Abstract
Purpose
To develop and evaluate an improved strategy for compensating concomitant field effects in non‐Cartesian MRI at the time of image reconstruction.
Theory
We present a higher‐order reconstruction method, denoted as MaxGIRF, for non‐Cartesian imaging that simultaneously corrects off‐resonance, concomitant fields, and trajectory errors without requiring specialized hardware. Gradient impulse response functions are used to predict actual gradient waveforms, which are in turn used to estimate the spatiotemporally varying concomitant fields based on analytic expressions. The result, in combination with a reference field map, is an encoding matrix that incorporates a correction for all three effects.
Methods
The MaxGIRF reconstruction is applied to noiseless phantom simulations, spiral gradient‐echo imaging of an International Society for Magnetic Resonance in Medicine/National Institute of Standards and Technology phantom, and axial and sagittal multislice spiral spin‐echo imaging of a healthy volunteer at 0.55 T. The MaxGIRF reconstruction was compared against previously established concomitant field‐compensation and image‐correction methods. Reconstructed images are evaluated qualitatively and quantitatively using normalized RMS error. Finally, a low‐rank approximation of MaxGIRF is used to reduce computational burden. The accuracy of the low‐rank approximation is studied as a function of minimum rank.
Results
The MaxGIRF reconstruction successfully mitigated blurring artifacts both in phantoms and in vivo and was effective in regions where concomitant fields counteract static off‐resonance, superior to the comparator method. A minimum rank of 8 and 30 for axial and sagittal scans, respectively, gave less than 2% error compared with the full‐rank reconstruction.
Conclusions
The MaxGIRF reconstruction simultaneously corrects off‐resonance, trajectory errors, and concomitant field effects. The impact of this method is greatest when imaging with longer readouts and/or at lower field strength.
Keywords: concomitant fields, expanded signal model, gradient distortion, gradient impulse response function, MRI reconstruction
Short abstract
Click here for author‐reader discussions
1. INTRODUCTION
Image quality from MRI that uses non‐Cartesian sampling, particularly spirals, has improved continuously over the past 30 years. Current state‐of‐the‐art spiral MRI provides quality that is comparable to its 2D/3D Cartesian counterparts, and is appropriate for clinical use. 1 , 2 Spiral acquisitions are attractive because they provide high scan and SNR efficiency, robustness to motion artifacts, and are advantageous for fast imaging applications such as MR fingerprinting 3 , 4 and cardiac imaging. 5
Spiral imaging requires overcoming unique challenges, notably off‐resonance, gradient distortion, and concomitant field effects. The first two effects are well known in the literature; static off‐resonance leads to local blurring, and gradient distortion results in trajectory errors that manifest themselves as halo artifacts near edges. The effects of concomitant fields are less widely recognized, but are extremely important for long readouts, scan planes farther from isocenter, and at low B0 field strengths. Concomitant fields constitute an additional nonrotating magnetic field (, ) in the laboratory reference frame whenever linear gradients are active. 6 Spatial encoding in MRI is achieved by the Larmor frequency, which is proportional to the magnitude of the applied magnetic field. The applied magnetic field is a superposition of the homogeneous () main magnetic field and the transverse field and longitudinal field produced by a gradient coil. The dot product of three gradient fields with a spatial position causes a linear frequency offset. In contrast, the transverse component contributes a nonlinear, higher‐order frequency offset, which is represented as a sum of products of quadratic gradients with higher‐order spatial terms (eg, ). Therefore, spiral imaging accrues a spatiotemporally varying phase due to concomitant fields in addition to static off‐resonance. 7
Several previous works successfully mitigated concomitant field effects by means of image reconstruction method. 7 , 8 , 9 King et al 7 proposed a concomitant field‐correction method based on frequency‐segmented deblurring, referred to here as King's method. This approach uses approximations to separate the concomitant field phase into a time‐dependent parameter consisting of the time integral of common gradient terms and the rest as a time‐independent frequency offset. King's method then performs frequency‐segmented deblurring. Two recent approaches by Chen et al 8 and Cheng et al 9 achieved a more computationally efficient reconstruction and simultaneously corrected static off‐resonance and concomitant fields based on King's approximations.
Wilm et al 10 proposed a powerful general approach using NMR field probes 11 , 12 in conjunction with a higher‐order encoding model, which inspires this work. This approach incorporates higher‐order dynamic fields to the encoding process and has demonstrated excellent image quality for several applications, including diffusion 10 , 13 and structural imaging. 14 A dynamic field camera 15 , 16 consisting of spatially distributed NMR field probes is used to measure phase evolutions at various positions for high‐order field expansions with globally smooth functions. 10 , 13 , 17 The NMR field probes provide real‐time monitoring of field evolutions from various sources; however, commercially available systems are fairly expensive, and building an in‐house system from scratch requires expertise beyond most MRI labs. 11 , 16 , 18 , 19 , 20 Therefore, although very promising, the higher‐order approach relying on field‐camera measurements is not widely available.
