Abstract
Background:
Accurate Sezary cell detection in peripheral blood of mycosis fungoides/Sezary syndrome (MF/SS) patients by flow cytometry can be difficult due to overlapping immunophenotypes with normal T cells using standard markers. We assessed the utility of programmed death-1 (PD-1/CD279), a transmembrane protein expressed in some hematopoietic cells, for identification and quantitation of circulating Sezary cells among established markers using flow cytometry.
Methods:
50 MF/SS and 20 control blood samples were immunophenotyped by flow cytometry. Principal component analysis (PCA) assessed contributions of antigens to separation of abnormal from normal T cell populations. PD-1 was assessed over time in blood and bone marrow of available MF/SS cases.
Results:
Normal CD4+ T cells showed dim/intermediate to absent PD-1 expression. PD-1 in Sezary cells was informatively brighter (≥1/3 log) than internal normal CD4+ T cells in 39/50 (78%) cases. By PCA, PD-1 ranked 3rd behind CD7 and CD26 in population separation as a whole; it ranked in the top 3 markers in 32/50 (64%) cases and 1st in 4/50 (8%) cases when individual abnormal populations were compared to total normal CD4+ T cells. PD-1 clearly separated Sezary from normal CD4+ T cells in 15/26 (58%, 30% of total) cases with few and subtle alterations of pan T-cell antigens/CD26 and was critical in 6 (12% of total), without which identification and quantification were significantly affected or nearly impossible. PD-1 remained informative in blood/bone marrow over time in most patients.
Conclusions:
PD-1 significantly contributes to accurate flow cytometric Sezary cell assessment in a routine Sezary panel.
Keywords: PD-1, Sezary syndrome, mycosis fungoides, flow cytometry
Introduction
Mycosis fungoides (MF) and Sezary syndrome (SS) are related subtypes of cutaneous T cell lymphoma with overlapping histologic and immunophenotypic characteristics as well as a shared clinical staging system and treatment paradigm (1–4). Accurate assessment of neoplastic T cells (termed “Sezary cells”) in peripheral blood of MF/SS patients is critical as Sezary cell burden is used for clinical staging (2), therapeutic decision making and assessment of therapeutic responses (4, 5).
Current recommendations for detection and quantification of Sezary cells involve identification of homogeneous T cells clusters with immunophenotypes different from normal utilizing multiple antigens. This method is more sensitive and accurate than former ones like cytomorphologic peripheral blood smear review and simplified calculations purported to correlate with Sezary cell burden by flow cytometry, such as elevated CD4:CD8 ratios or expanded CD4+/CD7- and/or CD4+/CD26- T cell populations (6–9). This method requires a comprehensive panel of antigens, which is currently limited to pan-T cell antigens and CD26 in many laboratories, to determine a composite phenotype as Sezary cells often overlap immunophenotypically with normal T cells and lack specific markers. Indeed, although diminished CD7 and CD26 are the most frequent aberrancies in MF/SS, they can also be reduced in subsets of normal T cells (10, 11), while alterations of other pan-T cell antigens are often subtle (8, 10, 12, 13). Given this gating strategy shift and the limitations of current markers, novel antigens that can differentiate Sezary cells from normal T cells are increasingly important.
Programmed death-1 (PD-1/CD279) is a transmembrane protein within the CD28 receptor family that inhibits T cell function (14). It is expressed in T cells, some B cells and a subset of myeloid cells upon activation (14, 15) and in certain cell types, like T follicular helper cells, at constitutively high levels (16). Although studies have demonstrated increased PD-1 expression in MF/SS (8, 13, 17–27), most were limited to immunohistochemical evaluation of skin biopsies. Such studies suffered from difficulties in definitively characterizing tumor cells due to admixed reactive inflammatory cells and differing thresholds for defining positivity, consequently showing conflicting results (13, 17–22). Large scale studies evaluating PD-1 by flow cytometry in circulating Sezary cells identified by composite immunophenotype are rare (8, 23–25) and none to our knowledge have comprehensively assessed the utility of PD-1 in the context of established markers for accurate Sezary cell detection. In addition, a recent international guideline could not reach a consensus on whether to recommend PD-1 for Sezary cell evaluation by flow cytometry, likely due to limited experience with this maker in many laboratories (12). Given the limited data, we systematically evaluated the additive value of PD-1 to standard T cell antigens for accurate identification of circulating Sezary cells using flow cytometry.
