With reference to the quoted commentary (1) above, commentators observed, “In sections ‘SI and SIS Models’ and …. chance or probability.” We would like to state that the commentators have misunderstood and misinterpreted the concept and definition of β. From the mentioned models, it may be seen that, β is the per capita per unit time infection rate. It is a disease transmission coefficient or a transmission rate as described by Kirkeby et al. (2). Bailey (3), at page no. 20, and Bailey (4), at page no. 33, have defined β as the infection rate. Chalub and Souza (5) have defined that, β may be interpreted as a rate or as a probability among many other possible choices. Jagan et al. (6) have defined β as the transmission rate; it is the number of infections per unit time per susceptible per infected. Further, Citron et al. (7) have defined as β the transmission rate, published in “PNAS” and others (8–20).
Further, we have mentioned that β estimates the spread rate, which shows the chance of transmission of the disease from an infectious individual to a susceptible one. Ucakan et al. (17) have explicitly expressed that the transmission coefficient, β estimates the probability of getting the disease from an infectious individual to the susceptible and stated it as a probability that ranges from 0 to 1 (0< β <1). On the other hand, Brauer and Castillo-Chavez (21) have defined β as the product of the probability of the transmission per contact and the per capita contact rate. In addition, Chen (22) has also defined β as the infection coefficient, the product of the average number of contacts within a given time period and the probability of infection for the contact between susceptible and infectious individuals. Thus, β may take a value >1 and, therefore, in general, it may not be considered as a probability. Furthermore, one should be very careful about the choice of β while defining diagrams for different epidemiological models. Moreover, Hethcote and Driessche (10) mentioned that the number of new cases per unit time shall be λSI/N, which is called the standard incidence (23–27) with λ as a contact rate. Another common incidence is the simple mass action incidence, βSI, where β was defined as the transmission coefficient (4, 9). Additionally, Okabe and Shudo (16) have defined that βSI represents the number of susceptible individuals that get infected per day. For more details, further references can be consulted (28, 29).
In their next comment, they have wrongly pointed out “In section, “The Distribution Fitting,” the …. biological interpretations.” In the section “The Distribution Fitting” of our review on page no. 04, we have clearly mentioned that “it is the growth rate of infection which determines the total number of infections which depends on the numerous factors (30),” and in the context of distribution fitting, we have mentioned that the infectious disease mainly depends on two factors, namely, the number of carriers and the time of infection as reported by Datta et al. (31). They have further mentioned, “In the section of “The Basic Reproduction Number”…… not the model.” In the section “The Basic Reproduction Number,” the commentators have wrongly stated the concept here. From the formula, it may be observed that, R0 does not depend on time. Further, we have not mentioned R0 as a rate anywhere in the review article. It is solely their imaginary creation. We have mentioned in the section that, R0 is measured through the effective reproductive rate, denoted by R. Thus, we have mentioned, “effective reproductive number” R as “effective reproductive rate” since it depends on time (32–38). Although for minimizing the ambiguity, the use of consistent terminology throughout the literature is required, and, therefore, we appreciate the commentators. Further, commentators have wrongly mentioned that we have stated ξ as a model in the sub-section SIRS on page no. 9, however, ξ is defined in subsection SEIRS on page no. 20. In our opinion, the sentence should be started with the word “In,” which may be a typographical error, however, we have clearly mentioned that ξ is the rate by which the recovered individuals become susceptible because of the loss of immunity, and ξ is not a model. For more details, further references can be referred to (15, 39, 40).
