. 2022 Jan 22;25(2):103798. doi: 10.1016/j.isci.2022.103798

Table 1.

Key portals for accessing publicly available multi-omics datasets

Name	URL	Omic and other data types	Notes
TCGA (Campbell et al., 2020)	https://portal.gdc.cancer.gov/	• Genomics • Epigenomics • Transcriptomics	• Tumor data • Large coverage of tumors
ICGC (Campbell et al., 2020)	https://dcc.icgc.org/	• Genomics • Transcriptomics	• Tumor data • Powerful online analytics tools
CPTAC	https://cptac-data-portal.georgetown.edu/cptacPublic/	• Proteomics	• Tumor data • The largest proteomic data portal
COSMIC Cell Lines (Iorio et al., 2016)	https://cancer.sanger.ac.uk/cell_lines	• Genomics • Epigenomics • Transcriptomics • Drug response • CRISPR-Cas9 screen	• Cancer cell line data • Manually curated • Large coverage of cell lines
DepMap (Broad, 2020)	https://depmap.org/portal/	• Genomics • Epigenomics • Transcriptomics • Proteomics • Drug response • CRISPR-Cas9 screen	• Cancer cell line data • Large coverage of omic types • Powerful online tools
COSMIC (Tate et al., 2019)	https://cancer.sanger.ac.uk/cosmic	• Genomics • Epigenomics • Transcriptomics	• Tumor data • Manually curated • Focus on genomics • Overlap with other portals