Abstract
Linear electron flow (LEF) and cyclic electron flow (CEF) compete for light-driven electrons transferred from the acceptor side of photosystem I (PSI). Under anoxic conditions, such highly reducing electrons also could be used for hydrogen (H2) production via electron transfer between ferredoxin and hydrogenase in the green alga Chlamydomonas reinhardtii. Partitioning between LEF and CEF is regulated through PROTON-GRADIENT REGULATION5 (PGR5). There is evidence that partitioning of electrons also could be mediated via PSI remodeling processes. This plasticity is linked to the dynamics of PSI-associated light-harvesting proteins (LHCAs) LHCA2 and LHCA9. These two unique light-harvesting proteins are distinct from all other LHCAs because they are loosely bound at the PSAL pole. Here, we investigated photosynthetic electron transfer and H2 production in single, double, and triple mutants deficient in PGR5, LHCA2, and LHCA9. Our data indicate that lhca2 and lhca9 mutants are efficient in photosynthetic electron transfer, that LHCA2 impacts the pgr5 phenotype, and that pgr5/lhca2 is a potent H2 photo-producer. In addition, pgr5/lhca2 and pgr5/lhca9 mutants displayed substantially different H2 photo-production kinetics. This indicates that the absence of LHCA2 or LHCA9 impacts H2 photo-production independently, despite both being attached at the PSAL pole, pointing to distinct regulatory capacities.
Alteration of the light-harvesting composition of photosystem I impacts photosynthetic electron transfer and hydrogen production.
Introduction
Oxygenic photosynthesis drives the conversion of solar energy into chemical energy and building material. The accompanied production of oxygen and the assimilation of carbon dioxide largely determines the composition of Earth’s atmosphere and surface (Nelson and Yocum, 2006). This energy conversion process is catalyzed by four multi-subunit membrane protein complexes, which are embedded into thylakoid membranes of cyanobacteria and chloroplasts of eukaryotic photosynthetic organism: photosystem I (PSI), photosystem II (PSII), the cytochrome (Cyt) b6f complex, and ATPase (Nelson and Yocum, 2006). Among these complexes, PSI possesses the most negative redox potential in nature. PSI is a light-driven plastocyanin: ferredoxin (FDX) oxidoreductase. Electron transfer from FDX to the FDX NADPH oxidoreductase (FNR) results in the formation of NADPH, that is the final product of linear electron flow (LEF). Alternatively, FDX may be involved in re-directing electron transfer into Cyt b6f complex and/or NADPH oxidases (Joliot and Joliot, 2006; Yamamoto et al., 2011). The resulting cyclic electron flow (CEF) will provide an ATP poise and protect the PSI acceptor side from over-reduction. CEF around PSI was first recognized by Arnon (1959). However, its mechanistic mode of action is not yet clear. CEF may involve the direct reduction of plastoquinone (PQ) via a NAD(P)H dehydrogenase (NDH)-dependent electron transfer. In Chlamydomonas reinhardtii this is catalyzed by a type II NAD(P) dehydrogenase (NDA2) (Jans et al., 2008; Desplats et al., 2009). Alternatively, in chloroplasts, a PROTON-GRADIENT REGULATION5 (PGR5)-related pathway (Shikanai, 2007; Alric, 2010; Peltier et al., 2010) may be involved in PQ reduction or in a direct reduction of a quinone bound to the Qi site of Cyt b6f by combined electron transfer from its proximal heme ci and an FNR bound to the complex (Joliot et al., 2004; Buchert, 2020). Remodeling processes of PSI, including proteins of the PSI-associated light-harvesting complex (LHCI) may also be involved in partitioning of LEF and CEF. Indeed, there is evidence of a protein supercomplex composed of PSI-LHCI, LHCII, the Cyt b6f complex, and FNR isolated from C. reinhardtii (Iwai et al., 2010). Recently, additional structural data provided evidence for a PSI-Cyt b6f supercomplex (Steinbeck et al., 2018). In this work, formation of a PSI-Cyt b6f supercomplex was linked to the remodeling of PSI-associated light-harvesting proteins (LHCAs), particularly via unbinding of LHCA2 and LHCA9 from PSI. LHCA2 and LHCA9 occupy LHC binding sites at the PSAL pole, which have been identified in PSI structures from red and green algae (Ozawa et al., 2018; Pi et al., 2018; AntoshviLi et al., 2019; Kubota-Kawai et al., 2019; Qin et al., 2019; Su et al., 2019; Suga et al., 2019). While PSI from vascular plants contains 4 LHCs (Mazor et al., 2015, 2017; Qin et al., 2015; Pi et al., 2018), the PSI of green algae may contain up to 10 LHCs; 2 at the PSAL pole and up to 8 arranged in two crescents at the PSAF pole (pointing toward the lumen) (Ozawa et al., 2018; Kubota-Kawai et al., 2019; Qin et al., 2019; Su et al., 2019; Suga et al., 2019). Notably, a resembling organization was also reported in vascular plants, where an additional LHCA1–A4 dimer was found to be bound on the PSAL side of Arabidopsis thaliana (Crepin et al., 2020), suggesting that this mode of organization is also shared with vascular plants. In a recent cryogenic electron microscopy study, Naschberger et al. (2021) identified a PSI dimer from C. reinhardtii where two copies of LHCA9 tethered two monomeric PSI in a head-to-head fashion, forming a large oligomeric protein complex. In this structure, LHCA2 and PSAH were absent. This further underpins the potential role of LHCA2 and LHCA9, both binding at the PSAL pole, in functional remodeling of PSI. LHCA2 and LHCA9 are also involved in the formation of a PSI–LHCI–LHCII complex (Pan et al., 2021). A schematic view on PSI remodeling processes is provided (please see below).
Functional remodeling of PSI may also be involved in hydrogen photo-production in C. reinhardtii, where FDX1 donates photosynthetic electrons to a chloroplast localized hydrogenase (HYDA) that produces H2 (Happe et al., 2002). H2 photo-production in the green alga is observed under sulfur deprivation (Nagy et al., 2018; Melis et al., 2000), which leads to substantial degradation of the photosynthetic apparatus, including PSII. This induces anoxia and expression of the hydrogenase enzyme HYDA, initiating H2 photo-production for several days. In a different strategy, a light pulse protocol was developed, which allowed H2 production at high light-to-H2 conversion efficiency supporting H2 production during the light cycles (Kosourov et al., 2018). To minimize the inhibitory effect of O2 on HYDA activity and thereby sustain high H2 photo-production, low O2 concentration level can be accomplished by employing an iron-salt based O2 absorbent in the headspace (Nagy et al., 2018) or adding a mixture of ascorbate and copper to the alga culture (Khosravitabar and Hippler, 2019). Different C. reinhardtii mutant strains have been identified which produce significantly more H2 as compared to respective wild-type (WT) strains (Toth and Yacoby, 2019). Notably, most prominent H2 photo-production in C. reinhardtii was observed in a PGR5-deficient mutant, both under sulfur deprivation as well as under anoxia (Steinbeck et al., 2015; Nagy et al., 2021), indicating a strong link between the capacity of H2 production and regulation of photosynthetic electron transfer.
In this article, we provide evidence that deletion of LHCA2 impacts PGR5-dependent regulation of photosynthetic electron transfer and boosts light-driven H2 production in a pgr5 KO mutant. These results are discussed in the framework of PSI remodeling processes, where LHCA2 and LHCA9 appear to play regulatory functions.
Results
Generation and proteomic analyses of lhca2, lhca9, and pgr5 single, double, and triple mutant strains
To test the genetic interaction between pgr5 (Johnson et al., 2014) and lhca2 and lhca9 (Li et al., 2016), lhca2, lhca9, and pgr5 single mutants were genetically back-crossed three times using WT cc124/cc125 cells. After successful backcrosses, pgr5/lhca2 and pgr5/lhca9 double and pgr5/lhca2/lhca9 triple mutants were generated by additional rounds of genetic crossings. To verify the mutant status, all strains were analyzed by mass spectrometry-based peptide and protein quantification. According to label-free quantification (LFQ), PGR5 was absent in the single pgr5 as well as in the double and triple mutants. LHCA2 protein was found to be five-fold diminished in the single lhca2 mutant as compared to WT cc124, while the LHCA2 protein was nearly absent in the double and triple mutants. The presence of LHCA2 in the lhca2 insertion mutant can be rationalized as the DNA insertion in the lhca2 gene is located in an intron. Furthermore, other LHCA (LHCA9, LHCA7, LHCA1, and LHCA8), PSI (PSAD), and PSII (PSBA) polypeptides were quantified by LFQ. It appeared that these proteins were rather diminished in the pgr5/lhca2 double mutant. For LHCA9, PSAD, and PSBA, these differences were significant as compared to WT cc124 (Figure 1, C, G, and H). PSAD and PSBA were also less abundant in lhca9, pgr5/lhca9 double and pgr5/lhca2/lhca9 triple mutants (Figure 2, G and H). Mass spectrometric LFQ analyses confirmed that lhca9, pgr5/lhca9, and pgr5/lhca2/lhca9 were deficient in LHCA9 and revealed that, besides LHCA9, LHCA2 was also absent in lhca9 and pgr5/lhca9 (see Figure 2). This indicates that LHCA9 was present in the absence of LHCA2, but that LHCA2 required LHCA9 for accumulation.
