Table 2.
SNP | Study | n | Age (Range) | Ethnia (Country) | HWE | LMA Status (%) | Chemotherapy Scheme | Clinical Outcomes |
---|---|---|---|---|---|---|---|---|
ABCB1 | ||||||||
C3435T rs1045642 |
Illmer et al., 2002 [51] | 405 | 53 (17–78) |
Caucasian (Germany) |
Yes | De novo | Ara C+ MIT + ETOP + AMSA |
|
Kaya et al., 2005 [52] | 28 | 36 (20–64) |
Arabs (Turkey) |
NR | NR | Ara C + ANT |
|
|
Kim DH et al., 2006 [53] | 81 | 39 (15–72) |
Asian (South Korea) |
Yes | De novo | Ara C + IDA |
|
|
Van der Holt et al., 2006 [54] 1 | 150 (130) | 67 (60–85) |
Caucasian (Netherlands) |
No | De novo: 79Secondary: 21 | Ara C + DAUNO |
|
|
Hur et al., 2008 [55] | 200 | 44 (NR) | Asian (South Korea) |
Yes | De novo | Ara C + ANT |
|
|
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
|
Green et al., 2012 [57] | 100 | 63 (20–85) |
Caucasian (Europe) |
Yes | De novo (normal karyotype) | Ara C + ANT or MIT +/or Others |
|
|
Scheiner et al., 2012 [58] 2 | 109 (44) | 34 (<1–86) |
Others: White (69.7%) Non-white (30.3%) |
No | De novo: 72.5Secondary: 18.3 | Ara C + IDA |
|
|
Falk et al., 2014 [59] 3 | 201 | 59 (18–85) |
Caucasian (Sweden) |
Yes | De novo (normal karyotype) | Ara C + DAUNO or IDA ± ETOP +/or Others |
|
|
He et al., 2014 [60] | 215 | 43.6 (14–57) |
Asian (China) |
Yes | De novo | Ara C (high doses) |
|
|
He et al., 2015 [61] | 263 | 45.4 (14–58) |
Asian (China) |
Yes | De novo (intermediate cytogenetic risk) | Ara C + DAUNO ± MIT |
|
|
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
|
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
|
Short et al., 2020 [64] | 104 | 68 (24–88) |
Caucasian (86%) Black (13%) |
NR | AML 82De novo: 43.9Secondary: 56.1 | GO + DAC |
|
|
G2677T/A rs2032582 |
Van den Heuvel et al., 2001 [65] | 30 | 34.6 (1–67) |
Caucasian (Netherlands) |
NR | Relapsed: 100 | Ara C + ANT + Others |
|
Illmer et al., 2002 [51] | 405 | 53 (17–78) |
Caucasian (Germany) |
Yes | De novo | Ara C+ MIT + ETOP + AMSA |
|
|
Kaya et al., 2005 [52] | 28 | 36 (20–64) |
Arabs (Turkey) |
NR | NR | Ara C + ANT |
|
|
Kim DH et al., 2006 [53] | 81 | 39 (15–72) |
Asian (South Korea) |
Yes | De novo | Ara C + IDA |
|
|
Van der Holt et al., 2006 [54] 1 | 150 (142) | 67 (60–85) |
Caucasian (Netherlands) |
Yes | De novo: 79Secondary: 21 | Ara C + DAUNO |
|
|
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
|
Kim YK et al., 2010 [66] | 94 | 38 (17–79) |
Asian (South Korea) |
NR | De novo (t (8,21) and inv (16)) | Ara C + IDA +BH-AC |
|
|
Green et al., 2012 [57] | 100 | 63 (20–85) |
Caucasian (Europe) |
Yes | De novo (normal karyotype) | Ara C + ANT or MIT +/or Others |
|
|
Falk et al., 2014 [59] 3 | 201 | 59 (18–85) |
Caucasian (Sweden) |
Yes | De novo (normal karyotype) | Ara C + DAUNO or IDA ± ETOP +/or Others |
|
|
He et al., 2014 [60] | 215 | 43.6 (14–57) |
Asian (China) |
Yes | De novo | Ara C (high doses) |
|
|
He et al., 2015 [61] | 263 | 45.4 (14–58) |
Asian (China) |
Yes | De novo (intermediate cytogenetic risk) | Ara C + DAUNO ± MIT |
|
|
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
|
