REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
Escherichia coli: strain OP50-1 | CGC | OP50-1 https://cgc.umn.edu/strain/OP50-1 |
Chemicals, peptides, and recombinant proteins | ||
all-trans-retinal | Sigma-Aldrich | Cat# R2500-25MG |
Deposited data | ||
Original data | Mendeley Data | https://doi.org/10.17632/sp25w5kxvd.1 |
Experimental models: Organisms/strains | ||
wild-type strain | Caenorhabditis Genetics Center (CGC) | N2 https://cgc.umn.edu/strain/N2 |
ceh-17(np1) Ⅰ; fln-2(ot611) X | CGC | IB16 https://cgc.umn.edu/strain/IB16 |
ceh-17(np1) Ⅰ | This study | SLP769 |
ceh-14(ch3) X; fln-2(ot611) X | CGC | TB528 https://cgc.umn.edu/strain/TB528 |
lite-1(ce314) X; wtfIs5[Prab-3::NLS::GcaMP6s; Prab-3::NLS::tagRFP] | (Hallinen et al., 2021) | AML70 https://cgc.umn.edu/strain/AML70 |
hpIs459[Punc-4-GCaMP6s::mCherry + lin-15( + )] | (Gao et al., 2018) | ZM8428 https://cgc.umn.edu/strain/ZM8428 |
hpIs587 [Pflp-14::GcaMP6::mCherry, lin-15( + )] | (Lim et al., 2016) | ZM9078 https://cgc.umn.edu/strain/ZM9078 |
ceh-17(np1) Ⅰ; lite-1(ce314) X; wtfIs5[Prab-3:: NLS::GcaMP6s + Prab-3::NLS::tagRFP] | This study | SLP930 |
remEx394[Pver-3::ChR2(C128S)::GFP] | This study | SLP983 |
remEx396[Plet-23::GcaMP6s, Plet-23::mCherry] | This study | SLP984 |
Recombinant DNA | ||
Prab-3::NLS::GCaMP6s, Prab-3::NLS::GCaMP6s | Addgene | RRID:Addgene_68119; http://n2t.net/addgene:68119 |
pJH2447 | Gift from Mei Zhen | pJH2447 |
pDONR201 | Gift from Yuichi Iino | pDONR201 |
pPD-DEST | Gift from Yuichi Iino | pPD-DEST |
pENTR-Pver-3 | This study | pYH343 |
pENTR-Plet-23 | This study | pYH344 |
pENTR-Pceh-17 | This study | pYH251 |
pPD-DEST-GCaMP6s | This study | pYh340 |
pPD-DEST-mCherry | This study | pYH12 |
pPD-DEST-ChR2(C128S)::GFP | This study | pYH110 |
Pver-3::ChR2(C128S)::GFP | This study | pYH348 |
Plet-23::GCaMP6s | This study | pYH346 |
Plet-23::mCherry | This study | pYH350 |
Pceh-17::ChR2(C128S)::GFP | This study | pYH342 |
Software and algorithms | ||
Python (version 3.9) | RRID: SCR_008394; https://www.python.org/ |
|
Igor Pro 8 | WaveMetrics, USA | RRID:SCR_000325; https://www.wavemetrics.com/ |
SPSS (version 28.0) | IBM, USA | RRID:SCR_019096; https://www.ibm.com/products/spss-statistics |
Fiji | NIH, USA | RRID:SCR_002285; https://fiji.sc/ |
Script for Ca2+ imaging analysis | This study; GitHub | https://github.com/hayashi-laboratory/Worm_Ca_imaging |
Script for behavioral analysis | This study; GitHub | https://github.com/hayashi-laboratory/Worm_behavior_analysis |
Script for optogenetics | This study; GitHub | https://github.com/hayashi-laboratory/Worm_optogenetics |