Figure 1.
LFQ of PGR5, LHCA2, LHCA9, LHCA7, LHCA1, LHCA8, PSAD, and PSBA proteins in Chlamydomonas WT cc124, single mutants lhca2, pgr5, and double mutant pgr5/lhca2. A, PGR5 protein abundance; (B–F) LHCI proteins LHCA2, LHCA9, LHCA7, LHCA1, and LHCA8, respectively. G and H, photosystems I and II proteins PSAD and PSBA, respectively. All strains were grown in TAP medium at 25°C in normal light conditions with light intensities in 60 µmol photons m−2 s−1. LFQ intensities of PGR5, LHCA2, LHCA9, LHCA1, LHCA8, PSAD, and PSBA protein abundances are expressed as means (±standard deviation (sd)) from four independent biological replicates. Statistical significance was based on one-way ANOVA with different letters (a–c) indicating significant differences (Benjiamini–Hochberg corrected FDR < 0.05). The abbreviation nd means that proteins were not detected.
Figure 2.
LFQ of PGR5, LHCA2, LHCA9, LHCA7, LHCA1, LHCA8, PSAD, and PSBA proteins in Chlamydomonas WT cc124, single mutants pgr5 and lhca9, double mutant pgr5/lhca9, and triple mutant pgr5/lhca2/lhca9. A, Protein abundance of PGR5; (B–F) LHCI proteins LHCA2, LHCA9, LHCA7, LHCA1, and LHCA8, respectively. G and H, PSAD and PSBA are one of PSI and PSII proteins, respectively. All strains were grown in TAP medium at 25°C under normal light conditions with light intensities in the range of 60 µmol photons m−2 s−1. The LFQ intensities of PGR5, LHCA2, LHCA9, LHCA1, LHCA8, PSAD, and PSBA are presented as means (±sd) from at least three independent biological replicates. The abbreviation nd means that proteins were not detected. The letters a–d indicate statistically significant difference with Benjiamini–Hochberg corrected FDR < 0.05.
Hydrogen photo-production of lhca2, lhca9, and pgr5 single, double, and triple mutant strains
As pgr5 is a very potent H2 producer under anoxia (Steinbeck et al., 2015; Khosravitabar and Hippler, 2019; Nagy et al., 2021), we questioned whether H2 photo-production is altered in the double and triple mutants. Therefore, after growth under photo-heterotrophic conditions, mutant strains as well as WT cc124 were shifted to sulfur deficiency to measure their capacity to evolve H2. Continuous H2 photo-production was measured with two independent measuring systems (Figures 3 and 4). The first approach used sealed 500-mL flasks with a gas collection apparatus similar to that previously reported (Figure 3, A–C;Steinbeck et al., 2015). The total H2 gas production of the different strains in the sealed 500-mL flasks is shown in Figure 3A. WT cc124 and lhca2 evolved <100 mL of gas in the course of 8 d, while pgr5, pgr5/lhca9, pgr5/lhca2/lhca9, and pgr5/lhca2 produced significantly more with averaged values of 391, 400, 484, and 894 mL H2 per L culture, respectively. In this setting, pgr5/lhca2 produced the most H2, which was significantly different as compared to the other strains (Figure 3B). The H2 photo-production in pgr5/lhca2 advanced fast and reached 200 mL of H2 after only 2 d. This trend was also observed in pgr5/lhca2/lhca9 (Figure 3C). In both strains, H2 photo-production was significantly more advanced from 48 h to at least 144 h as compared to pgr5 and pgr5/lhca9. Notably, pgr5 and pgr5/lhca9 only started to produce H2 after 48 h (cf. Figure 3, B and C). The H2 production in pgr5, pgr5/lhca9, and pgr5/lhca2/lhca9 mutant strains was not significantly different. It is of note that the pgr5/lhca9 as well as pgr5/lhca2/lhca9 slowed down in producing H2 at 96 h, which is earlier than in pgr5 and pgr5/lhca2 (Figure 3, B and C). In the second approach, we took advantage of a BlueSens gas measuring system (BluesSens GmbH, Herten, Germany). H2 production from 1 L of culture was measured under constant stirring in a gas tight glass fermenter that was equipped with three gas sensors (H2, O2, CO2, BluesSens GmbH, Herten, Germany) constantly recording the composition of the headspace (in Vol%) (Figure 4, see also Supplemental Figure S1). In the BlueSens setup (Figure 4), measurements were focused on pgr5 and pgr5/lhca2. In a timeframe of 12 d, pgr5 and pgr5/lhca2 produced on average 321- and 890-mL H2 per L culture, respectively (Figure 4). Thus, in the two distinct operating systems, the pgr5/lhca2 strain produced significantly more hydrogen than pgr5 (Figures 3 and 4).
Figure 3.
Long-term hydrogen (H2) production of WT cc124, pgr5, lhca2, pgr5/lhca2, pgr5/lhca9, and pgr5/lhca2/lhca9 mutants in 500-mL Schott bottles. A, Total H2 volume produced by the mutants on WT cc124 background. B and C, Comparison of time course H2 production between double mutant pgr5/lhca2 and single mutant pgr5, and double mutant pgr5/lhca9 and triple mutant pgr5/lhca2/lhca9, respectively. The cultures were grown at 15 mg Chl L−1 in 500 mL Schott bottles with one-side illumination (60 µmol photons m−2 s−1). H2 production was measured every 24 h until 192 h under TAP-S medium. Data are expressed as mean (±sd) of 3 ≤ n ≤ 5 biological replicates. Statistical significance (P ≤ 0.05) based on one-way ANOVA with post-hoc test Turkey (A), Student’s test (t test), and Mann–Whitney U for (B) and (C) with different letters indicating significant difference.
Figure 4.

Long-term hydrogen (H2) production in 1L BlueSens gas measuring system. H2 evolution of pgr5 single mutant and pgr5/lhca2 double mutants. Total H2 production by single mutant pgr5 and double mutant pgr5/lhca2 is shown. The values are expressed as mean of 3 ≤ n ≤ 5 independent replicates (± sd). The cultures were started at 15 mg Chl L−1 and H2 production were measured over 285 h with continuous light 60 µmol photons m−2 s−1 under four sides illumination. Statistical significance (P ≤ 0.05) according to Student’s test (t test) with different letters indicating significant difference.
Membrane inlet mass spectrometry of pgr5/lhca2 and pgr5 mutant strains
To assess H2 photo-production in pgr5 and pgr5/lhca2 production in different scenario, we measured H2 production as well as CO2 uptake under ambient conditions using membrane inlet mass spectrometry (MIMS) (Figure 5). Cells of pgr5/lhca2, and pgr5 mutant strains as well as WT cc124 were grown under photo-heterotrophic conditions, dark-adapted for 1 h and shifted to a light intensity of 370-µmol photons m−2 s−1 for 16 min, followed by a strong light pulse of 2,500-µmol photons m−2 s−1 for 2 min and another dark phase. In this experimental setup, H2 production after light onset and light pulse was by far highest in pgr5/lhca2 as compared to the two other strains (Figure 5A). After 16 min, pgr5/lhca2 had accumulated >500 µM of H2, while pgr5 and WT cc124 accumulated only about 80 and 10 µM of H2, respectively (Figure 5B). This revealed that under such particular conditions pgr5/lhca2 is indeed a potent H2 producer. In contrast, CO2 uptake started in the WT cc124 immediately after the onset of light and was boosted by the strong light pulse. In pgr5, only minor net CO2 uptake was observed after the light was turned on (Figure 5C). Yet, upon the strong light pulse, CO2 uptake is seen but to a lower extent as compared to WT. In pgr5/lhca2, the onset of light resulted rather in a CO2 release, while the strong light pulse caused a miniscule CO2 uptake in this strain. Rates of CO2 assimilation in high light and CO2 release in the dark were determined (Figure 5D) and revealed that in the light CO2 uptake was significantly faster in the WT as compared to pgr5 and pgr5/lhca2, while CO2 release rates were similar between the strains.