The characterization of gradient distortions with gradient impulse response functions (GIRFs) 21 , 22 can be a reasonable surrogate for NMR field probes. Assuming a linear time invariant system model for the gradient chain, GIRFs capture gradient delays, eddy current effects, and mechanically induced field oscillations. For each gradient axis, an MR system is perturbed with a set of input gradients, and field responses are measured with either a dynamic field camera or phantom‐based methods. Field‐camera measurements provide both self‐responses and cross‐responses (eg, input gradient on the x‐axis and field response on the y‐axis) in a single measurement, thereby allowing the full characterization of a multiple‐input, multiple‐output linear time invariant system. 22 , 23 On the other hand, phantom‐based methods typically measure only self‐term GIRFs 24 and cross‐terms. 25 Phantom‐based GIRFs have proven to be effective in several applications, including RF pulse design, 26 , 27 eddy current–induced artifact correction, 28 and image reconstruction. 29 , 30 , 31 Therefore, the phantom‐based method appears to be a reasonable compromise to an accurate, albeit expensive field monitoring device.
In this work, because concomitant fields are analytically expressed with gradients and spatial coordinates, we hypothesize that gradients predicted with phantom‐based GIRFs can better estimate concomitant fields than nominal gradients. Following this, we propose a novel higher‐order image reconstruction method, denoted as MaxGIRF, which incorporates concomitant fields, static off‐resonance, and GIRF trajectory corrections. The “Max” part of the MaxGIRF acronym reflects the fact that the concomitant fields are also known as “Maxwell fields” in the literature, because they are based on the principles of electromagnetism described by Maxwell's equations. This proposed framework can be considered as a surrogate to NMR field probes that require no special hardware but require a good analytic model of concomitant fields that depends on coil geometry 6 , 32 and severity of gradient nonlinearity. 33 Non‐Cartesian imaging with long readouts generally benefits from this method, but its impact will be greatest at high‐performance low‐field systems, 34 , 35 because the effect of concomitant fields scales quadratically with the maximum gradient amplitude and inversely to the main magnetic field .
We first validate the proposed method using noiseless simulations at various field strengths and off‐center positions. A guideline for selecting an optimal rank is provided when a low‐rank approximation is applied to the MaxGIRF encoding model. The MaxGIRF reconstructions using nominal and GIRF‐predicted gradients are compared at 0.55 T using an International Society for Magnetic Resonance in Medicine (ISMRM)/National Institute of Standards and Technology (NIST) system phantom. Finally, MaxGIRF reconstructions are demonstrated in vivo using axial and sagittal spiral spin‐echo data of the head and neck, and made available open source.
2. THEORY
In this work, we address sequences in which the net phase of all isochromats within a voxel before the next RF pulse can be ignored, such as any pulse sequences with spoiler gradients at the end of each TR.
2.1. The MaxGIRF encoding
Figure 1 illustrates the overall steps to calculate MaxGIRF encoding matrices. Let and be the gradients in the logical coordinate system and physical coordinate system, respectively. Unless clearly specified, we use the physical coordinate system exclusively and describe variables without the subscript for clarity (eg, ). Using a modified version of the expanded signal model, 10 , 23 , 36 the measured ‐space data over the region‐of‐interest is expressed as
(1) |
where denotes the th interleaf, th receive coil ‐space data of the target image ; is the receive coil sensitivity at position of the th coil; is the time‐varying phase of a voxel at position in radians; and denotes the measurement noise. The indices and count the interleaves and receive coils, respectively. The MaxGIRF approach models the magnitude of the spatiotemporal magnetic field as a sum of gradients in millitesla per meter, static off‐resonance in hertz, and concomitant fields in tesla 6 , as follows:
(2) |
where counts the concomitant field terms; is the th concomitant field basis function (in squared meters or cubed meters); and is the th dynamic coefficient (in Tesla squared meters or Tesla cubed meters), expressed as a function of the th gradient waveforms; and is the gyromagnetic ratio (in radians per second per Tesla). Analytic expressions of and for a symmetric gradient system used in this study 6 are given in Table 1. The linear gradients are described as the first three terms in the concomitant field basis functions. Note that linear gradients can be either GIRF‐predicted gradients or nominal gradients . Time integration of the magnetic field (after the demodulation of its carrier frequency) multiplied by the gyromagnetic ratio , , then gives the phase evolution of a voxel at position as follows:
(3) |
where is the th phase coefficient obtained by ; and denotes a phase term consisting of static off‐resonance and concomitant fields. Note that the reference time point starts at the isodelay of an RF pulse for gradient‐echo pulse sequences and the TE for spin‐echo pulse sequences when spiral readouts start at TE. Let denote the number of ‐space samples per interleaf. Let be a 3 3 orthogonal transformation matrix from the logical coordinate system to the physical coordinate system. Note that . Then we obtain
(4a) |
(4b) |
where represents the offset of a scan plane from isocenter in the physical coordinate system. With Eqs. 4a and 4b, we can express the k‐space phase in terms of variables in the logical coordinate system as follows:
(5) |
The received signal can be expressed using variables both in the logical and physical coordinate systems, as follows:
(6) |
Equation 6 indicates that measured ‐space data are modulated by a time‐varying phase term due to a slice offset. If this time‐varying phase term is not compensated during data acquisition, 37 then the received signal must be demodulated first before further processing, because concomitant field correction would not be accurate when voxels are displaced from their true locations. Note that a Fourier matrix is computed with the gradients in the logical coordinate system, as done in conventional fast Fourier transforms (FFT)/nonuniform fast Fourier transform (NUFFT), and a higher‐order encoding matrix is computed with ‐space trajectories and spatial coordinates in the physical coordinate system. See Supporting Information Text S1 for details about the coordinate transformations.
