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. 2022 Apr 20;604(7907):749–756. doi: 10.1038/s41586-022-04638-9

Extended Data Fig. 2. Development of RP-6306 and comparison of PKMYT1i, WEEi and CDK2i.

Extended Data Fig. 2

a, Chemical structure of RP-6421, an analog of RP-6306 b, Dose-response of RP-6421 on PKMYT1 catalytic activity as measured with ADP-Glo kinase assay. c, d, Cell culture of FT282-hTERTTP53R175H CCNE1-high cells were treated with the indicated doses of RP-6306 and AZD-1775 for 24 h. Left, cellular extracts were prepared and immunoprecipitated (IP) with agarose-coupled CDK1 (c) or CDK2 (d) antibodies. Immunoprecipitates were subjected to in vitro kinase assays using [γ32P]-ATP and recombinant histone H1 as a substrate. Reactions were resolved by SDS-PAGE and gels were imaged using a phosphor screen. A sample of each immunoprecipitate was immunoblotted (IB) with CDK1 or CDK2 antibodies. CDK1i (RO-3306) or CDK2i (PF-06873600) was added to indicated in vitro reactions. Right, quantitation 32P-H1 band intensity. Data are shown as mean ± s.d. (n = 3) and P value was determined by one-sided sum-of-squares f-test. e, HCC1569 cells were treated with the indicated doses of RP-6306 for 2 h and subjected to the AlphaLISA assay using CDK1-pT14, CDK1-pY15 and total CDK1 antibodies. Data are shown as mean ± s.d. (n = 3). f, FT282-hTERT TP53R175H parental and CCNE1-high cells were treated with the indicated doses of RP-6306 and AZD-1775 for 4 h. Whole cell lysates were prepared and immunoblotted with antibodies against CDK1-pT14, CDK1-pY15, CDK1 and vinculin as a loading contol. Representative of two immunoblots. g,h,k, EC50 determination for growth inhibition for the parental and CCNE1-high cells in the (g) RPE1-hTERT TP53 −/− Cas9 (RPE1) (h) FT282 TP53R175H (FT282) and (k) indicated cancer cell lines treated with the indicated compounds. Growth was monitored with an Incucyte for up to 6 population doublings. Data are shown as mean ± s.d. (n = 3). In (k) cell lines are also grouped according to their CCNE1 or BRCA status and the red bar indicates the mean of each grouping. i, Whole cell lysates of FT282-hTERT TP53R175H parental and CCNE2-2A-GFP expressing cells were immunoblotted with cyclin E2 and KAP1 specific antibodies. Representative of two immunoblots. j, Clonogenic survival of FT282-hTERT TP53R175H CCNE2-2A-GFP (CCNE2) and WT parental cells treated with RP-6306. Shown on top are representative images of plates stained with crystal violet and bottom is the quantitation. Data are shown as mean ± s.d. (n = 3). For gel source data, see Supplementary Fig. 1.

Source data