Materials and methods
Patient and sample selection:
Fifty patients with MF or SS and peripheral blood samples evaluated by flow cytometry at Memorial Sloan Kettering Cancer Center between 12/2015 and 9/2020 were identified. The first blood sample from each patient in which PD-1 was utilized in the flow cytometry panel with an aberrant T cell population comprising ≥0.1% of total white cells was evaluated. The diagnosis of MF/SS was established based on multidisciplinary clinical assessment, histologic evaluation of skin, lymph node and/or bone marrow biopsies, flow cytometric analysis of peripheral blood and, when needed, T cell receptor (TCR) gene rearrangement analysis. Subsequent available peripheral blood and bone marrow samples containing aberrant T cell populations comprising ≥0.1% of total white cells were evaluated in patients with at least 2 such samples. Twenty control peripheral blood samples from patients without a T cell lymphoproliferative disorder were analyzed. Clinical and laboratory data was obtained from electronic medical records. The study was approved by the Institutional Review Board of Memorial Sloan Kettering Cancer Center.
Flow cytometry:
High sensitivity multiparameter flow cytometric immunophenotyping was performed with a FACS Canto 10-color instrument (BD Biosciences, San Jose, CA) using the following antibodies: CD45-V500C (2D1, BD Biosciences), CD3-PC7 (UCHT1, Beckman-Coulter, Miami, FL), CD2-BV421 (RPA-2.10, BD Horizon, San Jose, CA), CD5-APC (L17F12, BD Biosciences), CD7-BB515 (M-T701, BD Horizon), CD4-APC-A700 (13B8.2, Beckman-Coulter), CD8-APC-H7 (SK1, BD Biosciences), CD56-PE (N901, Beckman-Coulter), CD26-PerCP-Cy5.5 (BA5B, BioLegend, San Diego, CA) and CD279 (PD-1)-BV605 (EH12.2H7, BioLegend). At least 200,000 cells were acquired and at least 20 events were required for a positive result. The data was analyzed using custom software (“Woodlist,” gift of B.L. Wood, University of Washington, Seattle, WA). Abnormal T cell populations were identified by visual assessment based on aberrant antigen expression. Median fluorescent intensity (MFI) of markers was evaluated. Abnormal populations were considered “dim” or “bright” for a given marker if the fluorescent intensity was ≥1/3 log different from that of corresponding internal normal CD4+ T cells. In select cases, clonality of T cell populations was assessed with a Beta Mark TCR Vβ Repertoire Kit (Beckman-Coulter) using a modified, single-tube method as described previously (25).
Molecular analysis:
TCR gene rearrangement was performed by polymerase chain reaction-based capillary electrophoresis fragment analysis on select blood and tissue samples during clinical work up. Briefly, genomic DNA was extracted and PCR performed using commercially available fluorescently-labeled primers (Invivoscribe, Inc. BIOMED-2, San Diego, CA) to amplify conserved regions within the TCR β and TCR γ genes. Capillary electrophoresis with an ABI 3730 DNA analyzer (Thermo Fisher Scientific, Waltham, MA) was used to determine fragment lengths of the PCR products and the results were interpreted according to established guidelines (28).
Statistical analysis:
Principal component analysis (PCA) was performed with Infinicyt™ flow cytometry data analysis software (Cytognos, Salamanca, Spain), which utilizes an automatic population separator based on principal component analysis, to evaluate the relative contributions of each antibody utilized in the flow panel (CD45/CD3/CD2/CD5/CD7/CD4/CD8/CD56/CD26/CD279 (PD-1)) to the separation of normal and abnormal T cell clusters. Three database groups were created and compared: a normal CD4+ T cell group, an abnormal T cell group and an internal normal CD4+ T cell group. The 20 control peripheral blood samples were used for the normal CD4+ T cell group. The internal normal group utilized the background immunophenotypically normal CD4+ T cells from the MF/SS patient blood samples. All groups were created using equal numbers of events from each case. Each antigen’s contribution of variation to the principal component 1 (PC1) and principal component 2 (PC2) vectors separating normal from abnormal T cells was documented. Paired t test was used to compare abnormal and internal normal populations’ MFI values while unpaired Mann-Whitney tests were utilized for all other comparative analyses.