TABLE 1.
Concomitant field basis functions | Dynamic coefficients | Type | ||
---|---|---|---|---|
|
|
Gradient | ||
|
|
|||
|
|
|||
|
|
Lowest order | ||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
order | ||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
|||
|
|
Suppose that an underlying object can be represented as a weighted sum of ideal voxel shapes defined on an Cartesian grid (ie, ). Inserting this representation into Eq. 1 and discretizing in time leads to
(7) |
where contains the th interleaf, th coil (demodulated) ‐space data; denotes the th encoding matrix; is a diagonal matrix containing the receive coil sensitivities of the th coil; is a vector of complex image values; and contains the th interleaf, th coil measurement noise. The th encoding matrix is expressed as the Hadamard product (element‐wise multiplication, denoted as ) of a Fourier matrix containing only linear phase terms and a higher‐order encoding matrix containing other remaining phase terms:
(8) |
where
(9) |
and
(10) |
It is important to note that the forward signal model in Eq. 1 is described with the forward Fourier transform as commonly done in standard textbooks, but the choice of FFT versus inverse FFT for transforming k‐space data to an image that is vendor‐specific, and critical for a successful implementation. 7 , 38
2.2. Image reconstruction
Image reconstruction for MaxGIRF encoding can be formulated as a linear least‐squares problem similar to Refs 10, 13, 36. Specifically, the MaxGIRF approach uses a multishot extension of Ref 10, as follows:
(11) |
Equation 11 often needs to be expressed in the form of to be solved with iterative algorithms (eg, LSQR 39 ). Such a form is obtained by taking the derivative of a cost function with respect to and setting it equal to zero, as follows:
(12) |
where denotes the linear forward operator that maps a length‐ vector of image values to a length‐ vector of ‐space samples of the th interleaf and th coil; and denotes its adjoint. The superscript denotes the transposed complex conjugate.
2.3. Low‐rank approximation to higher‐order encoding matrices
To reduce the computational burden of explicit matrix–vector multiplications and reduce memory requirements, we introduce a low‐rank approximation to higher‐order encoding matrices following the previous approaches. 40 , 41 Suppose the singular value decomposition (SVD) of the th higher‐order encoding matrix is given by
(13) |
where denotes the th left singular vector; is theth singular value; is the th right singular vector; and denotes the true rank of the higher‐order encoding matrix . A singular value and the corresponding right singular vector can be combined to yield . The vectors and are hereafter referred to as temporal and spatial basis vectors for the th higher‐order encoding matrix , respectively. Note that the relation in Eq. 13 is exact (no loss in accuracy), and is large (> 50) in general. According to the Eckart‐Young theorem, 42 the rank‐ SVD truncation provides the best rank‐ approximation to in a least‐squares sense, as follows:
(14) |
We select only one and apply it to all higher‐order encoding matrices. Substituting into Eq. 8 yields
(15) |
where and are diagonal matrices containing the elements of the vectors and (the complex conjugate of in the main diagonal, respectively. The last expression is obtained using the special property of the Hadamard product of a dense matrix with a rank‐1 matrix . Using Eq. 15, the forward and adjoint operators can be expressed as
(16a) |
(16b) |
Equation 16indicates that an expensive, explicit matrix–vector multiplication with an encoding matrix (and can be replaced by summations of a fast routine for , such as FFT followed by inverse gridding 43 or NUFFT. 44
2.4. Static off‐resonance map estimation
The MaxGIRF reconstruction requires an accurate and spatially smooth static off‐resonance map. For this purpose, we acquire a series of Cartesian gradient‐echo data sets at different TEs. Because the MaxGIRF encoding model does not separate water/fat components, we consider the image content as a sum of water/fat, and model static off‐resonance (in Hertz) as a sum of inhomogeneity and the water/fat chemical shift (eg, −3.8 ppm, −88 Hz at 0.55 T). We perform image‐based parameter estimation using nonlinear inversion optimization, inspired by a recent work on water/fat separation and inhomogeneity mapping. 45 , 46 Specifically, the forward signal model is defined as
(17) |
where is a length‐ vector of the estimated th TE image; denotes the number of TEs; is the th TE in seconds; and the symbol denotes the Hadamard product. Equation 17 is solved with the a slight modification of the iteratively regularized Gauss‐Newton method, as described by Tan et al. 45 The modified cost function is given as
