Introduction
A particular pathotype of Escherichia coli abnormally colonizes the intestinal mucosa of Chron's disease (CD) patients, the adherent-invasive Escherichia coli (AIEC) and most of the studies performed on AIEC support the fact that AIEC play an important role in the etiology of CD, besides genetic and environmental factors.
However, others factors such as epigenetic modifications seem involved in the pathogenesis of CD. Various epigenetic alterations have been observed in patients such as a global lower expression of enzymes involved in the deacetylation of histones, the histone deacetylases (HDAC), compared to healthy controls. Based on these data, we investigated whether AIEC bacteria are able to modulate the epigenomic landscape of the host cell, favoring their own invasion, in order to identify new therapeutic targets to prevent AIEC colonization in CD patients.
Aims & Methods
Our aims were:
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(1)
to investigate the consequences of AIEC infection on histones post-translational modifications in intestinal epithelial cells (IECs) in culture using western blot analysis;
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(2)
to assess the role of HDAC in the AIEC invasion process by studying their activity during the course of infection and by evaluating the AIEC invasion ability in Caco-2 cells treated with a specific pan-HDAC inhibitor (SAHA) and in cells transfected with a siRNA targeting HDAC1. Finally, we aimed at identifying:
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(3)
additional human proteins used by AIEC to favor invasion of IECs by studying the HDAC regulated genes through a RNA-seq analysis in cells silenced for HDAC1.
The genes potentially involved in the invasion process have then been silenced with specific siRNA in order to propose new therapeutic target for CD patients.
Results
AIEC infection significantly increased H3K9 acetylation level, which was associated to a global decrease in HDAC activity in Caco-2 cells. Chemical inhibition of HDAC as well as specific silencing of HDAC1 resulted in increased invasion of cells by AIEC demonstrating the crucial role of HDAC1 in the control of bacterial invasion. We identified HDAC1 regulated genes by performing a RNA-seq analysis in cells silenced for HDAC1. Particularly, 149 genes were up-regulated while 199 genes were downregulated upon HDAC1 silencing.
Among the up-regulated genes, we focused on 3 genes which could be involved in the better ability of AIEC to invade IECs in a HDAC1-deficient context: RDX and INPPL1, involved in ruffle formation, and EMP2 (epithelial membrane protein), coding for a protein regulating the cell membrane composition. Specific silencing of these genes in Caco-2 cells revealed that only EMP2 silencing decreased the invasion ability of diverse AIEC strains while a better ability of AIEC to invade Caco-2 cells has been observed in cells over-expressing this gene, demonstrating the involvement of EMP2 in the AIEC invasion process.
Conclusion
This work demonstrates that AIEC infection modulate the epigenetic landscape of host cell through the decrease of HDAC1 activity, leading to gene expression changes favoring the AIEC infection process. Targeting HDAC1-regulated genes, such as EMP2, could represent new interesting therapeutic approach to limit AIEC colonization in CD patients carrying these bacteria.
Disclosure
Nothing to disclose