Results
Sezary cells in MF/SS commonly express brighter PD-1 than normal CD4+ T cells in peripheral blood
In all 20 control blood samples, normal CD4+ T cells showed absent or, less commonly, a continuum of PD-1 expression from dim/intermediate to absent without a distinctly positive population (Figure 1A). PD-1 expression in abnormal and residual internal normal CD4+ T cells in blood samples from 50 unique MF/SS patients was then evaluated. The median age at sample collection was 65 (range 31–86) years with a male:female ratio of 1:0.85. Sixteen of the MF/SS samples were obtained at initial diagnosis and 34 at relapse or persistent/progressive disease. Based on World Health Organization-European Organization for Research and Treatment of Cancer and International Society for Cutaneous Lymphomas guidelines (3, 29), 23 patients were classified as SS and 27 as MF. No patient had previously received anti-PD-1 or anti-PD-L1 therapy.
Neoplastic T cells comprised a median of 12.0% of total white cells (range 0.43–88.4%) and a median of 75.5% of total CD4+ T cells (or of Sezary cells + CD4+ T cells in CD4 negative cases) (range 2.56–98.9%). The neoplastic T cells accounted for a median of 50,944 events (range 2,041–385,938). The most commonly altered antigens in the MF/SS cases were CD26 (47/50 cases [94%], including 37/50 [74%] with complete and 10/50 [20%] with partial absence) and CD7 (41/50 [82%], including 25/50 [50%] with complete and 15/50 [30%] with partial absence and 1/50 [2%] with partial bright expression), consistent with the literature (8, 12, 23) (Figure 1B). The number of cases showing altered expression of other antigens were as follows: CD3: 36/50 (72%); CD2: 25/50 (50%); CD5: 16/50 (32%); CD4: 14/50 (28%) (Figure 1B). All cases were CD8 negative.
Overall, abnormal T cells in the 50 initial samples from the MF/SS patients showed significantly higher PD-1 expression than internal normal CD4+ T cells (median [central 95% range] MFI: 538.3 [93.8–5777.9] vs 135.1 [12.4–675.7], p<0.0001) (Figure 1C–D). Among the 50 initial MF/SS samples, no significant difference in PD-1 expression was seen between samples obtained at initial diagnosis and those at relapse/persistent disease (Figure 1D). The residual normal CD4+ T cells in the MF/SS cases showed similar levels of PD-1 expression as the controls (median [central 95% range] MFI: 135.1 [12.4–675.7] vs 156.7 [58.8–360.7], p=NS) (Figure 1D). A strong trend towards higher PD-1 MFI was seen among SS cases as compared to MF cases (median [central 95% range] MFI: 776.8 [91.4–6381.6] vs 363.9 [100.1–2279.4], p=0.05) (Figure 1E). No significant difference in PD-1 MFI was identified between MF/SS cases with a high absolute burden of circulating neoplastic T cells (≥1000/μL) and a low (<1000/μL) one (median [central 95% range] MFI: 615.0 [91.4–6381.6] vs 526.3 [100.1–4186.5], p=NS) among cases with available complete blood cell count information (n=49).
On a case-by-case basis, we found PD-1 to be informative in differentiating abnormal from normal T cell populations when it was expressed at least 1/3 log brighter than corresponding internal normal CD4+ T cells (Figure 1C, 1F). PD-1 expression in the neoplastic T cells was seen at or above this level in 39/50 (78%) of the MF/SS cases (entire population in 36 cases and a distinct major subset [>50%] in 3 cases), making PD-1 the third most common aberrantly expressed antigen behind CD26 and CD7 (Figure 1B, 1F).