Figure 5.
Short-term hydrogen (H2) production and CO2 assimilation and release. Short-term kinetics of dissolved H2 (A) and CO2 (C) measured by MIMS. Cc124, pgr5/lhca2, and pgr5 cells at a concentration of 15 µg Chl mL−1 were incubated in the dark for 2 h, after which they were exposed to 16 min of illumination (370 µmol photons m−2 s−1; white background) followed by 2 min of high light (2,500 µmol photons m−2 s−1; yellow background). B, Absolute values of the H2 [µmol] accumulated after 16 min of continuous illumination, shown as bars graph. D, The rates of CO2 assimilation in high light and afterwards its release in the dark (yellow and gray background, respectively). Mean values and sd bars are shown (n = 3). For B and D, pgr5/lhca2 was found statistically distinct from pgr5 and cc124 where indicated with the stars, analyzed by two-tailed t test (P < .05).
Assessing photosynthetic electron transfer capacities
In a next set of experiments, we explored the photosynthetic electron transfer capacity in the WT and mutant strains under oxic and anoxic photo-autotrophic conditions. We measured total electron transfer rates (ETRs) in cells, which were grown at low light intensities at 7- to 15-µmol photons m−2 s−1. For determining the ETR (see Materials and methods), the electrochromic shift (ECS) signals were measured using a Joliot-type spectrophotometer. In brief, all absorption changes were normalized to the ECS ΔI/I signals (520–546 nm) produced after a saturating laser flash in the presence of 1-mM hydroxylamine (HA) and 10-µM 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU). Thus, the flash-induced rapid ECS describes the density of active PSI centers in PSII-inhibited HA/DCMU samples (measured as 1 charge separation.PSI−1). The ECS was also deconvoluted using the dark pulse method (reviewed in Joliot and Joliot, 2002; Bailleul et al., 2010; Nawrocki et al., 2019) and ETRs were calculated (the electron transfer measurement scheme is shown in Supplemental Figure S2). The ETR are shown for a 10-s illumination period after 20 min of dark adaptation (Supplemental Figure S3). As 20 min of darkness likely affected the redox state of the PQ pool due to reduction via Nda2 (Desplats et al., 2009), an additional 700-ms short dark period was introduced, which was followed by another 10-s illumination period and measurement of ETRs (Figure 6). The latter measurements were a better representation for electrons solely stemming from photosynthesis-driven electron transfer. The ETR measured after 20 min of dark adaption Supplemental Figure S3 as well as after the second short 700-ms dark phase (Figure 6), are characterized by an initial 300-ms phase of photosynthetic induction where rates were first high and then declined, followed the establishment of a steady state. Overall, initial ETRs were more advanced after 20 min of dark adaption. Notably, ETRs in the lhca2 mutant were significantly higher in oxic conditions (part I in Supplemental Figure S3; Figure 6) as compared to WT cc124, pgr5, and pgr5/lhca2 (respective parts E and A in Supplemental Figure S3; Figure 6). This was also true after DCMU treatment (parts B and F in Supplemental Figure S3; Figure 6) although the lhca2 strain outperformed WT cc124 significantly only at two time points after long and short dark adaptation (Supplemental Figure S3J; Figure 6J). Under anoxic conditions, ETRs in pgr5 and pgr5/lhca2 were significantly lower in steady state after the 20-min dark adaptation (Supplemental Figure S3, C and G), while after the second short dark phase, these differences in comparison to WT cc124 were even evident in the initial photosynthetic induction phase (Figure 6, C and G). DCMU treatment did only impact ETR in pgr5, where differences to WT cc124 were observed at two time points (Figure 6H). Interestingly, under anoxia, the ETR in pgr5/lhca2 in the presence of DCMU was significantly faster than in pgr5 (seen for 13 time points). Under oxic conditions, this significant difference was observed for four time points (Figure 7, A and B). Notably, the ECS measurements provided evidence that the overall photosynthetic electron transfer in lhca2 was more advanced than in WT cc124 under oxic conditions. This was also evident for ETR in the presence of DCMU in oxic conditions, which has been already observed for lhca2 with regard to WT (Steinbeck et al., 2018). In addition, we measured the redox state of P700 in lhca2 and WT cc124 under oxic conditions according to an established protocol based on the method by (Klughammer and Schreiber, 1994) (Figure 8). While YI (the photo-oxidizable P700 fraction after 10 s in the light) was similar between lhca2 and WT cc124, acceptor side (YNA) and donor side limitation (YND) were significantly different. In this setting, YNA was smaller and YND was larger in lhca2 as compared to WT cc124. The P700 redox parameters are interdependent and considering the higher ETRs in oxic lhca2 versus WT cc124, detection of an elevated YND was not limiting the overall electron transfer under these conditions in the presence of oxidized PSI electron acceptors pools.
Figure 6.
The second consecutive ETR measurement via the dark pulse method is shown for the strains pgr5/lhca2, pgr5, lhca2, and WT cc124. The ETR was produced after a 700-ms short dark-phase and is expressed as charge separations.s-1.PSI-1 (c.s/s/PSI), after the measurement presented in Supplemental Figure S3 (for reference of the measurement routine, see also Supplemental Figure S2). A, E, and I, ETR in oxic condition (B), (F), (J), ETR in oxic conditions and in the presence of DCMU. C, G, and K, ETR in anoxic conditions, (D), (H), (L) ETR in anoxic conditions and in the presence of DCMU. Each time point is an average of at least three biological replicates (±sd) with statistical comparisons analyzed by Student’s t test (*P ≤ 0.05).
Figure 7.

The second consecutive electron transfer rate (ETR) measurement via the dark pulse method is shown for the strains pgr5/lhca2 and pgr5 after a 700-ms dark phase. The ETRs, expressed as charge separations.s-1.PSI-1 (c.s/s/PSI), were produced in oxic (A) and anoxic conditions (B) after DCMU treatment, as presented in Figure 6 (for reference of the measurement routine, see also Supplemental Figure S2). Each time point is an average of at least three biological replicates (±sd) with statistical comparisons analyzed by Student’s t test (*P ≤ 0.05).
Figure 8.

P700 deconvolution between WT cc124 and lhca2 under oxic conditions. The photo-oxidizable P700 fractions (YI), nonoxidizable P700 because of acceptor side limitation (YNA), and pre-oxidized P700 due to donor-side limitation (YND) were examined before and after the addition of DCMU for three biological replicates. By employing a one-way ANOVA with Turkey post hoc test (P < 0.05), the data for each group are presented as an average (±sd) with different letters indicating statistical significance.
As indicated above, ETR in pgr5/lhca2 in the presence of DCMU was significantly increased under anoxia, denoting that the absence of LHCA2 seemed to rescue the ETR in the presence of DCMU in the pgr5 mutant. This suggests that LHCA2 might act as a suppressor of PGR5 function in electron transfer regulation under conditions, where PSII activity is blocked. We also measured the redox state of P700 in all four strains under anoxia (Supplemental Figure S4). As previously observed (Buchert et al., 2020), YNA and YND were significantly different in WT cc124 and prg5, where WT had a pronounced YNA, which was considerably smaller in pgr5. On the other hand, YND was significantly larger in pgr5 than in WT. Here, in regard to YNA and YND, lhca2 and pgr5/lhca2 followed WT and pgr5, respectively. Concerning the DCMU-treated samples, no significant differences in YI and YND were observed in the strains. YND was similar in lhca2 versus WT cc124 in the absence of DCMU, yet considerably increased in pgr5/lhca2 and pgr5. As mentioned, high YND allowed fast ETR in lhca2 when PSI electron acceptor pools were not saturated under oxic conditions. In contrast, the total ETRs in anoxic cells were significantly diminished in the high-YND strains pgr5/lhca2 and pgr5, suggesting that detection of elevated YND becomes limiting for overall electron transfer once cells are in a reducing environment which otherwise favors YNA.