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
|
C1236T rs1128503 |
Illmer et al., 2002 [51] | 405 | 53 (17–78) |
Caucasian (Germany) |
Yes | De novo | Ara C+ MIT + ETOP + AMSA |
|
Van der Holt et al., 2006 [54] 1 | 150 (115) | 67 (60–85) |
Caucasian (Netherlands) |
Yes | De novo: 79Secondary: 21 | Ara C + DAUNO |
|
|
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
|
Kim YK et al., 2010 [66] | 94 | 38 (17–79) |
Asian (South Korea) |
NR | De novo (t (8,21) and inv (16)) | Ara C + IDA +BH-AC |
|
|
Green et al., 2012 [57] | 100 | 63 (20–85) |
Caucasian (Europe) |
Yes | De novo (normal karyotype) | Ara C + ANT or MIT +/or Others |
|
|
Scheiner et al., 2012 [58] 2 | 109(44) | 34 (<1–86) |
Others: White (69.7%) Non-white (30,3%) |
Yes | De novo: 72.5Secondary: 18.3 | Ara C + IDA |
|
|
Falk et al., 2014 [59] 3 | 201 | 59 (18–85) |
Caucasian (Sweden) |
Yes | De novo (normal karyotype) | Ara C + DAUNO or IDA ± ETOP +/or Others |
|
|
He et al., 2014 [60] | 215 | 43.6 (14–57) |
Asian (China) |
No | De novo | Ara C (high doses) |
|
|
He et al., 2015 [61] | 263 | 45.4 (14–58) |
Asian (China) |
Yes | De novo (intermediate cytogenetic risk) | Ara C + DAUNO ± MIT |
|
|
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
|
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
|
Short et al., 2020 [64] | 104 | 68 (24–88) |
Caucasian (86%) Black (13%) |
NR | AML 82De novo: 43.9Secondary: 56.1 | GO + DAC |
|
|
G1199A rs2229109 |
Green et al., 2012 [57] | 100 | 63 (20–85) |
Caucasian (Europe) |
Yes | De novo (normal karyotype) | Ara C + ANT or MIT +/or Others |
|
Falk et al., 2014 [59] 3 | 201 | 59 (18–85) |
Caucasian (Sweden) |
Yes | De novo (normal karyotype) | Ara C + DAUNO or IDA ± ETOP +/or Others |
|
|
C174967T rs6980101 |
Kim YK et al., 2007 [67] | 49 | 37 (17–69) |
Asian (South Korea) |
NR | De novo (t (8,21) and inv (16)) | Ara C + IDA |
|
G146792C rs10256836 |
Kim YK et al., 2007 [67] | 49 | 37 (17–69) |
Asian (South Korea) |
NR | De novo (t (8,21) and inv (16)) | Ara C + IDA |
|
T134575A rs17327442 |
Kim YK et al., 2007 [67] | 49 | 37 (17–69) |
Asian (South Korea) |
NR | De novo (t (8,21) and inv (16)) | Ara C + IDA |
|
A113516G rs4148732 |
Kim YK et al., 2007 [67] | 49 | 37 (17–69) |
Asian (South Korea) |
NR | De novo (t (8,21) and inv (16)) | Ara C + IDA |
|
C193T rs121918619 |
Monzo et al., 2006 [67] | 110 | 44 (16–60) |
Caucasian (Spain) |
Yes | De novo (intermediate cytogenetic risk) | Ara C + IDA + ETOP |
|
Illet144Met | Monzo et al., 2006 [68] | 110 | 44 (16–60) |
Caucasian (Spain) |
NR | De novo (intermediate cytogenetic risk) | Ara C + IDA + ETOP |
|
rs3842 (A>G) |
Cao et al., 2017 [20] | 206 | 67.2 (22–98) |
Asian (China) |
Yes | De novo | Ara C + ANT |
|
rs2235015 (G>T) |
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) | Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
rs2235033 (T>C) |
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
rs1922242 (A>T) |
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
rs1922240 (T>C) |
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
rs1989830 (C>T) |
