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. 2022 Jun 23;603:127813. doi: 10.1016/j.physa.2022.127813

A fractional–order model with different strains of COVID-19

Isa Abdullahi Baba a,, Fathalla A Rihan b,c
PMCID: PMC9221295  PMID: 35765370

Abstract

This study examines the dynamics of COVID-19 variants using a Caputo–Fabrizio fractional order model. The reproduction ratio R0 and equilibrium solutions are determined. The purpose of this article is to use a non-integer order derivative in order to present information about the model solutions, uniqueness, and existence using a fixed point theory. A detailed analysis of the existence and uniqueness of the model solution is conducted using fixed point theory. For the computation of the iterative solution of the model, the fractional Adams–Bashforth method is used. Using the estimated values of the model parameters, numerical results are used to support the significance of the fractional-order derivative. The graphs provide useful information about the complexity of the model, and provide reliable information about the model for any case, integer or non-integer. Also, we demonstrate that any variant with the largest basic reproduction ratio will automatically outperform the other variant.

Keywords: COVID-19 variants, Caputo–Fabrizio, Adams–Bashforth technique, Existence and uniqueness, Numerical scheme

1. Introduction

Pathogen mutation has been a common phenomenon in disease spreading. Typical example can be seen from the emergence of H1N1 influenza virus in Mexico and the USA in the year 2009. H1N1 is the mutation of the seasonal influenza. Dengue fever, HIV, Tuberculosis, and some other sexually transmitted diseases come to existence as a result of more than one pathogen variants. Many researchers studied the dynamical nature of the pathogen–host interactions with more than one variant [1], [2], [3], [4]. It is also shown basic reproduction ratio decides which variant outperforms the other [5]. Possibility of mutation,co-infection, and exponential growth of the host population were studied [6], [7], [8], [9].

The global transmission and replication of SARSCOV-2, the causative agent of COVID-19 disease, gives rise to the mutations of the virus. This may alter the virus’ mode of transmission, the vaccines’ effectiveness and the severity of disease. Many variants surfaced, some of which have been identified by World Health Organization (WHO) as variants of concern (VOC). This is as result of the risks they pose and their ability to impact the effectiveness of the available vaccine [10], [11], [12], [13], [14], [15], [16], [17].

The generalization of classical integer calculus is the Fractional calculus. Due to hereditary properties and provision of a good description of the memory fractional order derivatives and fractional integrals play important role in the study of fractional calculus. Nowadays, FO differential equations are frequently used in exploring the dynamics of many real life phenomena [18], [19], [20], [21], [22], [23], [24]. Caputo–Fabrizio (CF) fractional derivative fractional order derivative was developed in 2015. This fractional order derivative is based on exponential kernel and the detail on the operator can be found in [25]. Many problems used Caputo–Fabrizio derivative to model problems in various fields [26], [27], [28]. The fundamental differences among the fractional derivatives are their different kernels which can be selected to meet the requirements of different applications. For example, the main differences between the Caputo fractional derivative, the Caputo–Fabrizio derivative, and the Atangana–Baleanu fractional derivative are that the Caputo derivative is defined using a power law, the Caputo–Fabrizio derivative is defined using an exponential decay law, and the Atangana–Baleanu derivative is defined using a Mittag-Leffler​ law [29], [30], [31]. Atangana found that the power law derivative of the Riemann–Liouville fractional derivative or the Caputo–Fabrizio fractional derivative provides noisy information due to its specific memory properties. However, the Caputo–Fabrizio fractional derivative gives less noise than the Riemann–Liouville [32], [33], [34]. Hence, in this research we choose Caputo–Fabrizio fractional derivative.