We also measured ETR in lhca9 as well as pgr5/lhca9. Interestingly, the ECS measurements revealed that, as seen in lhca2, ETR in lhca9 is significantly faster than in WT cc124 under oxic conditions (Supplemental Figure S5). In contrast to lhca2, ETR in lhca9 was not significantly different under anoxia and DCMU after the second short dark phase as compared to WT cc124 and rates were already similar to the pgr5 strain after 100 ms. In this regard, LHCA9 did not seem to suppress the PGR5 ETR phenotype under anoxia and DCMU.
Discussion
In this work, we provide evidence that both the lhca2 and lhca9 mutants revealed high photosynthetic ETR in oxic conditions, that LHCA2 impacts the pgr5 phenotype and that pgr5/lhca2 is a potent H2 producer. In addition, pgr5/lhca2 and pgr5/lhca9 revealed significantly different H2 photo-production kinetics, indicating that the absence of LHCA2 or LHCA9 impact H2 photo-production independently, pointing to distinct regulatory capacities.
Efficient hydrogen production in pgr5/lhca2
The pgr5 mutant has been described as an effective H2 producer with maximal production of about 800-mL H2 per L algal culture (Steinbeck et al., 2015). To study the genetic interaction between the pgr5 and lhca2 and lhca9 mutations, all mutants were back-crossed in the cc124/125 genetic backgrounds, and double mutants as well as the triple mutant were generated. In the altered genetic background, the pgr5 mutant produced between 330 and 390 mL H2. This is significantly less than in the T222 parental background (Steinbeck et al., 2015), indicating that the genetic background influences the pgr5 phenotype. Yet, H2 photo-production was still more than seven-fold higher as compared to the respective WT, as shown before (Steinbeck et al., 2015) (Figure 3A). The addition of the lhca2 mutation to pgr5 boosted H2 photo-production back to almost 900 mL of H2 in both gas measurement systems (Figures 3 and 4), being more than 17-fold higher as compared to WT. This 17-fold increase in H2 photo-production is a substantial improvement, as compared to other described mutants (Toth and Yacoby, 2019). Moreover, the MIMS measurements under ambient conditions revealed, that pgr5/lhca2 outperformed pgr5 significantly (Figure 5), despite ETR in pgr5/lhca2 and pgr5 being very similar, yet slower as compared to WT (Figure 6). The slower ETR rates can be likely explained with the finding that electron transfer in a pgr5 genetic background is donor side limited as the turn-over of the Cyt b6f complex is slowed down in pgr5 (Buchert et al., 2020).
PSI remodeling may result in stromal electron rerouting toward hydrogenase
How can the improved H2 production of pgr5/lhca2 be rationalized? Under oxic condition, the ETR in lhca2 and lhca9 was enhanced, but not under anoxia, where H2 was produced. Under anoxia, hydrogenase competes successfully for PSI electrons that originate from H2O via LEF or from CEF processes. Although H2 photo-production is strongly PSII-dependent (Antal et al., 2003; Kosourov et al., 2003; Fouchard et al., 2005; Hemschemeier et al., 2008), CEF contributes as well because it limits electron flow into the vast stromal space. Thereby, controlling the local transfer pathway of an electron by cycling between PSI and Cyt b6f may favor its interception by hydrogenase (Yacoby et al., 2011; Eilenberg et al., 2016). Importantly, the entanglement of CEF and H2 production under physiological conditions is presently unknown, owing to the methodical bottleneck of assessing CEF without inhibiting PSII activity. However, pgr5/lhca2 improved ETR in regard to pgr5 under anoxia in the presence of DCMU (Figure 7), suggesting CEF processes in the highly potent H2 producer pgr5/lhca2. In fact, ETR in the presence of DCMU is linked to the capacity of CEF, as it is solely driven by electron transfer between PSI and the cyt b6f complex. This is in line with increased CEF in lhca2 under oxic DCMU conditions (Steinbeck et al., 2018). It has been suggested that the absence of LHCA2 and LHCA9 might promote CEF by the formation of a PSI–Cyt b6f complex supercomplex, according to the low-resolution structural data devoid of LHCA2 and LHCA9 (Steinbeck et al., 2018). Interestingly, our data also indicate that the total ETR, that is, the combination of LEF together with CEF, was transiently enhanced in the absence of LHCA2 and LHCA9 when hydrogenase was not a competent electron sink due to oxygen in the sample (Supplemental Figures S3, 5, and 6; Figure 6). A possible enhancement of CEF contributions to the total ETR in lhca2 is also in line with an increased donor side limitation (Figure 8), as CEF would further acidify the lumen resulting in an augmented photosynthetic control (Stiehl and Witt, 1969).
As shown, LHCA2 did not accumulate in the absence of LHCA9, while LHCA9 was present in the absence of LHCA2 (Figures 1 and 2). In agreement, PSI particles isolated from a lhca2 mutant contained LHCA9, but PSI particles isolated from a LHCA9 deficient strain did not possess LHCA2 (Naschberger et al., 2021). A recent cryo-electron microscopy structural study identified two LHCA9 copies as the key elements for the dimerization of PSI from C. reinhardtii (Naschberger et al., 2021). In the dimeric PSI structure, LHCA2 is absent. Thus, the absence of LHCA2 could promote the formation of PSI-dimers, while the absence of LHCA2 and LHCA9 could support the formation of a PSI–cyt b6f complex supercomplex (Steinbeck et al., 2018). The formation of a state II PSI–LHCI–LHCII complex, where two LHCII trimers are linked per PSI (Huang et al., 2021; Pan et al., 2021), is hampered in the absence of LHCA2 and LHCA9 (Naschberger et al., 2021). Yet, under anoxia, where State II is more likely, ETR in lhca2 and lhca9 was not increased in the same way as under oxic conditions (Supplemental Figure S3, 5, and 6; Figure 6). This makes changes in state transitions and/or light-harvesting antenna composition not a likely reason for differences in LEF and amount H2 produced. The increase of CEF in anoxia and DCMU in pgr5/lhca2, however, could be related to PSI remodeling and the potential formation of PSI-dimers, which would be favored in the absence of LHCA2. Moreover, the increased robustness of pgr5/lhca2 in H2 production as compared to pgr5/lhca9 and pgr5/lhca2/lhca9 might be linked to PSI-remodeling. It also indicates that the increase in H2 production in pgr5/lhca2 cannot simply be explained by decreased light-harvesting capacity as lhca9 is depleted both in LHCA2 and LHCA9. Previously, it has been reported that engineered strains with lower light-harvesting protein content revealed higher H2 production (Oey et al., 2013). Thus, the fast onset in H2 production in pgr5/lhca2 and pgr5/lhca2/lhca9 (Figures 3 and 4) could also be related to PSI-remodeling. It is tempting to speculate that the absence of LHCA2 and/or LHCA9 establishes structural remodeling of PSI such as endorsing PSI–cyt b6f supercomplex formation or promoting dimeric PSI related supercomplexes, that in turn might influence LEF/CEF capacity and/or electron partitioning at the PSI acceptor side.
Thus, enhanced hydrogen production in pgr5/lhca2 might be related to PSI-dependent structural remodeling that would promote overall electron transfer and particularly electron transfer toward hydrogenase. The MIMS data support this view, as pgr5/lhca2 released CO2 in the light, while H2 production increased steadily in the light resulting in an accumulation of 500 µM of H2 in 16 min, corresponding to 62.5-µmol H2 mg−1 chl h−1 at 370 µmol photons m−2 s−1. Milrad et al. (2018), revealed that in a 2-min MIMS experiment under conditions when Calvin cycle is not active, WT algae may produce up to 150-µmol H2 mg−1 chl h−1 at 370 µmol m−2s−1, which drops steeply upon activation of CO2 fixation. In pgr5/lhca2, a high rate of H2 production could be maintained for 16 min, while net CO2 fixation was absent, further supporting the view that Calvin Cycle is competitive to H2 production as suggested (Milrad et al., 2018). The less efficient rate of CO2 assimilation (Figure 5) and high O2 uptake as observed in pgr5 (Steinbeck et al., 2015), indeed suggest that, despite similar photosynthetic ETR in pgr5/lhca2 as compared to WT (Supplemental Figure S3; Figure 6A), electrons are predominately transferred to hydrogenase or exploited for O2 uptake in pgr5/lhca2, whereas in WT, more electrons are utilized for CO2 fixation (Figure 5). In pgr5, which has a pronounced respiration (Steinbeck et al., 2015), rate of CO2 assimilation was lower, as in WT, and comparable with pgr5/lhca2. Increased H2 production in pgr5 versus WT would also indicate that more electrons are dedicated to H2 production, yet less as observed in pgr5/lhca2. A scenario where photosynthetic electrons in pgr5/lhca2 are more efficiently subjected to hydrogenase might also explain the high H2 production under sulfur deficiency (Figures 3 and 4). In C. reinhardtii, the FNR which produces NADPH required for CO2 fixation is 70-fold more abundant than hydrogenase (Nikolova et al., 2018). Thus, it is tempting to speculate that PSI-dimer formation in pgr5/lhca2 might support H2 production via recruiting hydrogenase to PSI and/or by displacing FNR (see below). The fact that more CEF is observed in pgr5/lhca2 (Figures 6, B and 7) as discussed above, is not necessarily a discrepancy but possibly reflects PSI structural remodeling which at the same time supports electron transfer toward hydrogenase.