In their last comment, they have pointed out, “In the section, “Further Suggestions and Future Prospectives”, ….. recommendations.” Hajian-Tilaki (41) clearly observed that in designing epidemiologic studies, sample size calculation has an important role to detect an effect and achieve the desired precision in estimates of parameters of the interest (41–45). Therefore, it is a key factor that must be considered while designing the study protocol (45). Small sample size will fail to provide a precise estimate and reliable answers to the policy makers (46). On the other hand, a large sample size than required will cause wastage of useful resources earmarked to the study (45). Malhorta and Indrayan (47) have recorded that, an adequate estimation of the correct required sample size is a must, especially in the case of such infectious diseases, for which the newly invented diagnostic tests are expensive to carry out. For any epidemiological study, the investigators must present the principles of sample size calculation to justify these numbers (44). Further, Hajian-Tilaki (48) also mentioned that, unfortunately, sample size calculations are rarely reported by clinical investigators for diagnostic studies (49, 50). The sample size calculation may be ignored wherever required, for instance, assumptions in household epidemic models for determining the transmissibility (R0). This can sometimes be seen based on who infected whom however, it is only applicable to the infections with a long incubation period, such as AIDS and tuberculosis. Although, for the infections with a shorter incubation period, such as Influenza and COVID-19, we must meet the sample size conditions in order to estimate the growth rate. The commentators mentioned that in the section “Further Suggestions and Future Prospective,” the compulsion of sample size determination can be avoided, however, we opined that, if certain researchers have not mentioned the assumptions regarding the sample size calculation, it does not mean that there is no need of it. Many a time, the determination of sample size is ignored, where strict ethical issues are not concerned, but it will harm in some sense or another, as mentioned by the more pragmatic scholars earlier (45, 46). Thus, it is highly recommended for an epidemiological study that the appropriate sample size calculation should be followed (41, 48, 51–58).
Author Contributions
SY and YA have together prepared the response to the commentary. Both the authors contributed to the article and approved the submitted version.
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher's Note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
References
- 1.Dhungana HN, Ghimire S. Commentary: Statistical modeling for the prediction of infectious disease dissemination with special reference to COVID-19 spread. Front Public Health. (2021) 9:735857. 10.3389/fpubh.2021.735857 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Kirkeby C, Halasa T, Gussmann M, Toft N, Græsbøll K. Methods for estimating disease transmission rates: evaluating the precision of Poisson regression and two novel methods. Sci Rep. (2017) 7:1–11. 10.1038/s41598-017-09209-x [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Bailey NTJ. The Mathematical Theory of Epidemics. London: C. Griffin. RA652 B 3. p. 194. (1957). [Google Scholar]
- 4.Bailey NTJ. The Mathematical Theory of Infectious Diseases, 2nd Edn. New York, NY: Hafner; (1975). [Google Scholar]
- 5.Chalub FACC, Souza MO. Discrete and continuous SIS epidemic models: a unifying approach. Ecol Complex. (2014) 18:83–95. 10.1016/j.ecocom.2014.01.006 [DOI] [Google Scholar]