(18) |
where is a length‐ vector of the concatenation of all noisy reconstructed echo images ; is the regularization parameter; and is a starting initial guess. A preconditioning matrix contains a Sobolev norm that enforces spatial smoothness on the static off‐resonance map as follows:
(19) |
where is an identity matrix; is a unitary 2D inverse Fourier transform matrix; is normalized Cartesian k‐space coordinates defined in ; and are constants set to 32 and 16, respectively. Equation 18 is solved with the iteratively regularized Gauss‐Newton method (see Appendix).
3. METHODS
3.1. Reconstruction and image processing
Cartesian and spiral‐image reconstructions and postprocessing were performed in MATLAB R2020b (MathWorks, Natick, MA) on a PC equipped with one 1.60‐GHz 4‐core Intel i5‐8250U CPU and 20 GB of RAM. A vendor proprietary raw data format was converted into the ISMRMRD format 47 and read in MATLAB. 48 For both Cartesian and spiral reconstructions, FFT was applied to transform from ‐space to image space. Coil sensitivity maps were estimated using the Walsh method 49 from the 32 × 32 Hanning‐windowed center of ‐space data (gridded ‐space data for spiral acquisitions). Neither intensity normalization nor gradient nonlinearity correction were applied. Spiral trajectories were generated with Ref 50. A sample density compensation function 51 was computed with Ref 52. The NUFFT code was downloaded from Ref 53. The MaxGIRF reconstructions were performed with the LSQR algorithm with maximum number of iterations = 15 and tolerance = 1e−5. For static off‐resonance map calculation, a coil sensitivity map from the first echo image was used to reconstruct coil‐combined images of the other echoes. A smooth static off‐resonance map was estimated by the iteratively regularized Gauss‐Newton (GN) method with 1e−6, 54 GN iterations = 35, maximum number of LSQR iterations = 250, and tolerance of LSQR = 1e−10.
3.2. Selection of an optimal rank
We chose an optimal that gives less than 2% error in normalized RMS error (NRMSE) between complex‐valued full‐rank and low‐rank reconstructions: . In vivo multislice spiral spin‐echo axial and slightly oblique sagittal data sets were used for evaluation. A randomized SVD algorithm as described in Supporting Information Text S2 was used to compute the SVD of a higher‐order encoding matrix. Singular values up to 50/80 (axial/sagittal) were calculated and considered as full rank. Image reconstructions were performed with a conjugate phase reconstruction (ie, the right side of Eq. 12).
3.3. Numerical simulation
To validate the proposed MaxGIRF approach, noiseless simulations on brain images with simulated eight‐channel coil sensitivity maps, 256 × 256 matrix, were performed. A sagittal slice was obtained from a 3D MIDA (multimodal imaging–based detailed anatomical) brain phantom,55 and coil sensitivity maps were obtained from Ref 56. The 116 tissue types of a MIDA phantom were categorized into 13 tissue labels used in a Brainweb phantom 57 by visual matching. The MR parameters () were obtained from a Brainweb phantom acquired at 1.5 T, and the dependence of relaxation parameters on the main magnetic field strength was ignored. A 20‐interleaf, variable‐density spiral acquisition (9.2‐ms readout) was simulated with = 24 mT/m, = 144 T/m/s, ADC dwell time = 2.5 μs, resolution = 0.9375 × 0.9375 mm2, and FOV decreasing from 240 × 240 mm2 to 180 × 180 mm2. The base spiral interleaf was similar to that used in 3D brain MR fingerprinting. 58 Direct matrix–vector multiplications using Eqs. 7 and 8 were used to generate noiseless ‐space data. System imperfections such as static off‐resonance and eddy currents were not simulated. The B0 dependence (0.55 T, 1.5 T, 3 T, and 7 T) and off‐isocenter dependence (z = 0, 50, 100, 150, and 200 mm) of concomitant fields were simulated. The MaxGIRF reconstructions were performed with a low‐rank approximation (=50/80) and NUFFT. The NRMSE between a Cartesian reference and spiral reconstructions was calculated. A time‐averaged concomitant field map for the first interleaf (in Hertz), , over the spiral readout duration () was calculated to demonstrate its relative magnitude compared with a static off‐resonance map 59 as follows:
(21) |
3.4. Imaging system
All imaging experiments were performed on a high‐performance 0.55T scanner (prototype MAGNETOM Aera; Siemens Healthcare, Erlangen, Germany) with gradients capable of 45 mT/m amplitude and 200 T/m/s slew rate. 34 , 35 A 16‐channel head/neck receive coil was used for phantom and in vivo experiments.