PD-1 differentiates Sezary cells from normal CD4+ T cells and significantly aids in accurately detecting Sezary cells in the context of established markers
To assess the utility of PD-1 amongst the pan-T cell antigens and CD26, we first performed a principal component analysis (PCA) to calculate the relative contribution of each antigen in the panel to the separation of abnormal from internal normal CD4+ T cell populations in the MF/SS cases. First, the internal normal CD4+ T cell populations from the MF/SS cases were compared to those in the control samples. These two groups did not show significant separation with PCA (Figure 2A), supporting the internal normal CD4+ T cells as an appropriate control. PCA demonstrated separation of the abnormal T cell populations as a whole from the internal normal CD4+ T cell populations (Figure 2B). The percent contribution of each antigen to the separation of these two groups was evaluated and by PC1, PD-1 ranked 3rd behind CD7 and CD26 (Figure 2C). The PCA was again performed with the removal of one of each of the markers. The degree of separation between the abnormal and internal normal groups visibly decreased when CD7, CD26 and PD-1 were removed from the analysis while no visible change in separation was seen with removal of the other antigens (Figure 2D). The analysis was again performed comparing the abnormal T cell populations from each individual MF/SS case to the internal normal CD4+ T cell populations a whole. By PC1, PD-1 ranked in the top 3 markers in 32/50 (64%) cases and as 1st in 4/50 (8%) cases to the separation of these populations (Supplemental Table 1).
We next assessed PD-1 expression in MF/SS cases in which population separation was limited using standard Sezary markers. We identified 26 MF/SS cases in our cohort in which the abnormal T cell populations demonstrated few (≤4) and, aside from CD7 and CD26, subtle aberrations in the remaining markers in our panel (Figure 3). PD-1 overexpression clearly distinguished the aberrant T cell populations from internal normal CD4+ ones in 15 of these 26 more challenging cases (58%, 30% of total cases) (Figure 3). Among these 15 cases, 9, 3 and 1 cases demonstrated aberrations in only 3, 2 or 1 antigens (apart from PD-1), respectively. Additionally, 8 and 1 of these 15 cases showed largely normal CD7 and CD26 expression, respectively, although in all cases some overlap in CD7 and CD26 expression between normal and abnormal populations was seen. In 6 of these 15 cases (12% of total cases), the remaining phenotypic alterations were so subtle that the aberrant populations could easily have been missed without PD-1. Indeed, when these 6 cases were evaluated and gated both with and without PD-1 in a blinded fashion, a >10% difference in the size of the gated populations was identified in 2 cases (4% of total) (Figure 3C) while in 2 other cases (4%), gating was virtually impossible without the use of PD-1 (Figure 3D). Of note, when these 15 challenging cases were individually compared to the internal normal CD4+ T cell group using PCA, PD-1 ranked 1st in 4 cases, 2nd in 5 cases and 3rd in 6 cases to population separation, supporting our visual observations.
TCR Vβ analysis of the aberrant T cell populations by flow cytometry was performed on 8 patients (concurrent sample in 2 patients, prior/subsequent sample in 6), including 5 with subtle phenotypes, all of which showed restricted (5/8) or deficient (3/8) Vβ usage, supporting monoclonality (Figures 1B, 3C–D). TCR gene rearrangement performed on 23 patients (concurrent sample in 15, prior/subsequent blood sample in 8) all demonstrated clonal rearrangements with clonal peaks similar to those identified in skin in 16 of 17 patients in which TCR gene rearrangement was performed on a skin sample (1 skin biopsy lacked a detectable clonal TCR gene rearrangement) (Figure 1B).
PD-1 expression in Sezary cells is largely stable over time in blood and bone marrow
Lastly, we assessed the stability of PD-1 over time in blood and bone marrow samples (Figure 4). In total, 34 patients had at least 2 subsequent peripheral blood and/or bone marrow samples containing similar aberrant T cell populations available for analysis. In 18 of the 28 patients (64%) in which PD-1 was informative (≥1/3 log brighter than internal normal CD4+ T cells) in the initial sample, PD-1 expression in the aberrant T cell populations remained informative in all subsequent samples. In 4 patients, PD-1 was ~1/3 to ~1/2 log brighter than corresponding internal normal CD4+ T cells in the initial sample, which diminished below 1/3 log over time. In 3 patients, new PD-1 negative subsets emerged in subsequent samples while the original PD-1 positive population proportionally diminished. In 1 patient, PD-1 positive and PD-1 negative subsets were present initially, the proportions of which fluctuated over time, with the PD-1 positive subset being undetectable in rare cases. In 1 of the 6 patients (17%) in which PD-1 was not informative in the initial sample, PD-1 expression increased (>1/3 log brighter than internal normal CD4+ T cells) in subsequent samples. In total, PD-1 expression status remained the same over time in 68% of patients.