Here, we consider two variants of COVID-19 in which one variant is a mutation of the other. A mutation is the sudden change in the genetic makeup that occurs either due to mistakes when DNA is copied or as a result of environmental factors. In this research new variant is assumed to be as a result of changes in the proteins that made up old variant. Due to the recent progress on fractional calculus and its wide applications, we intend to formulate and analyzed our model with Caputo–Fabrizio fractional derivative. The primary goal of this article is to use a fresh non-integer order derivative to study the model of COVID-19, to present information about the model solution’s, uniqueness and existence using a fixed point theory. It is also in our interest to formally examine the mathematical implications of linking the various infectious compartments in a sufficiently general manner.

The paper is divided into six sections: Section 1 is an introduction, Section 2 is a glossary of terms, Section 3 is the model formulation, Section 4 is a study of the existence and uniqueness of the model’s solution, Section 5 is a study of the numerical scheme and numerical simulations of the model, and Section 6 is the paper’s conclusion.

2. Definitions

Definition 1 [29]

Caputo–Fabrizio fractional derivative for fH1a,b,b>a,α[0,1) is defined as;

Dtαft=M(α)1αatfIxexpαtx1αdx.

M(α) is the normalized function that satisfies M0=M1=1. When fIH1a,b the above definition is reduced to;

Dtαft=M(α)1αat(ftf(x))expαtx1αdx.

Definition 2 [29]

Let 0<α<1, and consider;

Dtαft=gt,

then the corresponding α fractional order integral is given as;

Itαft=21α2αMαgt+2α2αMα0tgsds,t0.

3. Formulation of the model

The model consists of six compartments; Susceptible St, Exposed Et, Infected with new variant Int, Infected with old variant Iot, Hospitalized individuals Ht, and Recovered individuals Rt. The total population Nt is defined as;

Nt=St+Et+Int+Iot+Ht+Rt.

The model is described by the system of Caputo–Fabrizio fractional order differential equations of order α below. We modify the fractional operator via an auxiliary parameter Λ>0 to avoid dimensional mismatching.

Λα10CFDtαSt=λβ1SInβ2SIoμS,
Λα10CFDtαEt=β1SIn+β2SIoα1Eα2EμE,
Λα10CFDtαInt=α1Eγ1InμInd1In,
Λα10CFDtαIot=α2Eγ2IoμIod2Io,
Λα10CFDtαHt=γ1In+γ2Ioμ+Φ+d3H, (1)
Λα10CFDtαRt=ΦHμR,

with the following initial conditions;

S0=a1,E0=a2,In0=a3,I00=a4,H0=a5,R0=a6.

The meaning of parameters involved in the model is given in Table 1.

Table 1.

Meaning of parameters.

Parameter Meaning
λ Recruitment rate
μ Natural death rate
β1 Effective contact rate with new variant
β2 Effective contact rate with old variant
α1 Progression from Exposed class to Infective with New variant
α2 Progression from Exposed class to Infective with Old variant
γ1 Hospitalization rate due to new variant
γ2 Hospitalization rate due to old variant
d1 Death rate due to new variant
d2 Death rate due to old variant
d3 Death rate in the hospital
Φ Recovery rate in the hospital

3.1. Equilibria and basic reproduction number

The equilibrium solutions are obtained by solving the following system of equations;

0CFDtαSt=0CFDtαEt=0CFDtαInt=0CFDtαIot=0CFDtαHt=0CFDtαRt=0.

Four equilibrium solutions are obtained; Disease free equilibrium (E0), Endemic with respect to new variant (E1), Endemic with respect to old variant (E2), and Endemic with respect to both variants (E3).

1. The Disease free equilibrium (E0) is given as;

E0=λμ,0,0,0,0,0,

where S0=λμ.

2. Endemic with respect to new variant (E1) is given as;

E1=(S1,E1,In1,Io1,H1,R1)

where,

S1=λβ1In1+μ,E1=β1λα1(β1In1+μ)In1μβ1In1+μ,Io1=0,H1=γ1In1μ+d3+Φ
R1=Φγ1In1μ(μ+d3+Φ),andIn1=μβ1λα1β1μ2(γ1+μ+d1+α12β1)1.