3.5. The GIRF measurements
The GIRF measurements were obtained using a set of triangular input functions and a spherical phantom as described by Campbell‐Washburn et al. 29 A body coil was used for both RF transmission and signal reception. The Brodsky method 25 was used to estimate both B0 cross‐terms and first‐order self‐term GIRFs as described by Robinson et al. 31 Only self‐term GIRFs were used in this study.
3.6. Phantom experiments
Spiral scans (axial and sagittal) of an ISMRM/NIST system phantom were acquired with a 2D gradient‐echo pulse sequence. An 8‐interleaf, uniform‐density, spiral‐out trajectory was designed to have 11.8‐ms readout duration. A target axial slice was imaged at isocenter and 75‐mm off‐isocenter in the z‐direction. A sagittal slice was imaged at isocenter. Imaging parameters were FOV = 224 × 224 mm2, resolution = 1.4 × 1.4 mm2, slice thickness = 8 mm, flip angle = 20°, TR = 100 ms, TE = 1 ms, and number of signal averages = 1. Ten repetitions were performed to reach steady state. For a static off‐resonance map, a single‐echo 2D Cartesian gradient‐echo sequence was repeated to acquire data sets at different TEs (2.5, 3.7, 4.7, 5.7, 6.7, and 7.7 ms).
3.7. Human experiments
All volunteers were scanned under a protocol approved by our local institutional review board (clinicaltrials.gov NCT03331380) and provided written informed consent. In vivo human brain scans (axial and sagittal) were acquired with a 2D interleaved multislice spiral spin‐echo pulse sequence. A slice‐rephasing gradient and the left crusher of a refocusing pulse were combined with a waveform reshaping technique 60 to minimize the concomitant‐field phase. Spoiler gradients were applied on all three axes at the end of a readout. Imaging parameters were FOV = 240 × 240 mm2, resolution = 0.75 × 0.75 mm2, slice thickness = 5 mm, slice gap = 15 mm, flip angle = 90°, TR = 745/500 (spiral/Cartesian) ms, TE = 15 ms, ADC dwell time = 2.5 μs, readout duration = 11.89 ms, number of readout samples = 4756, number of interleaves = 24, and number of signal averages = 14. For comparison, King's method was used for both axial and sagittal scans. Additionally, a modified King's method including static off‐resonance correction was performed for axial scans. Specifically, after correcting a time‐varying global frequency offset (through‐plane correction of concomitant field‐induced phase), frequency‐segmented deblurring was performed for in‐plane blurring correction, using an ordinary time parameter and a static off‐resonance map for Eqs. 26 and 30 in King et al, 7 respectively.
4. RESULTS
Figure 2 shows the NRMSEs between full‐rank and low‐rank reconstructions from in vivo multislice spiral spin‐echo axial and sagittal data sets. The NRMSEs are provided as a function of rank when only static off‐resonance is included (A,D), when only concomitant fields are included (B,E), and when both static off‐resonance and concomitant fields are included (C,F) in the higher‐order encoding matrices. For axial orientation, because the effect of concomitant fields is a time‐dependent receive frequency shift, its contribution to the rank is minimal (Figure 2B); thus, the static off‐resonance contributes mostly to the rank (Figure 2A). For nonaxial orientations, because the effect of concomitant fields is spatiotemporal blurring, a large rank is required compared with that in axial orientation. The rank of static off‐resonance is less than 8 like axial orientation and smaller than the rank of concomitant fields in absolute sense (Figure 2D vs 2E). The low‐rank (=8/50) reconstruction in Figure 2C gives almost perfect reconstruction for all axial slices, and the low‐rank (=30/80) reconstruction in Figure 2F gives < 2% error for all sagittal slices. The signal‐intensity attenuation is primarily in regions with high off‐resonance. The maximum deviation within the brain cortex of the difference between full‐rank and low‐rank (= 30) reconstructions is < 2% for all sagittal slices (only a slice at x = 50.0 mm is shown). The reconstruction time for the noniterative, conjugate phase‐based MaxGIRF (also iterative MaxGIRF) is linearly scaled by the rank (ie, number of singular values). The reconstruction times per singular value for axial and sagittal orientations were 5 s and 8 s, respectively. Thus, the reconstruction times (low‐rank/full‐rank) for axial and sagittal orientations were 40/250 s (8/50 rank) and 240/640 s (30/80 rank), respectively.