- 6.Jagan M. deJonge MS, Krylova O'Earn DJD. Fast estimation of time-varying infectious disease transmission rates. PLoS Comput Biol. (2020) 16:e1008124. 10.1371/journal.pcbi.1008124 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Citron DT, Guerra CA, Dolgert AJ, Wu SL, Henry JM, Sanchez CHM, et al. Comparing metapopulation dynamics of infectious diseases under different models of human movement. Proc Natl Acad Sci USA. (2021) 118:e2007488118. 10.1073/pnas.2007488118 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Anderson RM, Medley GP, May RM, Johnson AM. A preliminary study of the transmission dynamics of the human immunodefieiency virus, the causative agent of AIDS. IMA J Math Appl Med Biol. (1986) 3:229–63. 10.1093/imammb/3.4.229 [DOI] [PubMed] [Google Scholar]
- 9.Anderson RM, May RM. Infectious Diseases of Humans: Dynamics and Control. Oxford: Oxford University Press; (1991). [Google Scholar]
- 10.Hethcote HW, Driessche PVD. An SIS epidemic model with variable population size and a delay. J Math Biol. (1995) 34:177–94. 10.1007/BF00178772 [DOI] [PubMed] [Google Scholar]
- 11.Liu M, Röst G, Vas G. SIS model on homogeneous networks with threshold type delayed contact reduction. Comput Math Appl. (2013) 66:1534–46. 10.1016/j.camwa.2013.02.009 [DOI] [Google Scholar]
- 12.Shausan A . (2014) A Model for the Spread of an SIS Epidemic in a Human Population. A thesis submitted for the degree of Doctor of Philosophy, The University of Queensland. [Google Scholar]
- 13.Nakamura GM, Martinez AS. Hamiltonian dynamics of the SIS epidemic model with stochastic fluctuations. Sci Rep. (2019) 9:1584. 10.1038/s41598-019-52351-x [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Xuan W, Ren R, Pare PE, Ye M, Ruf S, Liu Ji. On a network SIS model with opinion dynamics. IFAC PapersOnLine. (2020) 53:2582–7. 10.1016/j.ifacol.2020.12.305 [DOI] [Google Scholar]
- 15.Giordano G, Blanchini F, Bruno R, Colaneri P, Filippo AD, Matteo AD, et al. Modelling the COVID-19 epidemic and implementation of population-wide interventions in Italy. Nat Med. (2020) 26:855–60. 10.1038/s41591-020-0883-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Okabe Y, Shudo A. A mathematical model of epidemics-a tutorial for students. Mathematics. (2020) 8:1174. 10.3390/math8071174 [DOI] [Google Scholar]
- 17.Ucakan Y, Gulen S, Koklu K. Analysing of tuberculosis in turkey through SIR, SEIR and BSEIR mathematical models. Math Comput Model Dyn Syst. (2021) 27:179–202. 10.1080/13873954.2021.1881560 [DOI] [Google Scholar]
- 18.Nepomuceno EG, Peixoto MLC, Lacerda MJ, Campanharo ASLO, Takahashi RHC, Aguirre LA. Application of optimal control of infectious diseases in a model-free scenario. Sn Comput Sci. (2021) 2:405. 10.1007/s42979-021-00794-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Fayeldi T, Dinnullah RNI. Covid-19 sir model with nonlinear incidence rate. J Phys Conf Ser. (2021) 1869:012113. 10.1088/1742-6596/1869/1/012113 [DOI] [Google Scholar]
- 20.Cabrera M, Córdova-Lepe F, Gutiérrez-Jara JP, Vogt-Geisse K. An SIR-type epidemiological model that integrates social distancing as a dynamic law based on point prevalence and socio-behavioral factors. Sci Rep. (2021) 11:10170. 10.1038/s41598-021-89492-x [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Brauer F, Castillo-Chavez C. Basic models in epidemiology. In: Powell TM, Steele JH. editors. Ecological Time Series. Boston, MA: Springer; (1994). p. 410–47. 10.1007/978-1-4615-1769-6_19 [DOI] [Google Scholar]
- 22.Chen D. Modeling the spread of infectious diseases: a review. In: Chen D, Moulin B, Wu J. editors. Analyzing and Modeling Spatial and Temporal Dynamics of Infectious Diseases, 1st Edn. Hoboken, NJ: John Wiley & Sons, Inc. (2014). p. 19–44. [Google Scholar]
- 23.Hethcote HW. Qualitative analysis of communicable disease models. Math Biosci. (1976) 28:335–56. 10.1016/0025-5564(76)90132-2 [DOI] [Google Scholar]
- 24.Hethcote HW. A thousand and one epidemic models. In: Levin SA, ed. Frontiers in Mathematical Biology. New York: SpringerVerlag; (1994). p. 504–15. 10.1007/978-3-642-50124-1_29 [DOI] [Google Scholar]
- 25.Hethcote HW, Van AJW. Epidemiological models with heterogeneous populations: proportionate mixing, parameter estimation and immunization programs. Math Biosci. (1987) 84:85–118. 10.1016/0025-5564(87)90044-7 [DOI] [Google Scholar]