Let,

R1=λα1β1μ2(γ1+μ+d1+α12β1).

Therefore, this equilibrium only exists if R1>1.

3. Endemic equilibrium with respect to old variant (E2) is given as;

E2=S2,E2,In2,Io2,H2,R2,

where,

S2=λβ1Io2+μ,E2=β2λα2(β2Io2+μ)Io2μβ2Io2+μ,In2=0,H2=γ2Io2μ+d3+Φ
R2=Φγ2Io2μ(μ+d3+Φ),andIo2=μβ2λα2β2μ2(γ2+μ+d2+α22β2)1.

Let,

R2=λα2β2μ2(γ2+μ+d2+α22β2).

Therefore, this equilibrium only exists if R2>1.

4. Endemic with respect to both variants (E3) is given as;

E3=S3,E3,In3,Io3,H3,R3,

where,

S3=λγ1+μ+d1(γ2+μ+d2)α1β1γ2+μ+d2+α2β2γ1+μ+d1E3+μγ1+μ+d1(γ2+μ+d2),
In3=α1E3γ1+μ+d1,Io3=α2E3γ2+μ+d2,H3=α1γ1γ2+μ+d2+α2γ2γ1+μ+d1(μ+d3+Φ)γ1+μ+d1(γ2+μ+d2)E3,
R3=Φα1γ1γ2+μ+d2+α2γ2γ1+μ+d1μ(μ+d3+Φ)γ1+μ+d1(γ2+μ+d2)E3,and
E3=λα1+α2+μμγ1+μ+d1(γ2+μ+d2)α1β1γ2+μ+d2+α2β2γ1+μ+d1.

Therefore, this equilibrium only exists if R1+R2>1.

By applying the next generation matrix method presented in [28], basic reproduction ratio (R0) is obtained to be;

R0=R1+R2.

4. Existence and uniqueness of solution

Here we apply fixed-point results to show the existence and uniqueness of the solutions of model (1). Let (1) be re-written in the following form;

0CFDtαSt=F1t,S,
0CFDtαEt=F2t,E,
0CFDtαInt=F3t,In,
0CFDtαIot=F4t,Io,
0CFDtαHt=F5t,H,
0CFDtαRt=F6t,R.

We apply fundamental theorem of Integration to write the system in fractional Volterra form [24]. Applying Caputo–Fabrizio integral operator definition 2, the system above becomes integral equation of Volterra type, with 0<α<1.

StS0=2(1α)2αM(α)F1t,S+2α2αM(α)0tF1η,Sdη,
EtE0=2(1α)2αM(α)F2t,E+2α2αM(α)0tF2η,Edη,
IntIn0=2(1α)2αM(α)F3t,In+2α2αM(α)0tF3η,Indη,
IotIo0=2(1α)2αM(α)F4t,Io+2α2αM(α)0tF4η,Iodη,
HtH0=2(1α)2αM(α)F5t,H+2α2αM(α)0tF5η,Hdη,
RtR0=2(1α)2αM(α)F6t,R+2α2αM(α)0tF6η,Rdη.

Next, is to prove that the kernels F1,,F6 satisfy Lipchitz continuity and subsequently contraction. The following theorem takes care of that;

Theorem 1

The kernel F1 is Lipschitz. Moreover it satisfies contraction if the following inequality is satisfied;

0β1k1+β2k2+μ<1.

Proof

Consider SandS1, then

F1t,SF1t,S1=β1InStS1(t)β2IoStS1(t)μ(StS1(t))β1In(t)StS1(t)+β2Io(t)StS1(t)+μStS1(t)β1k1+β2k2+μStS1(t)L1StS1(t), (2)

where, L1=β1k1+β2k2+μ,k1In(t),k2Io(t),k1andk2 are bounded functions. This implies;

F1t,SF1t,S1L1StS1(t).

Hence F1 is Lipschitz continuous. In addition if 0β1k1+β2k2+μ<1, then we have a contraction.