Discussion
Although accurate detection of circulating Sezary cells is critical for prognostic and therapeutic evaluation in MF/SS, it can be difficult with recommended flow cytometric techniques and standard markers. Recent guidelines from a panel of flow cytometry experts recommended use of composite immunophenotypes to identify and quantify Sezary cells using a minimum of 6 markers (CD45, CD3, CD4, CD8, CD7, CD26) (12). However, even with such strategies, accurate Sezary cell detection can be challenging for several reasons, including the fact that standard markers (aside from CD7 and CD26) are often subtly altered and aberrations of virtually all routine markers (particularly CD7 and CD26) can be seen in normal T cell subsets. Indeed, despite having a large panel that could accommodate all pan T cell antigens and CD26, we found that over half of our cases were challenging due to few and subtle alterations of these markers. As we found no clear, distinct overexpression of PD-1 in normal T cells in blood, such aberration was highly suggestive of a neoplastic population, which then required confirmation and gate refinement with the remaining antigens. As such, PD-1 overexpression quickly and efficiently indicated the presence of an abnormal population, helped distinguish normal T cell subsets with differential expression of the other markers from a truly abnormal population, and provided better separation of abnormal from normal populations for improved gating and quantification when used in conjunction with the remaining antigens. Indeed, in 12% of cases, PD-1 was critical for accurate Sezary cell identification, without which accurate gating and quantification were significantly affected or nearly impossible. Our PCA also supported a high level of contribution of PD-1 to our panel of markers for distinguishing Sezary cells from normal CD4+ T cells both globally and on an individual case basis. While we recognize that a PCA may not fully reflect the practical utility of the markers in this context, it can act as another means to assess relative contributions of multiple antigens in an objective and quantitative manner and support our visual assessment, as has been done similarly in other studies (30, 31). We also note that while such automatic population separator (APS) tools can provide such type of valuable data, we do not believe APS gating is sufficient for identification of abnormal populations. More sophisticated computational tools such as artificial intelligence or stochastic neighbor embedding (SNE) variations, as used by other groups (32, 33), may be helpful but were not attempted in this study.
Peripheral blood flow cytometric analysis is also important for distinguishing patients with MF/SS from those with benign inflammatory skin conditions, which in some cases can be challenging using clinical presentation and skin histology alone. As some increased PD-1 expression has been shown in reactive T cells in inflammatory conditions, including infections (34), autoimmune disease (35) and other cancers (36), it was prudent to ensure PD-1 overexpression was not a feature of reactive change. Our control group consisted entirely of patients with dermatitis (n= 9) and/or a history of other cancer (n=14), which are inflammatory conditions. As previously mentioned, we did not observe clear, distinct populations of normal CD4+ T cells with PD-1 overexpression in our control group and PD-1 expression did not significantly differ between the control and internal normal CD4+ T cells (which similarly may be expected to have reactive change in the setting of concurrent MF/SS) in MFI or by PCA. Given these findings, our control populations are likely adequately reflective of reactive states.
Flow cytometric clonality assays, including TCR Vβ repertoire and, more recently, TRBC1 have shown to be useful tools for Sezary cell assessment (37, 38). These assays use restricted or deficient expression of the variable or constant regions of the T cell receptor to infer clonality. While these assays are useful for confirming the clonality of an immunophenotypically aberrant population, they can be problematic when used alone as clonal but reactive (non-neoplastic) T cell populations are not uncommon, particularly in reactive conditions such as a chronic rash, and can include CD4+/CD7-/CD26- populations (38–40). As flow cytometry is important for distinguishing patients with MF/SS from those with benign inflammatory skin conditions, extreme care must be taken to not interpret such benign clonal populations as abnormal in these patients. Thus, accurate Sezary cell detection still requires phenotypic assessment and markers like PD-1 that can aid in distinguishing abnormal from normal populations.