Figure 3 demonstrates noiseless numerical simulations of MaxGIRF reconstruction, using a low‐rank approximation ( = 50/80). The NRMSEs for MaxGIRF at x = 0 mm decreased gradually from 8.6% to 8.0% as the field strength increases. This small decrease in NRMSEs is attributed to weaker concomitant fields at higher field strengths and did not make any noticeable difference in image quality. This minimum error (8.6%) is primarily caused by the difference between Cartesian and spiral image reconstructions. Application of MaxGIRF reconstruction on off‐isocenter acquisitions achieved this minimum error, indicating perfect correction of the concomitant fields.
Figure 4 shows MaxGIRF reconstruction ( = 8) on axial spiral scans of an ISMRM/NIST phantom at 0.55 T. The blurring caused by the static off‐resonance and concomitant fields is successfully removed as compared with the conventional conjugate gradient–based iterative SENSE (CG‐SENSE) reconstruction. The inclusion of a static off‐resonance map in MaxGIRF reconstruction further improves the sharpness of features in regions with nonzero off‐resonance.
Figures 5 and 6 compare images reconstructed by MaxGIRF reconstruction ( = 8), King's method without static off‐resonance correction, and King's method with static off‐resonance correction for a slice at z = 17.5 mm and z = 105.0 mm, respectively, from multislice axial spiral spin‐echo imaging of a healthy volunteer at 0.55 T. For nonoblique axial spiral scans, the concomitant fields generate a time‐varying global frequency offset; thus. King's method removed most spatial blurring. King's method with static off‐resonance correction achieved further improvements in regions with slowly varying off‐resonance (Figure 6E), and the sharpness in such regions is comparable with MaxGIRF reconstruction. However, it achieved only minor improvements in regions with sharply varying static off‐resonance (Figure 5E). Because most noniterative off‐resonance methods 61 , 62 assume that the static off‐resonance map varies slowly in space, iterative MaxGIRF reconstruction achieved superior performance compared with King's method with static off‐resonance correction, in line with Makhijani and Nayak. 63 The MaxGIRF reconstruction time was 20 min per slice with a reconstruction matrix size of 320 × 320.
Figures 7 and 8 compare images reconstructed by NUFFT, King's method (without B0 correction), and MaxGIRF ( = 30) for a sagittal slice at x = 0.0 mm and z = 50.0 mm, respectively, from multislice spiral spin‐echo imaging of a healthy volunteer at 0.55 T. Because the spine region in Figure 7E is reconstructed without static off‐resonance, the improvements by MaxGIRF are solely attributed to the methodological difference between King's method and MaxGIRF. A green box in Figure 8 shows an exemplary region where King's method adversely increases blurring artifacts (compared with NUFFT) when concomitant fields counteract static off‐resonance. In contrast, MaxGIRF with static off‐resonance correction correctly handles such complex situations. The MaxGIRF reconstruction provides “sharper” delineation of brain tissue boundaries in Figure 8E compared with King's method, and its reconstruction time was 3 h per slice with a reconstruction matrix size of 640 × 640.
Figure 9 provides a further analysis on MaxGIRF reconstructions including (1) lowest‐order (L) versus full‐order (F) concomitant field compensation; and (2) iterative reconstruction versus noniterative conjugate phase reconstruction (CP). The difference between CP‐based MaxGIRF (F) and CP‐based MaxGIRF (L) was negligible; thus, compensating only lowest‐order terms is sufficient in this case. Given the system's gradient strength and field strength, it is not surprising that the higher‐order terms have a negligible effect. The difference between conjugate gradient–based MaxGIRF (L) and CP‐based MaxGIRF (L) shows primarily aliasing artifacts. The difference between CP‐based MaxGIRF (L) and King's method (King) (both noniterative methods) showed negligible structured artifacts that resemble the shape of concomitant fields at this slice, even in the areas with aliasing artifacts (eg, face). This indicates that both methods perform robustly under the influence of aliasing, and the methodological difference is manifested as the negligible structured artifacts. However, the CP‐based MaxGIRF (L) was only able to compensate strong concomitant fields (> 150 Hz; Figure 7H) near the spine (orange box), whereas King's method showed residual blurring. To further characterize the structured artifacts, noiseless spiral numerical simulations were performed at 0.55 T and 3 T using the same geometry as the human midsagittal scan but with a larger spiral FOV to remove any potential effects of aliasing on the performance of King's method (Supporting Information Figures S1 and S2). The difference image shows that structured artifacts are of identical shape (oval shape centered at isocenter), regardless of field strength (not shown) and distance from isocenter. This simulation indicates that King's method performs well within the boundary of the oval shape but gradually deteriorates beyond this boundary. The size of this oval shape is fixed and not a function of either imaging parameters nor spiral trajectories. The reconstruction times (axial/sagittal) for noniterative MaxGIRF methods and King's method were 40/240 s and 10/20 s, respectively.
