renal cancer cells highly dependent on the GPX4/GSH pathway to prevent lipid peroxidation and ferroptosis (31). Lu et al. (3) found that overexpression of ACADSB enhanced the concentrations of Fe+ and lipid peroxidation but reduced the concentration of GSH and the expression of GPX4 in CRC cell lines, suggesting a potential regulatory effect of ACADSB on CRC cell ferroptosis. In this study, GSEA indicated that FA metabolism and heme metabolism were enriched in the high-ACADSB phenotype, GO analysis revealed that ACADSB-related genes are enriched in the molecular function of metal cluster binding and iron-sulfur cluster binding, and KEGG analysis revealed that ACADSB-related genes are enriched in the peroxisome pathway. Taken together, these findings indicate the potential regulatory effect of ACADSB on ferroptosis in ccRCC.

Ferroptosis-related genes can be classified as either ferroptosis driver genes that promote ferroptosis or ferroptosis suppressor genes that prevent ferroptosis (18). Correlation analysis revealed that the expression of ACADSB was significantly positively correlated with the expression of ferroptosis driver genes, including PRKAA1, PRKAA2, and NCOA4. Song et al. (32) demonstrated that the inhibition of PRKAA1/AMPKα1 or PRKAA2/AMPKα2 by siRNA diminished erastin-induced BECN1 phosphorylation at S93/96, BECN1-SLC7A11 complex formation, and subsequent ferroptosis. Hou et al. (33) revealed that the genetic inhibition of NCOA4 inhibited ferritin degradation and suppressed ferroptosis. Taken together, ACADSB might also be a potential ferroptosis driver gene, and the downregulation of ACADSB in ccRCC may promote tumor progression by suppressing ferroptosis.

In conclusion, ACADSB is down-regulated in multiple types of cancers and shows good diagnostic and prognostic abilities in ccRCC. Bioinformatic analyses revealed that ACADSB might affect the development and progression of ccRCC by regulating FA catabolism, BCAA catabolism, and ferroptosis. These findings may offer new therapeutic approaches for the clinical treatment and prognostic assessment of ccRCC. However, there were some limitations to this study. This study was mainly conducted using data from the public databases, and the potential regulations between ACADSB and ferroptosis in ccRCC were analyzed by correlation analysis, which needs to be further elucidated by molecular experiments.

Data Availability Statement

Publicly available datasets were analyzed in this study. This data can be found here: https://portal.gdc.cancer.gov/, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36895, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE53757.

Ethics Statement

The studies involving human participants were reviewed and approved by Ethics Committee of Shanghai Outdo Biotech Company Limited. Written informed consent for participation was not required for this study in accordance with the national legislation and the institutional requirements.

Author Contributions

KX and XL conceived the manuscript. XL and WZ designed and wrote the manuscript. HW and LZ helped with the bioinformatic analyses. All authors contributed to the article and approved the submitted version.

Funding

The present study was supported by the National Natural Science Foundation of China (NO. 81970660) from KX.

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary Material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fonc.2021.762629/full#supplementary-material

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Data Availability Statement

Publicly available datasets were analyzed in this study. This data can be found here: https://portal.gdc.cancer.gov/, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36895, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE53757.


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