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
rs2235040 (G>A) |
Rafiee et al., 2019 [63] | 942 | 9.7 (0–30) |
Caucasian (81%) Black (13%) Asian (5%) Others (1%) |
Yes | De novo | Ara C + IDA + ETOP ± GO |
|
ABCB11 | ||||||||
rs4668115 (G>A) |
Drenberg et al., 2016 [13] 4 | 164 | 9.1 (0–21) |
White (70%) Black (20%) Others (10%) |
Yes | De novo | Ara C + DAUNO + ETOP + MIT |
|
ABCC1 | ||||||||
T2684C | Mahjoubi et al., 2008 [82] | 111 | NR | Arabs (Iran) |
NR | 52 AMLNR | NR |
|
C2007T rs2301666 |
Mahjoubi et al., 2008 [82] | 111 | NR | Arabs (Iran) |
NR | 52 AMLNR | NR |
|
G2012T rs45511401 |
Mahjoubi et al., 2008 [82] | 111 | NR | Arabs (Iran) |
NR | 52 AMLNR | NR |
|
C2665T | Mahjoubi et al., 2008 [82] | 111 | NR | Arabs (Iran) |
NR | 52 AMLNR | NR |
|
T825C rs246221 |
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
T1062C rs35587 |
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
G4002A rs2230671 |
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
rs4148350 (G>T) |
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
rs129081 (C>G) |
Kunadt et al., 2020 [83] 5 | 160 | 46 (18–60) |
Caucasian (Germany) |
Yes | NK AMLDe novo: 93.1Secondary: 6.9 | Ara C + DAUNO |
|
rs212090 (A>T) |
Cao et al., 2017 [20] | 206 | 67.2 (22–98) |
Asian (China) |
Yes | De novo | Ara C + ANT |
|
Kunadt et al., 2020 [83] 5 | 160 | 46 (18–60) |
Caucasian (Germany) |
Yes | NK AMLDe novo: 93.1Secondary: 6.9 | Ara C + DAUNO |
|
|
rs212091 (A>G) |
Cao et al., 2017 [20] | 206 | 67.2 (22–98) |
Asian (China) |
Yes | De novo | Ara C + ANT |
|
Kunadt et al., 2020 [83] 5 | 160 | 46 (18–60) |
Caucasian (Germany) |
Yes | NK AMLDe novo: 93.1Secondary: 6.9 | Ara C + DAUNO |
|
|
rs3743527 (C>T) |
Cao et al., 2017 [20] | 206 | 67.2 (22–98) |
Asian (China) |
Yes | De novo | Ara C + ANT |
|
rs4148380 (G>A) |
Cao et al., 2017 [20] | 206 | 67.2 (22–98) |
Asian (China) |
Yes | De novo | Ara C + ANT |
|
ABCC2 | ||||||||
G4544A rs8187710 |
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
ABCC3 | ||||||||
45 + 1226 (T>G) rs4148405 |
Yee et al., 2013 [16] 6 | 154 | NR | Caucasian (Europe) |
NR | NR | Ara C + ETOP + BUSUL (pre-TX) |
|
Butrym et al., 2021 [85] | 95 | 61 (22–90) |
Caucasian (Poland) |
Yes | De novo | Ara C + DAUNO or low dose Ara C or AZA |
|
|
rs1989983 (G>A) |
Yee et al., 2013 [16] 6 | 54 | NR | Caucasian (Europe) |
NR | NR | Ara C + ETOP + BUSUL (pre-TX) |
|
rs2301835 (C>T) |
Yee et al., 2013 [16] 6 | 154 | NR | Caucasian (Europe) |
NR | NR | Ara C + ETOP + BUSUL (pre-TX) |
|
rs2277624 (A>G) |
Yee et al., 2013 [16] 6 | 154 | NR | Caucasian (Europe) |
NR | NR | Ara C + ETOP + BUSUL (pre-TX) |
|
rs8079740 (A>G) |
Yee et al., 2013 [16] 6 | 154 | NR | Caucasian (Europe) |
NR | NR | Ara C + ETOP + BUSUL (pre-TX) |
|
rs757420 (T>C) |
Yee et al., 2013 [16] 6 | 154 | NR | Caucasian (Europe) |
NR | NR | Ara C + ETOP + BUSUL (pre-TX) |
|
C211T rs4793665 |
Müller et al., 2008 [18] | 139 | 46.3 (15–86) |
Jews (61.2%) Arabs (38.8%) |
Yes | De novo | Ara C + ANT ± FLUDA ± MIT |
|
Butrym et al., 2021 [88] | 95 | 61 (22–90) |
Caucasian (Poland) |