5. DISCUSSION
We have demonstrated that the MaxGIRF higher‐order encoding matrix approach can be used to simultaneously correct concomitant fields and off‐resonance for spiral acquisitions at 0.55 T. This method uses GIRF‐based gradient waveform corrections to accurately calculate spatiotemporally varying concomitant field estimates and static off‐resonance maps to generate a hybrid signal equation with variables in the physical and logical coordinate system for image reconstruction. We characterized the accuracy of a low‐rank approximation of higher‐order encoding matrices to improve reconstruction times with NRMSEs, and implement a randomized SVD to mitigate memory requirements. The MaxGIRF approach provides improved sharpness in regions with large concomitant fields (including off‐isocenter) and/or nonzero static off‐resonance, compared with King's method. The effectiveness of the proposed method has been demonstrated with numerical simulations, phantom, and in vivo human spiral acquisitions.
Here, we applied MaxGIRF to spiral imaging using a lower field strength (0.55 T) MRI system. Concomitant field effects are increased at lower field strength, higher gradient amplitudes, longer readouts, and distance from isocenter. Therefore, this method is generalizable for several other MRI applications including systems with gradient inserts, permitting higher peak gradient amplitude, large FOV imaging, and all field strengths.
The phantom‐based GIRF measurements used by the MaxGIRF approach can be a viable alternative to NMR field probes when gradient nonlinearity is not too severe, gradient systems are approximately linear time‐invariant over the duration of a scan, and models of concomitant fields are well‐matched to real measurements. We presumed zero gradient nonlinearity but noticed image distortions both in Cartesian and spiral reconstructions (eg, sagittal slice of the NIST phantom). The concomitant fields derived without gradient nonlinearity may be sufficient for FOVs used in the current study, but a further investigation is required for large FOV spiral acquisitions (eg, cardiac, abdominal, or fetal imaging), especially in large‐bore MR systems or MR systems with a high‐performance gradient insert. 33 , 64 , 65 , 66 Because gradient nonlinearity along each gradient direction can be modeled by a product of spherical harmonics 67 , 68 and a linear gradient normalized by a reference gradient, 69 , 70 concomitant field terms incorporating the spherical harmonics expansion (possibly up to ninth order) 71 of gradient nonlinearity could be derived following the approach described in Testud et al. 17 Because gradient nonlinearity and a new set of concomitant fields under gradient nonlinearity are a function of linear gradients, both could be predicted by phantom‐based GIRFs with high accuracy and incorporated within the MaxGIRF framework.
An optimal rank criterion should depend on the specific MR application. In this study, we choose an optimal rank that gives less than 2% error in both magnitude and phase NRMSEs. This stringent requirement can be relaxed when signal intensity in regions with high off‐resonance (eg, fat regions) may not be of interest. In the case of water–fat‐separated imaging or when fat suppression is used, the static off‐resonance map may become smoother because the discrete water/fat chemical shift is removed. In this case, the optimal rank may be lower because singular values of smoother images decay more rapidly. 72
One notable advantage of the MaxGIRF approach is that it can be easily adapted to many clinical sites without NMR field probes. The MaxGIRF approach only requires good analytic models of concomitant fields and GIRFs measured with a simple pulse sequence and a spherical phantom. Because analytic expressions of concomitant fields for asymmetric gradient coils can be derived, 32 the MaxGIRF approach would be applicable to clinical systems with asymmetric gradient coils that have well‐documented analytic expressions. Pulse sequences for GIRF measurements can be developed and shared via a vendor‐independent pulse sequence framework (eg, Pulseq and TOPPE). 73 , 74 This would enable clinical sites without expertise in sequence programming to obtain GIRF measurements on their own scanners. Note that a pulse sequence for GIRF measurements described in Vannesjo et al 22 is provided by TOPPE. 75 Because of its simple reconstruction procedure, the MaxGIRF approach can be easily integrated into any existing gridding or NUFFT based non‐Cartesian reconstruction routines provided in open‐source reconstruction platforms such as BART, 76 Gadgetron, 77 and GPI. 78 Therefore, reconstruction software can potentially be shared among sites without difficulty.