- 26.Mena-Lorca J, Hethcote HW. Dynamic models of infectious diseases as regulators of population sizes. J Math Biol. (1992) 30:693–716. 10.1007/BF00173264 [DOI] [PubMed] [Google Scholar]
- 27.Gao LQ, Hethcote HW. Disease transmission models with density-dependent demographics, J. Math Biol. (1992) 30:717–31. 10.1007/BF00173265 [DOI] [PubMed] [Google Scholar]
- 28.Wu JT, Leung K, Bushman M, Kishore N, Niehus R, de-Salazar PM, et al. Estimating clinical severity of COVID-19 from the transmission dynamics in Wuhan, China. Nat Med. (2020) 26:506–10. 10.1038/s41591-020-0822-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Zou L, Ruan F, Huang H, Hong Z, Yu J, Kang M, et al. SARS-CoV-2 viral load in upper respiratory specimens of infected patients. N Engl J Med. (2020) 382:970–1. 10.1056/NEJMc2001737 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Liang K. Mathematical model of infection kinetics and its analysis for COVID-19, SARS and MERS infection, genetics and evolution. J Mole Epid Evolu Gen Infect Dis. (2020) 82:104306. 10.1016/j.meegid.2020.104306 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Datta R, Trivedi PK, Kumawat A, Kumar R, Bhradwaj I, Kumari N, et al. Statistical modeling of COVID-19 pandemic stages worldwide. Preprints. (2020) 2020:2020050319. 10.20944/preprints202005.0319.v1 [DOI] [Google Scholar]
- 32.Caicedo-Ochoa Y, Rebellón-Sánchez DE, Peñaloza-Rallón M, Cortés-Motta HF, Méndez-Fandiño YR. Effective reproductive number estimation for initial stage of COVID-19 pandemic in Latin American Countries. Int J Infect Dis. (2020) 95:316–8. 10.1016/j.ijid.2020.04.069 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Inglesby TV. Public health measures and the reproduction number of SARS-CoV-2. JAMA. (2020) 323:2186–7. 10.1001/jama.2020.7878 [DOI] [PubMed] [Google Scholar]
- 34.Anderson R, Donnelly C, Hollingsworth D, Vegvari C, Baggaley R, Maddren R. Reproduction number (R) and growth rate (r) of the COVID-19 epidemic in the UK: methods of estimation, data sources, causes of heterogeneity, and use as a guide in policy formulation. The Royal Society. (2020). Available online at: https://royalsociety.org/-/media/policy/projects/set-c/set-covid-19-R-estimates.pdf?la=en-GB&hash=FDFFC11968E5D247D8FF641930680BD6
- 35.Rudiger S, Konigorski S, Rakowski A, Edelman JA, Zernick D, Thieme A, et al. Predicting the SARS-CoV-2 effective reproduction number using bulk contact data from mobile phones. Proc Natl Acad Sci USA. (2021) 118:e2026731118. 10.1073/pnas.2026731118 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Arroyo-Marioli F, Bullano F, Kucinskas S, Rondon-Moreno C. Tracking R of COVID-19: a new real-time estimation using the Kalman filter. PLoS ONE. 16:e0244474. 10.1371/journal.pone.0244474 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Lee Y, Lee DH, Know H-D, Kim C, Lee J. Estimation of the reproduction number of influenza A(H1N1)pdm09 in South Korea using heterogeneous models. BMC Infect. Dis. (2021) 21:658. 10.1186/s12879-021-06121-8 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Thron C, Mbazumutima V, Tamayo LV, Todjihounde L. Cost effective reproduction number based strategies for reducing deaths from COVID-19. J. Math. Ind. (2021) 11:11. 10.1186/s13362-021-00107-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Kucharski A, Russell TW, Diamond C, Liu Y, Edmunds J, Funk S, et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling study. Lancet Infect Dis. (2020) 20:553–8. 10.1016/S1473-3099(20)30144-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Khajanchi S, Bera S, Roy TK. Mathematical analysis of the global dynamics of a HTLV-I infection model, considering the role of cytotoxic T-lymphocytes. Math Comput Simul. (2021) 180:354–78. 10.1016/j.matcom.2020.09.009 [DOI] [Google Scholar]