Yes | De novo | Ara C + DAUNO or low dose Ara C or AZA |
|
|
ABCG2 | ||||||||
G34A rs2231137 |
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
NR | De novo: 75Secondary: 25 | Ara C + ANT |
|
Wang et al., 2011 [97] | 141 | 32 (5–70) |
Asian (China) |
NR | De novoMixed with ALL | Ara C + DAUNO/MITO |
|
|
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
|
C421A rs2231142 |
Müller et al., 2008 [18] | 139 | 46.3 (15–86) |
Jews (61.2%) Arabs (38.8%) |
Yes | De novo | Ara C + ANT ± FLUDA ± MIT |
|
Hampras et al., 2010 [56] | 261 | 61.5 (20–85) |
Caucasian (86%) Others (14%) (USA) |
Yes | De novo: 75Secondary: 25 | Ara C + ANT |
|
|
Wang et al., 2011 [97] | 141 | 32 (5–70) |
Asian (China) |
NR | De novoMixed with ALL | Ara C + DAUNO/MITO |
|
|
Tiribelli et al., 2013 [98] | 125 | 59.2 (20–84) |
Caucasian (Italy) |
Yes | NR | Ara C + IDA + FLUDA ± ETOP |
|
|
Megías-Vericat et al., 2017 [62] | 225 | 52.5 (16–78) |
Caucasian | Yes | De novo | Ara C + IDA |
|
|
Ile619Ile (C>T) |
Wang et al., 2011 [97] | 141 | 32 (5–70) |
Asian (China) |
NR | De novoMixed with ALL | Ara C + DAUNO/MITO |
|
rs2231149 (C>T) |
Wang et al., 2011 [97] | 141 | 32 (5–70) |
Asian (China) |
NR | De novoMixed with ALL | Ara C + DAUNO/MITO |
|
rs2231162 (C>T) |
Wang et al., 2011 [97] | 141 | 32 (5–70) |
Asian (China) |
NR | De novoMixed with ALL | Ara C + DAUNO/MITO |
|
rs2231164 (C>T) |
Wang et al., 2011 [97] | 141 | 32 (5–70) |
Asian (China) |
NR | De novoMixed with ALL | Ara C + DAUNO/MITO |
|
Abbreviations: ALL: acute lymphoblastic leukemia; AML: acute myeloid leukemia; AMSA: amsacrine; ANT: anthracycline; AZA: azacitidine; BH-AC: N4-behenoyl-1D-arabinofuranosycytosine; BUSUL: busulfan; CIR: cumulative incidence of relapse; CR: complete remission; DAC: decitabine; DAUNO: daunorubicin; DFS: disease-free survival; EFS: event-free survival; ETOP: etoposide; FLUDA: fludarabine; GO: gemtuzumab ozogamicin; HWE: Hardy–Weinberg equilibrium; IDA: idarubicin; MIT: mitoxantrone; NK: normal karyotype; NR: not reported; ORR: overall response rate; OS: overall survival; RFS: relapse-free survival; RR: rate of relapse; R/R: relapse/refractory; TX: hematologic transplant. 1—Allele frequency and treatment outcomes only reported in 115 patients for C1236T, 142 patients for G2677T/A and 130 patients for C3435T. 2—Allele frequency only reported in 103 patients and treatment outcomes only in 44 patients (AML M3 subtype, secondary AML and patients with comorbidities or poor performance status were excluded). 3—A total of 100 patients were previously collected and published in Green et al., 2012 [57]. 4—This study [13] analyzed 1936 SNPs of 225 genes with a multi-SNP-based approach (including ABC and SLC transporters). Only SNPs with significant results were cited. 5—This study [83] included 48 SNPs within 7 genes of 7 ABC transporters (ABCA2, ABCA3, ABCB1, ABCB2, ABCB5, ABCB7 and ABCC1), but only specified the SNPs with significant effect. 6—This study [16] analyzed 1659 SNPs of 42 genes with a multi-SNP-based approach. Only SNPs with significant results were cited.