In the same manner, we show the Lipschitz continuity and subsequent contraction of F2,,F6;

F2t,EF2t,E1L2EtE1(t),F3t,InF3t,In1L3IntIn1(t),F4t,IoF4t,Io1L4IotIo1(t),F5t,HF5t,H1L5HtH1(t),F6t,RF6t,R1L6RtR1(t).

Recursively, the difference between successive terms in (1) is given as;

π1nt=Sn(t)Sn1(t)=2(1α)2αM(α)F1t,Sn1F1t,Sn2+2α2αM(α)0tF1η,Sn1F1η,Sn2dη,
π2nt=En(t)En1(t)=2(1α)2αM(α)F2t,En1F2t,En2+2α2αM(α)0tF2η,En1F2η,En2dη,
π3nt=Inn(t)Inn1(t)=2(1α)2αM(α)F3t,Inn1F3t,Inn2+2α2αM(α)0tF3η,Inn1F3η,Inn2dη,
π4nt=Ion(t)Ion1(t)=2(1α)2αM(α)F4t,Ion1F4t,Ion2+2α2αM(α)0tF4η,Ion1F4η,Ion2dη,
π5nt=Hn(t)Hn1(t)=2(1α)2αM(α)F5t,Hn1F5t,Hn2+2α2αM(α)0tF5η,Hn1F5η,Hn2dη,
π6nt=Rn(t)Rn1(t)=2(1α)2αM(α)F6t,Rn1F6t,Rn2+2α2αM(α)0tF6η,Rn1F6η,Rn2dη,

with the following initial conditions;

S0t=S0,E0t=E0,In0t=In0,Io0t=I00,H0t=H0,R0t=R0. (3)

Considering π1n and taking norm, we get;

π1nt=Sn(t)Sn1(t)=2(1α)2αM(α)F1t,Sn1F1t,Sn2+2α2αM(α)0tF1η,Sn1F1η,Sn2dη.

Applying triangular inequality, we get;

Sn(t)Sn1(t)=2(1α)2αM(α)F1t,Sn1F1t,Sn2+2α2αM(α)0tF1η,Sn1F1η,Sn2dη

From (2), we get

Sn(t)Sn1(t)2(1α)2αM(α)L1Sn1Sn2+2α2αM(α)L10tSn1Sn2dη.

This implies,

π1nt2(1α)2αM(α)L1π1n1t+2α2αM(α)L10tπ1n1tdη.

In the same manner,

π2nt2(1α)2αM(α)L2π2n1t+2α2αM(α)L20tπ2n1tdη,π3nt2(1α)2αM(α)L3π3n1t+2α2αM(α)L30tπ3n1tdη,π4nt2(1α)2αM(α)L4π4n1t+2α2αM(α)L40tπ4n1tdη,π5nt2(1α)2αM(α)L5π5n1t+2α2αM(α)L50tπ5n1tdη,π6nt2(1α)2αM(α)L6π6n1t+2α2αM(α)L60tπ6n1tdη.

Hence, we can write;

Snt=i=1nπ1it,Ent=i=1nπ2it,Innt=i=1nπ3it,Iont=i=1nπ4it,
Hnt=i=1nπ5it,andRnt=i=1nπ6it.

The following theorem confirms the existence of the solution.

Theorem 2

The solution of the model exists if we can find t1 in which the following inequality holds;

2(1α)2αM(α)Li+2αt12αM(α)Li<1,i=1,,6.

Proof

By applying recursive technique on (2), (3), we obtain;

π1ntSn(0)2(1α)2αM(α)L1+2αt2αM(α)L1n,π2ntEn(0)2(1α)2αM(α)L2+2αt2αM(α)L2n,π3ntInn(0)2(1α)2αM(α)L3+2αt2αM(α)L3n,π4ntIon(0)2(1α)2αM(α)L4+2αt2αM(α)L4n,π5ntHn(0)2(1α)2αM(α)L5+2αt2αM(α)L5n,π6ntRn(0)2(1α)2αM(α)L6+2αt2αM(α)L6n.