- 41.Hajian-Tilaki K. Sample size estimation in epidemiologic studies. Caspian J Intern Med. (2011) 2:289–98. [PMC free article] [PubMed] [Google Scholar]
- 42.Detskey AS, Sackett DL. When was a negative clinical trial big enough? How many patients you needed depends on what you found. Arch Intern Med. (1985) 145:709–12. 10.1001/archinte.1985.00360040141030 [DOI] [PubMed] [Google Scholar]
- 43.Houle TT, Penzien DB, Houle CK. Statistical power and sample size estimation for headache research: an overview and power calculation tools. Headache. (2005) 45:414–8. 10.1111/j.1526-4610.2005.05092.x [DOI] [PubMed] [Google Scholar]
- 44.Livingston EH, Cassidy L. Statistical power and estimation of the number of required subjects for a study based on the t-test. J Surg Res. (2005) 126:149–59. 10.1016/j.jss.2004.12.013 [DOI] [PubMed] [Google Scholar]
- 45.Fitzner K, Heckinger E. Sample size calculation and power analysis: a quick review. Diabetes Educ. (2010) 36:701–7. 10.1177/0145721710380791 [DOI] [PubMed] [Google Scholar]
- 46.Jones SR, Carley S, Harrison M. An introduction to power and sample size estimation. Emerg Med J. (2003) 20:453–8. 10.1136/emj.20.5.453 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Malhorta RK, Indrayan A. A simple nomogram for sample size for estimating sensitivity and specificity of medical tests. Indian J Ophthalmol. (2010) 58:519–22. 10.4103/0301-4738.71699 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48.Hajian-Tilaki K. Sample size estimation in diagnostic test studies of biomedical informatics. J Biomed Inform. (2014) 48:193–204. 10.1016/j.jbi.2014.02.013 [DOI] [PubMed] [Google Scholar]
- 49.Bachmann LM, Puhan MA. ter Riet G, Bossuyt PM. Sample size of studies on diagnostic accuracy: literature survey. BMJ. (2006) 332:1127–9. 10.1136/bmj.38793.637789.2F [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50.Bochmann F, Johmson Z, Azuara-Balanco A. Sample size in studies on diagnostic accuracy in ophthalmology: a literature survey. Br J Opthalmol. (2007) 91:898–9000. 10.1136/bjo.2006.113290 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Fosgate GT. Practical sample size calculations for surveillance and diagnostic investigations. J Vet Diagn Invest. (2009) 21:3–14. 10.1177/104063870902100102 [DOI] [PubMed] [Google Scholar]
- 52.Datta S, Funnell K, Ramuscak N. Improving the Sample Size Calculation Process for Peel Health: A Rapid Review of the Evidence. Region of Peel for You. (2012) Available online at: https://www.peelregion.ca/health/library/pdf/Rapid-Review-Sample-Size-Report.pdf (accessed December 11, 2021).
- 53.Jalalian P,. Sample Size Determination for Clinical Trials. (2014). Available online at: https://www.whitman.edu/Documents/Academics/Mathematics/2014/jalalipr.pdf (accessed December 11, 2021).
- 54.Herzog SA, Low N, Berghold A. Sample size considerations using mathematical models: an example with Chlamydia trachomatis infection and its sequelae pelvic inflammatory disease. BMC Infect Dis. (2015) 15:233. 10.1186/s12879-015-0953-5 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Blaizot S, Herzog SA, Abrams S, Theeten H, Litzroth A, Hens N. Sample size calculation for estimating key epidemiological parameters using serological data and mathematical modeling. BMC Med Res Methodol. (2019) 19:51. 10.1186/s12874-019-0692-1 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Wang X, Ji X. Sample size estimation in clinical research from randomized controlled trials to observational studies. Chest. (2020) 158:S12–20. 10.1016/j.chest.2020.03.010 [DOI] [PubMed] [Google Scholar]
- 57.Stevenson MA. Sample size estimation in veterinary epidemiologic research. Front Vet Sci. (2021) 7:539573. 10.3389/fvets.2020.539573 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Wohl S, Giles JR, Lessler J. Sample size calculation for phylogenetic case linkage. PLoS Comput Biol. 17:e1009182. 10.1371/journal.pcbi.1009182 [DOI] [PMC free article] [PubMed] [Google Scholar]