Our longitudinal analysis found that PD-1 expression remained stable over time in most patients. The etiology of the PD-1 status change seen in a minority of patients is uncertain (discussed below), but we saw no obvious association with timing or types of therapy. We saw a variable effect on Sezary cell detection among the few cases in which PD-1 resolution diminished over time. Population identification was most troublesome in the cases in which the remainder of the phenotypic alterations were subtle and the populations small. However, abnormal populations could be identified mostly because they had other alterations and a previously defined abnormal phenotype. In the most challenging cases, TCR Vβ repertoire or TRBC1 analysis may be helpful.
Interestingly, we found a strong trend towards higher PD-1 expression in clinically defined SS compared to MF, which did not reach statistical significance, but no difference in PD-1 expression between high and low-level disease or between initial and relapse/persistent disease. A greater degree of PD-1 positivity in SS as compared to MF has been described (17), although other studies have demonstrated similar levels of PD-1 expression (18, 22, 23, 41). However, even among studies showing overall similar PD-1 expression levels, some have reported trends toward higher PD-1 positivity in SS cases (22, 23, 41). While it has been suggested that this difference in PD-1 expression may reflect a differing underlying biology of these two entities (17), a recent study demonstrated genetic commonalities between MF and SS, suggesting they may represent two extremes of the same disease (42). This study also showed a correlation between lower-level PD-1 protein expression, a proliferative phenotype, and a high frequency of alterations of PDCD1, the gene that encodes PD-1, in MF and SS while higher level PD-1 expression correlated with a non-proliferative phenotype and a low frequency of PDCD1 alterations. PD-1 deletions also increased in frequency with increasing stage and were associated with shorter overall survival in both MF and SS. The authors suggested that PD-1 expression may in fact indicate disease progression and aggressiveness rather than a unique cell of origin in MF and SS. Although the aim of our study was the diagnostic rather than the prognostic value of PD-1, these results may explain the somewhat heterogeneous PD-1 expression seen in our cases as well as the diminishment of PD-1 over time in a few patients. While it suggests PD-1 could function as an important prognostic biomarker, further work and additional validation are needed to assess the prognostic or biologic utility of PD-1.
In summary, we show that PD-1 is commonly overexpressed in circulating Sezary cells, significantly contributes to accurate Sezary cell detection by flow cytometry in the context of pan T cell antigens and CD26, and is largely stable over time in blood and bone marrow. We recommend use of PD-1 in flow cytometry panels for Sezary cell assessment.
Supplementary Material
Acknowledgements:
This work was supported in part through the NIH/NCI Cancer Center Support Grant P30 CA008748, NIH/NCI MSK Lymphoma SPORE P50 CA192937 (A.D.) and Farmer Family Foundation (A.D.).
N.E.L. consults and is on an advisory board for United States Drug Testing Laboratories. A.J.M. has received research support from ADC Therapeutics, Beigene, Miragen, Seattle Genetics, Merck, Bristol-Myers Squibb, and Incyte and honoraria from Janpix Ltd., Merck, Seattle Genetics, and Takeda. S.M.H has received research support for clinical trials from ADC Therapeutics, Affimed, Celgene, Daiichi Sankyo, Kyowa Hakko Kirin, Millennium /Takeda, Seattle Genetics, Trillium Therapeutics, and Verastem/SecuraBio and has consulted for, received honorarium from, or participated on advisory boards for Acrotech Biopharma, C4 Therapeutics, Kyowa Hakko Kirin, Myeloid Therapeutics, ONO Pharmaceuticals, Seattle Genetics, SecuraBio, Shoreline Biosciences, Inc., Takeda, Trillium Therapeutics, Tubulis, and Vividion Therapeutics. A.D. has received personal consultancy fees from Roche, Corvus Pharmaceuticals, Physicians’ Education Resource, Seattle Genetics, Peerview Institute, Abbvie, Takeda and EUSA Pharma and research support from Roche and Takeda. M.R. participates in a scientific advisory board for and has equity in Auron Therapeutics, Inc., has received research support from Cellularity, Roche-Genentech, Beat AML, and Bayer and has received consultancy fees from Peerview Institute, Celgene and Physicians’ Education Resource.
Footnotes
Conflicts of Interest: The remaining authors declare no competing financial interests related to this work.
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