Therefore, the solutions exist and are continuous. To confirm the functions above construct solutions of (1), we consider;

StS0=SntB1nt,
EtE0=EntB2nt,
IntIn0=InntB3nt,
IotIo0=IontB4nt,
HtH0=HntB5nt,
RtR0=RntB6nt.

Hence,

B1nt=2(1α)2αM(α)F1t,SF1t,Sn1+2α2αM(α)0tF1η,SF1η,Sn1dη2(1α)2αM(α)F1t,SF1t,Sn1+2α2αM(α)0tF1η,SF1η,Sn1dη2(1α)2αM(α)L1SSn1+2α2αM(α)L1SSn1t.

Repeating the same procedure,

B1nt2(1α)2αM(α)+2α2αM(α)tn+1L1n+1b. (4)

At t1, we have;

B1nt2(1α)2αM(α)+2α2αM(α)t1n+1L1n+1b.

Taking limit on (4) as n approaches , we get, B1nt0. Similarly, B2nt,B3nt,B4nt,B5nt,B6nt0.

Lastly, to show the uniqueness of the solutions of the model, we suppose there exist some solutions of the model say; S1(t),E1(t),In1(t),Io1(t),H1(t),R1(t), then

StS1t=2(1α)2αM(α)F1t,SF1t,S1+2α2αM(α)0tF1η,SF1η,S1dη.

Taking norm, we get

StS1t2(1α)2αM(α)F1t,SF1t,S1+2α2αM(α)0tF1η,SF1η,S1dη.

Applying the Lipschitz continuity result, we get

StS1t2(1α)2αM(α)L1StS1t+2αL1t2αM(α)StS1t.

It simplifies to,

StS1t12(1α)2αM(α)L12αL1t2αM(α)0. (5)

Theorem 3

If the condition below holds,

12(1α)2αM(α)L12αL1t2αM(α)>0,

then the solution is unique.

Proof

Consider (5), that is

StS1t12(1α)2αM(α)L12αL1t2αM(α)0,

since,

12(1α)2αM(α)L12αL1t2αM(α)>0,

then

StS1t=0.

This implies,

St=S1t.

This is true for the remaining solutions. Hence, the model solution exists and is unique.

5. Numerical scheme and numerical simulations

In this section, we give an approximate solution of the Caputo–Fabrizio fractional order model for the dynamics of two-strain COVID-19 model using two-step​ fractional Adams–Bash forth technique [25]. We use fundamental theorem of Integration to write the system in fractional Volterra form. Consider the first equation in (1),

StS0=1αM(α)F1t,S+αM(α)0tF1η,Sdη

for t=tj+1,j=0,1,2,, we get

Stj+1S0=1αM(α)F1tj,Sj+αM(α)0tj+1F1t,Sdt.

Hence, the difference in successive terms is given as,

Sj+1Sj=1αM(α)F1tj,SjF1tj1,Sj1+αM(α)tjtj+1F1t,Sdt,

over the interval tk,tk+1. We can approximate F1t,S interpolation polynomial;

Pktftk,ykhttk1ftk1,yk1httk,

where h=tjtj1. Also

tjtj+1F1t,Sdt=tjtj+1F1tj,Sjhttj1F1tj1,Sj1httjdt=3h2F1tj,Sjh2F1tj1,Sj1.

Simplifying, we get

Sj+1=S0+1αM(α)+3h2M(α)F1tj,Sj1αM(α)+αh2M(α)F1tj1,Sj1.

