Table 2.
The information of primers in the CNV and mRNA expression test
| Primersa | Sequence | Locationb | Amplified fragment (bp) |
|---|---|---|---|
| DMBT1-CNV |
F: 5′- TGAGCCATAACACAGGCATCTGA-3′ R: 5′- TGGTAATATAAACACCTGGACTCGG-3′ |
Chr26: 42789218–42789415 | 198 |
| BTF3 |
F: 5′- AACCAGGAGAAACTCGCCAA -3′ R: 5′- TTCGGTGAAATGCCCTCTCG -3 |
Chr20: 8044271–8044436 | 166 |
| DMBT1-qPCR |
F: 5′-ACGAGCTACCTCCAATCCCT -3′ R: 5′- TGGTGTCGTTATCCACCTGC -3 |
XM_024985978.1 | 160 |
| MYOG-qPCR |
F: 5′- CGAGTGCCCCTTGAAGACAA -3′ R: 5′- TACACACCTTACACGCCCAC -3 |
NM_001111325.1 | 82 |
| β-actin-qPCR |
F: 5′- GTCATCACCATCGGCAATGAG -3′ R: 5′- AATGCCGCAGGATTCCATG -3 |
NM_173979.3 | 84 |
aPrimers of DMBT1-CNV and BTF3 were used to test the CNV of DMBT1 gene; primers of DMBT1-qPCR, MYOG-qPCR, and β-actin-qPCR were used to test the mRNA expression level
bThe locations were according to the reference genome and mRNA sequence from NCBI database (Assembly Bos_taurus_UMD_3.1.1.)