TABLE I.

Non-Command Line–based Tools for Analyzing scRNA-seq Data.

Analysis tool	Description	URL
Loupe Cell Browser (10x Genomics)	Allows for cell cluster analysis and finding significant genes of interest. To be used with the 10x genomics platform.	https://support.10xgenomics.com/single-cell-gene-expression/software/overview/welcome
Basespace (Illumina)	Cloud computing to manage, analyze and share data; including scRNA-seq (cluster analysis and gene expression visualization).	https://www.fluidigm.com/softwarehttps://www.basespace.illumina.com/
SINGuLAR (Fluidigm)	Identification of gene expression and cluster analysis. To be used with the Fluidigm platform.	https://www.fluidigm.com/software
scRNA-seq workbench (gEAR portal, RRID:SCR_017467)	Initial analysis of scRNA-seq datasets, including quality control, PCA, tSNE/UMAP, cluster analysis, comparing gene expression.	https://www.umgear.org