Similarly, we get

Ej+1=E0+1αM(α)+3h2M(α)F2tj,Ej1αM(α)+αh2M(α)F2tj1,Ej1,
In,j+1=In,0+1αM(α)+3h2M(α)F3tj,In,j1αM(α)+αh2M(α)F3tj1,In,j1,
Io,j+1=Io,0+1αM(α)+3h2M(α)F4tj,Io,j1αM(α)+αh2M(α)F4tj1,Io,j1,
Hj+1=H0+1αM(α)+3h2M(α)F5tj,Hj1αM(α)+αh2M(α)F5tj1,Hj1,
Rj+1=R0+1αM(α)+3h2M(α)F6tj,Rj1αM(α)+αh2M(α)F6tj1,Rj1.

We describe the numerical simulations to study the dynamics of the propose model for various values of α[0,1] and mode parameters. The parameter values used are obtained from [30], and they are; λ=400,β1=1.7×105,β2=1.7×105,μ=5×104,α1=2×104,α2=2×104,γ1=1.6979×101,γ2=1.6979×101,d1=9.6×103,d2=9.6×103,d3=1×106,Φ=0.06,α0,1.

Fig. 1, Fig. 2, Fig. 3, Fig. 4, Fig. 5, Fig. 6, show the influence of the variation in the fractional order α on the biological behavior of the classes of model (1). It is clear from these Figures that the population of Susceptible individuals, Exposed individuals, New variant of COVID-19, Old variant of COVID-19, Hospitalized individuals and Recovered individuals have decreasing effect when α is decreased from 10.2.

Fig. 1.

Fig. 1

Dynamics of Susceptible individuals for various values of α.

Fig. 2.

Fig. 2

Dynamics of Exposed individuals for various values of α.

Fig. 3.

Fig. 3

Dynamics of new variant of COVID-19 for various values of α.

Fig. 4.

Fig. 4

Dynamics of old variant of COVID-19 for various values of α.

Fig. 5.

Fig. 5

Dynamics of hospitalized individuals for various values of α.

Fig. 6.

Fig. 6

Dynamics of Recovered individuals for various values of α.

Fig. 7 compares the dynamics of new and old strain of COVID-19. This figure shows that the two variants can co-exist in the same population when their basic reproduction ratio is the same.

Fig. 7.

Fig. 7

Dynamics of new and old variants of COVID-19..

Fig. 8 shows that when R1>R2, then the new variant of COVID-19 outperform the old variant which leads to subsequent domination of the old variant by the new variant.

Fig. 8.

Fig. 8

Dynamics of new and old variants of COVID-19 when R1>R2.

Fig. 9 shows that when R2>R1, then the old variant of COVID-19 outperform the new variant which leads to subsequent domination of the new variant by the old variant.

Fig. 9.

Fig. 9

Dynamics of new and old variants of COVID-19 when R2>R1.

It worth mentioning here that the fractional derivative with​ α0,1 is defined in Caputo–Fabrizio sense, so introducing a convolution integral with a power-law memory kernel benefits in describing memory effects in dynamical systems. The decaying rate of the memory kernel depends on α. A lower value of α corresponding to more slowly-decaying time-correlation functions leads a long memory. Therefore, as α1, the influence of memory decreases.

6. Conclusion

The dynamics of COVID-19 variations were explored using a Caputo–Fabrizio fractional-order model. The model’s fundamental properties were studied. The next-generation matrix (NGM) approach was used to calculate the basic reproduction ratio R0. Equilibrium solutions are found by equating system (1) to zero and simultaneously solving the result. Fixed point theory is used to perform a detailed study of the existence and uniqueness of the model solution. The iterative solution of the model is computed using the fractional Adams–Bashforth technique. The numerical results are shown using the estimated values of the model parameters to justify the importance of the fractional-order derivative. The graphs provide useful information about the model’s complexity and the feasibility of obtaining reliable information about it.

CRediT authorship contribution statement

Isa Abdullahi Baba: Visualization, Investigation, Supervision, Software, Validation, Writing – review & editing. Fathalla A. Rihan: Conceptualization, Methodology, Software, Data curation, Writing – original draft.

Declaration of Competing Interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Acknowledgments

Funding

This research received no external funding.

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