PGR5 and LHCA2 functions are interrelated
Another open question is how LHCA2 could impact PGR5 function? It has been suggested that PGR5 is required for efficient Q-cycle and PSI-dependent stromal electron input into the cyt b6f complex under anoxia (Buchert et al., 2020). At the same time, PGR5 impacts binding of FNR to thylakoid membranes in C. reinhardtii (Mosebach et al., 2017). A delocalization of FNR from the pgr5 PSI stromal interface could promote electron flow into the stroma, becoming inaccessible for the input into the cyt b6f complex under anoxia. This pgr5 defect may be mitigated by the concomitant absence of LHCA2 which reveals the PSI docking interface for the cyt b6f complex (Steinbeck et al., 2018), thus limiting the drain of PSI electrons into the stromal space. A delocalization of FNR from PSI may also be another reason for more efficient electron transfer to hydrogenase in pgr5/lhca2, as discussed above. Thus, the structural remodeling of stromal features, facilitation of PSI–cyt b6f assemblies, and/or oligomerization states of PSI might distinctly support CEF that is independent of PGR5, thereby suppressing the PGR5 phenotype in regard to CEF (Figure 7). It is interesting to note, that the absence of lhca2 only impacts the pgr5 phenotype when PSII activity is lacking (Supplemental Figure S3; Figures 6 and 7), whereas in the presence of PSII activity the pgr5 phenotype dominates in pgr5/lhca2. Apart from redox poising the PQ pool, PSII activity contributes significantly to membrane energization required for efficient cyt b6f and ATP synthase turnovers (Junge, 1970; Junge et al., 1970; Barbagallo et al., 2000) as well as build-up of photosynthetic control (Stiehl and Witt, 1969). Moreover, PSII also fuels hydrogenase (see above). Certainly, by inhibiting PSII a new energization state of the redox-controlled system is obtained in the light. Thus, it is tempting to speculate why the absence of LHCA2 impacts the bottleneck imposed by pgr5 when the LEF-decoupled system is examined under “CEF only” conditions. It might be related to a DCMU-poised shift in electron sink capacities, the membrane energization state and/or PSI donor side limitation. Notably, lhca2 increased donor side limitation under oxic conditions when PSII was active, likely via an increase of CEF (Figure 8). In addition, depletion of LHCA2 slightly diminished donor side limitation in pgr5 under anoxia, which is in line with higher CEF as observed in pgr5/lhca2 in the presence of DCMU (Figure 7) and might indicate that stromal electron intake is partially restored, as speculated above, in the absence of PGR5 and LHCA2. Together, this would support that lhca2 impacts PSI donor side limitation.
In conclusion, our work identified the pgr5/lhca2 mutant as a very efficient photo-H2 producer. At the same time, it relates hydrogen production as well as photosynthetic electron transfer to PSI remodeling processes and reveals that H2 production is controlled by electron partitioning at the PSI acceptor side. We suggest that the absence of LHCA2 enhances photo-H2 production via improved binding of hydrogenase to PSI and/or electron transfer toward hydrogenase via FDX1 after its photo-reduction by PSI (Supplemental Figure S7). As pgr5/lhca2 and pgr5/lhca9 revealed significantly different H2 production kinetics, LHCA2 and LHCA9 are probably involved in distinct regulatory tasks.
Materials and methods
Strains and maintenance conditions
Chlamydomonas reinhardtii single mutants lhca2 LMJ.RY 0402109691 and lhca9 LHJ.RY04022392761 were collected from Chlamydomonas Library project (https://www.chlamylibrary.org) (Li et al., 2016, 2019), and pgr5 was obtained from T222 background (Johnson et al., 2014). The mutant strains lhca2, lhca9, and pgr5 were backcrossed with WT cc124−/cc125+ three times independently to make the genetic background comparable. The backcrosses were verified with mating type primers MID_Fw (5′-ATGGCCTGTTTCTTAGC-3′), MID_Rev (5′-CTACATGTGTTTCTTGACG-3′), FUS1_Fw (5′-ATGCCTATCTTTCTCATTCT-3′), and FUS1_Rev (5′-GCAAAATACACGTCTGGAAG -3′). The offspring of lhca2, lha9, and pgr5 were analyzed by the following primer LHCA2 _Rev (5′-ACA CAA ACA CAA GGG GAA GC-3′), LHCA2_Fw (5′-GTC ATC TTT CAC CCG CAA AT-3′), LHCA9_ Rev (5′-CTC AGC CCT TCA GCG ATC CT-3′), LHCA9_Fw (5′-GAC CGC TTT GTG TTA CGC TC-3′) PGR5 _Rev (5′-AAG CCC AGC TTC TCG CCG TT-3′), and PGR5_Fw (5′-TCC AAG CCC GTT GTT GGC GT-3′), respectively. As the locus of lhca2 and lhca9 mutant was disrupted with the insertion CIB1 cassette, conferring resistance to paromomycin, the presence of the cassette was assessed by insertion primer OMJ 944 (5′-GAC GTT ACA CGA CAC CCT TG-3′) with LHCA2_Fw (5′-GTC ATC TTT CAC CCG CAA AT-3′) and LHCA9_Fw (5′-AGA TCC CCT GTT ACA TCC CC-3′), respectively. Finally, pgr5/lhca2 and pgr5/lhca9 double mutants were created via mating pgr5 with lhca2 or lhca9 mutant, while triple mutant pgr5/lhca2/lhca9 was generated via crossing pgr5, lhca2, and lhca9 together. The strains were cultivated on TAP agar medium with 1.5% (w/v) agar, pH 7.0 in constant low light intensities from 20 to 30 µmol photon m−2s−1 at 25°C in the alga growth chamber.
Growth conditions
For proteomics analysis, cells for four biological replicates were inoculated in Erlenmeyer flasks containing 20 mL in Tris-acetate phosphate (TAP) medium, pH 7, 25°C under continuous illumination from 50 to 60 µmol photon m−2s−1, shaking at 120 rpm. Twenty-four hours before harvesting, the cells were diluted with a fresh TAP medium to harvest them in the exponential growth phase.
For in vivo hydrogen production, cells were grown initially in 50 mL of standard medium TAP in continuous light intensities ranging from 20 to 30 µmol photon m−2s−1, shaking at 120 rpm. After 3 to 4 d, the cultures were upscaled to 200 mL, 1 L, or 2 L cultures in the same medium and growth conditions.
As for ETR, the strains were cultivated in Erlenmeyer flasks (500 mL) contain liquid tris–phosphate medium free acetate (pH 7.0) with sterile air bubbling, light intensities 7–15 µmol photon m−2s−1 with 16-h light/8-h dark and placed on constant shaker (120 rpm, 25°C) from 6 to 7 d. Cultures were diluted in fresh TP medium 2 d before measurement.
Sample preparation and mass spectrometry analysis
In brief, the cells were harvested, removed supernatant (14,000g, 5 min, 4°C), and pellets were frozen in liquid nitrogen, stored afterward at −80°C. After extracting the samples in the Lysis buffer, the protein concentrations were determined via the Pierce TM BCA Protein Assay kit instructions (Thermo Scientific, Waltham, MA, USA). Proteins (50 µg/sample) was then digested at least 18 h at 37°C into Trypsin enzyme (PROMEGA, Madison, WI, USA) (protein/enzyme ratio 50:1) according to the Filter Aided Sample Preparation protocol (Wisniewski et al., 2009). The reduction and alkylation were modified by fulfillment in 10 mM Tris (2-carboxyethyl) phosphine and 40-mM chloroacetamide in 8-M urea/100 mM Tris/HCl, pH 8.5 at the same time. For each 5-µg peptide aliquot, StageTips c18 were utilized for sample desalting (Rappsilber et al., 2007), then dried at vacuum centrifugation (Concentrator Plus, Eppendorf) and stored at −80°C. Peptides were soluble in 2% (v/v) acetonitrile/0.05% (v/v) trifluoroacetic acid in Millipore water at concentration of 1 µg/µL in theoretical.
