| ##fileDate |
Creation date of the VCF file |
Date (ISO 8601, YYYYMMDD) |
##fileDate=20120921 |
1 |
| ##bioinformatics_source |
Chains of bioinformatics tools for creating the VCF file |
URL, DOI |
##bioinformatics_source=“
doi.org/10.1038/s41588-018-0266-x” |
1 |
| ##reference_ac |
Accession number of reference genome assembly used in the VCF file |
/[(GCA/GCF)_(d){9}\.(0-9)*]/ |
##reference_ac=GCA_902498975.1 |
1 |
| ##reference_url |
URL of the reference genome assembly used in the VCF file |
URL, DOI |
##reference_url=“
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/498/975/GCA_902498975.1_Morex_v2.0/GCA_902498975.1_Morex_v2.0_genomic.fna.gz” |
1 |
| ##contig |
Metadata about a single sequence in the reference genome assembly |
Composite (see below) |
##contig=<ID=chr1H,length=522466905,assembly=GCA_902498975.1,md5=8d21a35cc68340ecf40e2a8dec9428fa,species=NCBITaxon:4513> |
1:N |
|
The primary identifier of the sequence |
String |
ID=chr1H |
1 |
|
The length in base pairs (bp) of the sequence |
Integer |
length=522466905 |
1 |
|
The assembly accession number this sequence belongs to |
/[(GCA/GCF)_(d){9}\.(0-9)*]/ |
assembly=GCA_902498975.1 |
1 |
|
The md5 checksum of the sequence |
MD5 |
md5=8d21a35cc68340ecf40e2a8dec9428fa |
1 |
|
The species of the sequence (NCBI Taxon ID) |
/[(NCBITaxon):(\d+)]/ |
species=NCBITaxon:4513 |
1 |
| ##SAMPLE |
Metadata about a single sample genotype that is part of the genotyping experiment in the VCF file |
Composite (see below) |
##SAMPLE=<ID=SAMEA104646767,DOI=“
doi.org/10.25642/IPK/GBIS/7811152”> |
1:N |
|
The primary identifier (BioSamples Database identifier) of the genotyping sample |
/[(SAM)(E|N|D)(A|G)(\d+)]/ |
ID=SAMEA104646767 |
1 |
|
The DOI of the genotyping sample (if available) |
URL, DOI |
DOI=“
doi.org/10.25642/IPK/GBIS/7811152” |
0-1 |
|
The external identifiers under which this genotyping sample is registered in other databases (either ‘FAO-WIEWS_instcode:genus:accession_number’ or ‘DNS:database_identifier:identifier_scheme:identifier’) |
See Definition |
ext_ID=“DEU146:Hordeum:HOR 1361 BRG” or ext_ID=“ipk-gatersleben.de:GBIS:akzessionId:7811152” |
0:N |
