Bacterial and virus strains |
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The antarctic strain CCCryo 231-06 (= UTEX EE21; CCMEE 391) of the cyanobacterium Nostoc sp. |
Biobank CCCryo at Branch Bioanalytics and Bioprocesses of the Fraunhofer Institute for Cell Therapy and Immunology (IZI-BB), Potsdam, Germany |
CCCryo 231-06 |
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Chemicals, peptides, and recombinant proteins |
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Pluronic F127 |
Sigma Aldrich |
Cat# P2443; CAS: 9003-11-6 |
PBS |
Fisher Scientific |
Cat# BP243820
|
PDMS |
Momentive |
RTV615 |
UltraPure™ 0.5M EDTA, pH 8.0 |
ThermoFisher |
Cat# 15575020 |
Ready-Lyse™ Lysozyme Solution |
Lucigen |
Cat# R1804M |
Dithiothreitol (DTT) |
Bio-rad |
Cat# 1610611 |
Low-EDTA TE (1X), pH 8.0 |
VWR |
Cat# 10128-588 |
NEBNext® Multiplex Oligos for Illumina® |
New England Biolabs |
Cat# E7335S |
SPRIselect Beads |
Beckman Coulter |
Cat# B23318
|
|
Deposited data |
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Genome sequence |
This paper |
NCBI, accession# PRJNA721463, the locus tag prefix is KBT16. |
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Experimental models: Organisms/strains |
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The antarctic strain CCCryo 231-06 (= UTEX EE21; CCMEE 391) of the cyanobacterium Nostoc sp. |
Biobank CCCryo at Branch Bioanalytics and Bioprocesses of the Fraunhofer Institute for Cell Therapy and Immunology (IZI-BB), Potsdam, Germany |
CCCryo 231-06 |
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Software and algorithms |
|
Samtools |
Schneider et al. (2012) |
http://samtools.sourceforge.net/ |
BioBloomTools |
Chu et al. (2014) |
https://mybiosoftware.com/tag/biobloomtools |
Atropos |
Didion et al. (2017) |
https://bio.tools/atropos |
BBTools |
https://sourceforge.net/projects/bbmap/, 2019 |
https://sourceforge.net/projects/bbmap/ |
MEGAHIT |
Li et al. (2015) |
https://bio.tools/megahit |
BusyBee |
Laczny et al. (2017) |
https://ccb-microbe.cs.uni-saarland.de/busybee |
CheckM |
Parks et al. (2015) |
https://github.com/Ecogenomics/CheckM |
GTDBtk tool |
Parks et al. (2018) |
https://github.com/Ecogenomics/GTDBTk |
Prokka |
Seemann et al., 2014 |
https://github.com/tseemann/prokka |
eggNOG mapper |
Huerta-Cepas al., 2017 |
https://github.com/eggnogdb/eggnog-mapper |
PATRIC |
Davis et al. (2020) |
https://www.patricbrc.org/ |
RAxML |
Stamatakis et al., 2014 |
https://cme.h-its.org/exelixis/web/software/raxml/ |
Dendroscope 3 |
Huson et al., 2012 |
https://uni-tuebingen.de/ |
PHASTER |
Arndt et al. (2016) |
https://phaster.ca/ |
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Other |
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REPLI-g Single Cell Kit |
Qiagen |
Cat# 150,343 |
NEBNext Ultra II DNA Library Prep Kit for Illumina |
New England Biolabs |
Cat# E7103 |
HiSeq 3000/4000 PE Cluster Kit |
Illumina |
Cat# PE-410-1001 |
HiSeq 3000/4000 SBS Kit (300 cycles) |
Illumina |
Cat# FC-410-1003 |