The LC–MS/MS analysis were monitored on an Ultimate 3000 RSLC nano LC System (Thermo Scientific, USA) coupled via nano spray interface to an Q Exactive Plus mass spectrometer (Thermo Scientific, USA). For the raw data, the LFQ was evaluated in MaxQuant 1.6.14.0 (Cox and Mann, 2008). The required false discovery rate (FDR) was set to 1% for both identified peptides and proteins. The database from Chlamydomonas version 5.6 gene models (Joint Genome Institute, www.phytozome.org), combined with mitochondrial and chloroplast protein sequences from NCBI databases BK000554.2 and NC_001638.1. Carbamidomethylation of cysteines were utilized for modification. The primary LFQ data then was imported into Perseus (version 1.6.13.0.2) (Tyanova et al., 2016) for late analysis. Statistics were carried out by one-way ANOVA using Tukey’s range test (FDR 5%) as the post hoc test.
In vivo hydrogen production
The cells were harvested in the growth phase, washed three times with TAP Sulfur deprivation (TAP-S) medium (2,500g, 5 min, 22°C) (Melis et al., 2000) and then resuspended in a sealed 500-mL glass bottle (Schott for mass spectrometer measurements) or a 1 L in gas tight glass fermenter illuminated (BlueSens gas measuring system) in TAP-S medium at the final concentration of chlorophyll 15 mg L−1. Each culture was placed on a constant’s stirrer and facing a continuous light intensity at 60–65 µmol photon m−2s−1 in one side illumination (Schott) or/and four sides illumination (BlueSens). The percentage of hydrogen production was monitored every 24 h by gas chromatography, gas volume was measured by the water level in 100-mL syringe connecting with the glass bottles via needle inserting a tube into the rubber lid seal. For the BlueSens gas measuring system, the fermenter was equipped with three gas sensors (H2, O2, CO2, BlueSens GmbH, Herten, Germany) constantly recording the composition of the headspace (in Vol%). The total volume of gas produced was automatically analyzed every 2 s or/and 5 min with a gas volume counter (BlueV Count) attached via a cold trap (Supplemental Figure S1).
MIMS analysis
MIMS analysis was performed as described by Liran et al. (2016). For gas exchange measurements, 5 mL of cells at a concentration of 15 μg Chl mL−1 in TAP supplemented with HEPES [50 mM] were placed in a cuvette fitted into a metabolic chamber (Optical unit ED-101US/MD, Walz). Following 2-h dark incubation, the cells were exposed to 370 or 2,500 µmol photon m−2.s−1 of a red actinic light using a Dual-Pulse Amplitude Modulated Fluorometer (DUAL-PAM-100; Heinz Walz Gmbh, Effeltrich, Germany). A standard curve described in (Liran et al., 2016) was used to normalize H2, O2, and CO2 traces. Masses were detected using a 0.5-s dwelling time per mass.
Measurement of ETR and P700 redox states
For sample preparation, the cells were harvested by centrifugation (4,000g, 7 min, 25°C) and chlorophyll concentration was adjusted to 20 µg mL−1 in TP medium containing 20% (w/v) Ficoll (PM 400) in open cuvettes. The cells were dark adapted on a shaker set to ∼120 rpm for 20 min prior to measurement. To maintain oxic conditions, samples were mixed regularly every 2 min during measurements. For anoxic conditions, 50-mM glucose, 10-U glucose oxidase, and 30-U catalase were added to each sample cuvette, which were then covered with a layer of mineral oil. Dark incubation of anoxic samples was at least 20 min. For PSII inhibition, each sample was resuspended with 1-mM HA (1 mM) and 10-µM DCMU (Buchert et al., 2020).
ETR calculations were performed by ECS measurements using Joliot type spectrometer devices (for Figures 6 and 7, JTS-10, Biologic, France and for Supplemental Figures S5 and S6, Y JTS-150, Spectrologix, USA). Multi-wavelength measurements were carried out simultaneously with the JTS-150, and the ΔI/I absorption changes in the JTS-10 were measured with white detection pulses in combination with interference filters peaking at 520 and 546 nm (520–546 ECS signals). Photodiodes were protected by BG39 filters (Schott, Germany). The ETR method, measuring stable charge separation rates, is based on the dark pulse protocol (Joliot and Joliot, 2002; Nawrocki et al., 2019). All ECS signals were normalized to one charge separation per PSI, recorded as the ECS signal amplitude in the presence of HA and DCMU that were produced ∼300 µs after a single turnover Nd:YAG laser flash (∼6-ns duration, Minilite II, Continuum). Thus, even when PSII was not inhibited the ECS data was normalized to PSI signals. The cells were dark-adapted for 20 min and experienced two consecutive continuous illumination periods of 10-s actinic light (∼150-µmol photons m−2 s−1 peaking at 630 nm), spaced by 700-ms darkness (Supplemental Figure S2). Over the course of the 10-s illumination, ECS slopes were recorded before (SL) and after the onset of a 5-ms dark interval (SD). Contribution of possible charge recombinations in the first millisecond of darkness were avoided by calculation SD after cessation of those electrogenic processes (Nawrocki et al., 2019). Two separate sequences with an offset of the dark pulses were combined in each ETR panel to keep accumulative dark interval artifacts to a minimum. Maximal photochemical rates, plotted as 1 ms of illumination in the ETR panels, were obtained from independent ECS slopes of dark-adapted material during the first 2 ms of actinic illumination. Thus, ECS slopes were only limited by antenna size and actinic light intensity.
Measurements of the P700 redox state were obtained in dark-adapted cells at the end of a 10-s continuous illumination period (∼150-µmol photons m−2 s−1 peaking at 630 nm). The method is based on a previous protocol (Klughammer and Schreiber, 1994). Multi-wavelength measurements were carried out simultaneously with the JTS-150 and the ΔI/I absorption changes in the JTS-10 were detected with pulses of 700-nm LEDs in combination with 705- and 740-nm interference filters (705–740 P700 signals). Photodiodes were protected by RG695 filters (Schott, Germany). The P700 fractions at the end of continuous illumination period could be divided into pre-oxidized due to donor-side limitation (YND), photo-oxidizable by a 22-ms saturating pulse on top of continuous light (YI) and nonphotooxidizable P700 due to acceptor side limitation (YNA). For this discrimination, the fully oxidized P700 signal amplitude was obtained in PSII-inhibited HA/DCMU samples measured under identical conditions.
Supplemental data
The following materials are available in the online version of this article.
Supplemental Figure S1. Setting for H2 measurement by BlueSens (GmbH, Herten, Germany).
Supplemental Figure S2. Exemplary measurements of total electron transfer rate (ETR) are shown.
Supplemental Figure S3. The electron transfer rate (ETR) was calculated via the dark pulse method after 20-min dark adaptation for strains pgr5/lhca2, pgr5, lhca2, and WT cc124.
Supplemental Figure S4. P700 deconvolution in WT cc124, single mutants lhca2 and pgr5, and pgr5/lhca2 double mutants under anoxia.
Supplemental Figure S5. The electron transfer rate (ETR) was calculated via the dark pulse method after 20-min dark adaptation for strains pgr5/lhca9, lhca9, and WT cc124.
Supplemental Figure S6. The electron transfer rate (ETR) was calculated via the dark pulse method after the 700-ms dark period for strains pgr5/lhca9, lhca9, and WT cc124.
Supplemental Figure S7. Schematic view on PSI remodeling processes.
Supplementary Material
Acknowledgments
We like to acknowledge critical reading of our manuscript by Lara Hoepfner and Laura Mosebach.
Funding
German Science Foundation (DFG 739/13-1/2) to M.H. The German-Israeli Foundation for Scientific Research and Development (GIF) grant no. G-1483-207/2018 to M.H. Federal states (NRW 313-WO44A) and progres.nrw - Research, 005-2004-0018 063 to M.H.
RECTOR programme (University of Okayama, Japan) to M.H. Vietnamese Government Scholarship (VIED) to T.T.H.H.
Conflict of interest statement. The authors declare no conflict of interest.
