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. 2022 May 26;11:e74160. doi: 10.7554/eLife.74160

Table 1. The transition rates between all possible states of a crosslinker U(SA, SB)D.

(SA, SB) means either head A or B is bound but the other is unbound. All binding rates account for the linear binding density ϵ is the length of filament i with center-of-mass position xi and orientation pi inside the capture sphere with cutoff radius rc,S relative to position of motor/crosslinker x. The sum is over all possible candidate filaments i. The unbound-singly bound transition U(SA,SB) is determined by the association constant Ka and the force-independent off rate ko,S. Similarly, the singly bound-doubly bound transition (SA,SB)D is determined by the association constant Ke and force-independent off rate ko,D is the Boltzmann factor. E() in the in the (SA,SB)D transition rates refers to the tether energy of a motor E()=12κxl(f0)2. 0 is the free length of a motor, while f is the length for computing the force when attached to filaments i and j at locations si and sj: f(si,sj,xi,pi,xj,pj). The dimensionless factor λ determines the energy dependence in the unbinding rate. Both binding and unbinding rates must depend on λ and ko,d such that the equilibrium constant recovers the Boltzmann factor exp[-βE(f)] For force-dependent binding models, the E() can be simply replaced by the tether force F(). This is not used for results shown in this work, but implemented in the code.

Process Rate Value
U(SA,SB) Ron,S(x) ko,S3ϵKa4πrc,S3iLin,i(x)
(SA,SB)U Roff,S ko,S
(SA,SB)D Ron,D(si) ko,DϵKejLjdsjexp[(1λ)βE(f(s))]
D(SA,SB) Roff,D(si,sj) ko,Dexp[λE(f)]