Contributor Information
Thi Thu Hoai Ho, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany; Faculty of Fisheries, University of Agriculture and Forestry, Hue University, Hue 530000, Vietnam.
Chris Schwier, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany.
Tamar Elman, School of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.
Vera Fleuter, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany.
Karen Zinzius, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany.
Martin Scholz, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany.
Iftach Yacoby, School of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel.
Felix Buchert, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany.
Michael Hippler, Institute of Plant Biology and Biotechnology, University of Münster, Münster 48143, Germany; Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan.
F.B and M.H. designed the research; T.T.H.H., C.S., T.E., V.F, and K.Z. performed the research; T.T.H.H, T.E., K.Z., M.S., I.Y., F.B., and M.H. analyzed the data; and M.H. wrote the paper with the help of T.T.H.H. and F.B.
The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (https://academic.oup.com/plphys/pages/general-instructions) is Michael Hippler (http://mhippler@uni-muenster.de).
References
- Alric J (2010) Cyclic electron flow around photosystem I in unicellular green algae. Photosynth Res 106: 47–56 [DOI] [PubMed] [Google Scholar]
- Antal TK, Krendeleva TE, Laurinavichene TV, Makarova VV, Ghirardi ML, Rubin AB, Tsygankov AA, Seibert M (2003) The dependence of algal H2 production on Photosystem II and O2 consumption activities in sulfur-deprived Chlamydomonas reinhardtii cells. Biochim Biophys Acta 1607: 153–160 [DOI] [PubMed] [Google Scholar]
- Antoshvili M, Caspy I, Hippler M, Nelson N (2019) Structure and function of photosystem I in Cyanidioschyzon merolae. Photosynth Res 139: 499–508 [DOI] [PubMed] [Google Scholar]
- Arnon DI (1959) Conversion of light into chemical energy in photosynthesis. Nature 184: 10–21 [DOI] [PubMed] [Google Scholar]
- Bailleul B, Cardol P, Breyton C, Finazzi G (2010) Electrochromism: a useful probe to study algal photosynthesis. Photosynth Res 106: 179–189 [DOI] [PubMed] [Google Scholar]
- Barbagallo RP, Breyton C, Finazzi G (2000) Kinetic effects of the electrochemical proton gradient on plastoquinone reduction at the Qi site of the cytochrome b6f complex. J Biol Chem 275: 26121–26127 [DOI] [PubMed] [Google Scholar]
- Buchert F, Mosebach L, Gabelein P, Hippler M (2020) PGR5 is required for efficient Q cycle in the cytochrome b6f complex during cyclic electron flow. Biochem J 477: 1631–1650 [DOI] [PubMed] [Google Scholar]
- Cox J, Mann M (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat Biotechnol 26: 1367–1372 [DOI] [PubMed] [Google Scholar]
- Crepin A, Kucerova Z, Kosta A, Durand E, Caffarri S (2020) Isolation and characterization of a large photosystem I-light-harvesting complex II supercomplex with an additional Lhca1-a4 dimer in Arabidopsis. Plant J 102: 398–409 [DOI] [PubMed] [Google Scholar]
- Desplats C, Mus F, Cuine S, Billon E, Cournac L, Peltier G (2009) Characterization of Nda2, a plastoquinone-reducing type II NAD(P)H dehydrogenase in chlamydomonas chloroplasts. J Biol Chem 284: 4148–4157 [DOI] [PubMed] [Google Scholar]
- Eilenberg H, Weiner I, Ben-Zvi O, Pundak C, Marmari A, Liran O, Wecker M, Milrad Y, Yacoby I (2016) The dual effect of a ferredoxin-hydrogenase fusion protein in vivo: successful divergence of the photosynthetic electron flux towards hydrogen production and elevated oxygen tolerance. Biotechnol Biofuels 9: 182. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fouchard S, Hemschemeier A, Caruana A, Pruvost K, Legrand J, Happe T, Peltier G, Cournac L (2005) Autotrophic and mixotrophic hydrogen photoproduction in sulfur-deprived Chlamydomonas cells. Appl Environ Microbiol 71: 6199–6205 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Happe T, Hemschemeier A, Winkler M, Kaminski A (2002) Hydrogenases in green algae: do they save the algae's life and solve our energy problems? Trends Plant Sci 7: 246–250 [DOI] [PubMed] [Google Scholar]
- Hemschemeier A, Fouchard S, Cournac L, Peltier G, Happe T (2008) Hydrogen production by Chlamydomonas reinhardtii: an elaborate interplay of electron sources and sinks. Planta 227: 397–407 [DOI] [PubMed] [Google Scholar]
- Huang Z, Shen L, Wang W, Mao Z, Yi X, Kuang T, Shen JR, Zhang X, Han G (2021) Structure of photosystem I-LHCI-LHCII from the green alga Chlamydomonas reinhardtii in State 2. Nat Commun 12: 1100. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Iwai M, Takizawa K, Tokutsu R, Okamuro A, Takahashi Y, Minagawa J (2010) Isolation of the elusive supercomplex that drives cyclic electron flow in photosynthesis. Nature 464: 1210–1213 [DOI] [PubMed] [Google Scholar]
- Jans F, Mignolet E, Houyoux PA, Cardol P, Ghysels B, Cuine S, Cournac L, Peltier G, Remacle C, Franck F (2008) A type II NAD(P)H dehydrogenase mediates light-independent plastoquinone reduction in the chloroplast of Chlamydomonas. Proc Natl Acad Sci USA 105: 20546–20551 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Johnson X, Steinbeck J, Dent RM, Takahashi H, Richaud P, Ozawa S, Houille-Vernes L, Petroutsos D, Rappaport F, Alric J, et al. (2014) Proton gradient regulation 5-mediated cyclic electron flow under ATP- or redox-limited conditions: a study of deltaATPase pgr5 and deltarbcL pgr5 mutants in the green alga Chlamydomonas reinhardtii. Plant Physiol 165: 438–452 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Joliot P, Beal D, Joliot A (2004) Cyclic electron flow under saturating excitation of dark-adapted Arabidopsis leaves. Biochim Biophys Acta (BBA) - Bioenerget 1656: 166–176 [DOI] [PubMed] [Google Scholar]
- Joliot P, Joliot A (2002) Cyclic electron transfer in plant leaf. Proc Natl Acad Sci USA 99: 10209–10214 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Joliot P, Joliot A (2006) Cyclic electron flow in C3 plants. Biochim Biophys Acta 1757: 362–368 [DOI] [PubMed] [Google Scholar]
- Junge W (1970) The critical electric potential difference for photophosphorylation. Its relation to the chemiosmotic hypothesis and to the triggering requirements of the ATPase system. Eur J Biochem 14: 582–592 [DOI] [PubMed] [Google Scholar]
- Junge W, Rumberg B, Schroder H (1970) The necessity of an electric potential difference and its use for photophosphorylation in short flash groups. Eur J Biochem 14: 575–581 [DOI] [PubMed] [Google Scholar]
- Khosravitabar F, Hippler M (2019) A new approach for improving microalgal biohydrogen photoproduction based on safe & fast oxygen consumption. Int J Hydrogen Energy 44: 17835–17844 [Google Scholar]
- Klughammer C, Schreiber U (1994) An improved method, using saturating light-pulses, for the determination of photosystem-I quantum yield via P700+-absorbency changes at 830 nm. Planta 192: 261–268 [Google Scholar]
- Kosourov S, Jokel M, Aro EM, Allahverdiyeva Y (2018) New approach for sustained and efficient H2 photoproduction by Chlamydomonas reinhardtii. Energy Environ Sci 1: 1431–1436 [Google Scholar]
- Kosourov S, Seibert M, Ghirardi ML (2003) Effects of extracellular pH on the metabolic pathways in sulfur-deprived, H2-producing Chlamydomonas reinhardtii cultures. Plant Cell Physiol 44: 146–155 [DOI] [PubMed] [Google Scholar]
- Kubota-Kawai H, Burton-Smith RN, Tokutsu R, Song C, Akimoto S, Yokono M, Ueno Y, Kim E, Watanabe A, Murata K, Minagawa J (2019) Ten antenna proteins are associated with the core in the supramolecular organization of the photosystem I supercomplex in Chlamydomonas reinhardtii. J Biol Chem 294: 4304–4314 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Li X, Patena W, Fauser F, Jinkerson RE, Saroussi S, Meyer MT, Ivanova N, Robertson JM, Yue R, Jonikas MC, et al. (2019) A genome-wide algal mutant library and functional screen identifies genes required for eukaryotic photosynthesis. Nat Genet 51: 627–635 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Li X, Zhang R, Patena W, Gang SS, Blum SR, Ivanova N, Yue R, Robertson JM, Lefebvre PA, Jonikas MC, et al. (2016) An indexed, mapped mutant library enables reverse genetics studies of biological processes in Chlamydomonas reinhardtii. Plant Cell 28: 367–387 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liran O, Semyatich R, Milrad Y, Eilenberg H, Weiner I, Yacoby I (2016) Microoxic niches within the thylakoid stroma of air-grown Chlamydomonas reinhardtii protect [FeFe]-hydrogenase and support hydrogen production under fully aerobic environment. Plant Physiol 172: 264–271 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mazor Y, Borovikova A, Caspy I, Nelson N (2017) Structure of the plant photosystem I supercomplex at 2.6 A resolution. Nat Plants 3: 17014. [DOI] [PubMed] [Google Scholar]
- Mazor Y, Borovikova A, Nelson N (2015) The structure of plant photosystem I super-complex at 2.8 A resolution. eLife 4: e07433. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Melis A, Zhang L, Forestier M, Ghirardi ML, Seibert M (2000) Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. Plant Physiol 122: 127–136 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Milrad Y, Schweitzer S, Feldman Y, Yacoby I (2018) Green algal hydrogenase activity is outcompeted by carbon fixation before inactivation by oxygen takes place. Plant Physiol 177: 918–926 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mosebach L, Heilmann C, Mutoh R, Gabelein P, Steinbeck J, Happe T, Ikegami T, Hanke G, Kurisu G, Hippler M (2017) Association of Ferredoxin:NADP(+) oxidoreductase with the photosynthetic apparatus modulates electron transfer in Chlamydomonas reinhardtii. Photosynth Res 134L 291–306 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nagy V, Podmaniczki A, Vidal-Meireles A, Kuntam S, Herman E, Kovacs L, Tóth A, Scoma A, Toth SZ (2021) Thin cell layer cultures of Chlamydomonas reinhardtii L159I-N230Y, pgrl1 and pgr5 mutants perform enhanced hydrogen production at sunlight intensity (vol 333, 125217, 2021). Bioresource Technol 338: 125545. [DOI] [PubMed] [Google Scholar]
- Nagy V, Podmaniczki A, Vidal-Meireles A, Tengolics R, Kovacs L, Rakhely G, Scoma A, Toth SZ (2018) Water-splitting-based, sustainable and efficient H2 production in green algae as achieved by substrate limitation of the Calvin-Benson-Bassham cycle. Biotechnol Biofuels 11: 69. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Naschberger A, Mosebach L, Tobiasson V, Kuhlgert S, Scholz M, Perez-Boerema A, Takahashi Y, Hippler M, Amunts A (2021) Chloroplast photosystem I dimer and high resolution model of the complex with plastocyanin. bioRxiv doi.org/10.1101/2021.08.30.458224 [Google Scholar]
- Nawrocki WJ, Bailleul B, Cardol P, Rappaport F, Wollman FA, Joliot P (2019) Maximal cyclic electron flow rate is independent of PGRL1 in Chlamydomonas. Biochim Biophys Acta Bioenerg 1860: 425–432 [DOI] [PubMed] [Google Scholar]
- Nelson N, Yocum CF (2006) Structure and function of photosystems I and II. Annu Rev Plant Biol 57: 521–565 [DOI] [PubMed] [Google Scholar]
- Nikolova D, Heilmann C, Hawat S, Gabelein P, Hippler M (2018) Absolute quantification of selected photosynthetic electron transfer proteins in Chlamydomonas reinhardtii in the presence and absence of oxygen. Photosynth Res 137: 281–293 [DOI] [PubMed] [Google Scholar]
- Oey M, Ross IL, Stephens E, Steinbeck J, Wolf J, Radzun KA, Kügler J, Ringsmuth AK, Kruse O, Hankamer B. (2013) RNAi knock-down of LHCBM1, 2 and 3 increases photosynthetic H2 production efficiency of the green alga Chlamydomonas reinhardtii. PLoS One 8: e61375. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ozawa SI, Bald T, Onishi T, Xue H, Matsumura T, Kubo R, Takahashi H, Hippler M, Takahashi Y (2018) Configuration of ten light-harvesting chlorophyll a/b complex I subunits in Chlamydomonas reinhardtii photosystem I. Plant Physiol 178: 583–595 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M (2021) Structural basis of LhcbM5-mediated state transitions in green algae. Nat Plants 7: 1119–1131 [DOI] [PubMed] [Google Scholar]
- Peltier G, Tolleter D, Billon E, Cournac L (2010) Auxiliary electron transport pathways in chloroplasts of microalgae. Photosynth Res 106: 19–31 [DOI] [PubMed] [Google Scholar]
- Pi X, Tian L, Dai HE, Qin X, Cheng L, Kuang T, Sui SF, Shen JR (2018) Unique organization of photosystem I-light-harvesting supercomplex revealed by cryo-EM from a red alga. Proc Natl Acad Sci USA 115: 4423–4428 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Qin X, Pi X, Wang W, Han G, Zhu L, Liu M, Cheng L, Shen JR, Kuang T, Sui SF (2019) Structure of a green algal photosystem I in complex with a large number of light-harvesting complex I subunits. Nat Plants 5: 263–272 [DOI] [PubMed] [Google Scholar]
- Qin X, Suga M, Kuang T, Shen JR (2015) Photosynthesis structural basis for energy transfer pathways in the plant PSI-LHCI supercomplex. Science 348: 989–995 [DOI] [PubMed] [Google Scholar]
- Rappsilber J, Mann M, Ishihama Y (2007) Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat Protoc 2: 1896–1906 [DOI] [PubMed] [Google Scholar]
- Shikanai T (2007) Cyclic electron transport around photosystem I: genetic approaches. Annu Rev Plant Biol 58: 199–217 [DOI] [PubMed] [Google Scholar]
- Steinbeck J, Nikolova D, Weingarten R, Johnson X, Richaud P, Peltier G, Hermann M, Magneschi L, Hippler M (2015) Deletion of Proton Gradient Regulation 5 (PGR5) and PGR5-Like 1 (PGRL1) proteins promote sustainable light-driven hydrogen production in due to increased PSII activity under sulfur deprivation. Front Plant Sci 6: 892. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Steinbeck J, Ross IL, Rothnagel R, Gabelein P, Schulze S, Giles N, Ali R, Drysdale R, Sierecki E, Hankamer B, et al. (2018) Structure of a PSI-LHCI-cyt b6f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions. Proc Natl Acad Sci USA 115: 10517–10522 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stiehl HH, Witt HT (1969) Quantitative treatment of the function of plastoquinone in photosynthesis. Z Naturforsch Teil B 24: 1588–1598 [DOI] [PubMed] [Google Scholar]
- Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M (2019) Antenna arrangement and energy transfer pathways of a green algal photosystem-I-LHCI supercomplex. Nat Plants 5: 273–281 [DOI] [PubMed] [Google Scholar]
- Suga M, Ozawa SI, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y (2019) Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I. Nat Plants 5: 626–636 [DOI] [PubMed] [Google Scholar]
- Toth SZ, Yacoby I (2019) Paradigm shift in algal H2 production: bypassing competitive processes. Trends Biotechnol 37: 1159–1163 [DOI] [PubMed] [Google Scholar]
- Tyanova S, Temu T, Sinitcyn P, Carlson A, Hein MY, Geiger T, Mann M, Cox J (2016) The Perseus computational platform for comprehensive analysis of (prote)omics data. Nat Methods 13: 731–740 [DOI] [PubMed] [Google Scholar]
- Wisniewski JR, Zougman A, Nagaraj N, Mann M (2009) Universal sample preparation method for proteome analysis. Nat Methods 6: 359–362 [DOI] [PubMed] [Google Scholar]
- Yacoby I, Pochekailov S, Toporik H, Ghirardi ML, King PW, Zhang S (2011) Photosynthetic electron partitioning between [FeFe]-hydrogenase and ferredoxin:NADP+-oxidoreductase (FNR) enzymes in vitro. Proc Natl Acad Sci USA 108: 9396–9401 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yamamoto H, Peng L, Fukao Y, Shikanai T (2011) An Src homology 3 domain-like fold protein forms a ferredoxin binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis. Plant Cell 23: 1480–1493 [DOI] [PMC free article] [PubMed] [Google Scholar]
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