This work has several limitations. We did not consider acquisitions in which an accumulated concomitant phase affects the net phase of spin isochromats after following excitation or refocusing pulses. This specifically includes balanced SSFP and fast spin‐echo sequences, each of which may require additional assumptions (eg, a perfect 180 refocusing pulse for fast spin echo) or additional pulse‐sequence modifications to formulate a tractable forward model that can be solved with an extension of the MaxGIRF framework.
Another drawback is reconstruction time. The SVD needs to be computed for each subject with a unique static off‐resonance map and whenever a slice prescription is changed. The SVD computation time was 1 min and 6 min for axial and sagittal scans, respectively, using a non‐parallelized implementation. However, this long computation time could be reduced by switching from a CPU‐based randomized SVD implementation (used in this study) to one implemented in parallel architectures such as GPUs. The other computation bottleneck is repetitions of NUFFTs. Because the current MATLAB implementation does not use parallel computing via multicore CPUs, MaxGIRF reconstruction is relatively slow ( times longer than conjugate gradient–based SENSE). This limitation could be partially overcome with simultaneous computations of NUFFTs using multiple GPUs. This may be particularly beneficial for 3D spiral and/or very high resolution spiral scans.
6. CONCLUSIONS
We demonstrate a higher‐order image reconstruction method, called MaxGIRF, that incorporates concomitant fields and GIRF‐based gradient waveform prediction for spoiled gradient‐echo and spin‐echo spiral imaging. Simulations indicate that MaxGIRF successfully mitigates local blurring caused by concomitant fields at various field strengths and distances from isocenter. The MaxGIRF reconstruction was able to mitigate concomitant fields both in phantom and in vivo brain spiral imaging at 0.55 T, superior to the most notable existing solution. Including an accurate static off‐resonance map further improves its performance in regions with large static off‐resonance. The impact of this method is greatest when imaging with longer readouts, high gradient amplitudes, and/or at lower field strength.
Supporting information
ACKNOWLEDGMENTS
The authors acknowledge the assistance of Siemens Healthcare in the modification of the MRI system for operation at 0.55 T under an existing cooperative research agreement between NHLBI and Siemens Healthcare.
APPENDIX A.
The nonlinear signal model is first linearized with the Taylor expansion around the current estimate as follows:
(A1) |
where is the Fréchet derivative of evaluated at . Substituting with in Eq. 18 leads to the cost function that provides the update for the th Gauss‐Newton iteration as follows:
(A2) |
Equation A2 can be simplified to
(A3) |
Because , Eq. A3 can be expressed in terms of and solved with LSQR as follows:
(A4) |
The regularization parameter is set to decrease per iteration as , where , until it reaches a minimum regularization parameter . The data vector is scaled to have “100.0 L2 norm,” 79 and scaling of unknowns is not used. The derivative operator is defined as
(A5) |
Using Eq. A5, the matrix–vector product is calculated as
(A6) |
where we define . Similarly, the matrix–vector product involving the adjoint of the derivative operator can be calculated as
(A7) |
where denotes the real operator that keeps only the real part of a complex‐valued input.
Lee NG, Ramasawmy R, Lim Y, Campbell‐Washburn AE, Nayak KS. MaxGIRF: Image reconstruction incorporating concomitant field and gradient impulse response function effects. Magn Reson Med. 2022;88:691‐710. doi: 10.1002/mrm.29232
A preliminary version of this work was presented at ISMRM 2021, Abstract #624. A.C.W. and K.S.N. contributed equally to this work.
Funding information National Science Foundation, Grant/Award Number: 1828736; NHLBI DIR, Grant/Award Number: Z01‐HL006257; National Institutes of Health, Grant/Award Number: R01‐HL130494
Click here for author‐reader discussions
DATA AVAILABILITY STATEMENT
The code and sample data (ISMRMRD format) that support the findings of this study are openly available in GitHub at https://www.github.com/usc‐mrel/lowfield_maxgirf and https://www.github.com/usc‐mrel/nlinv_estimation.
REFERENCES
- 1. Li Z, Hu HH, Miller JH, et al. A spiral spin‐echo MR imaging technique for improved flow artifact suppression in T1‐weighted postcontrast brain imaging: a comparison with Cartesian turbo spin‐echo. Am J Neuroradiol. 2016;37:642‐647. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2. Ooi MB, Li Z, Robison RK, et al. Spiral T1 spin‐echo for routine postcontrast brain MRI exams: a multicenter multireader clinical evaluation. Am J Neuroradiol. 2020;41:238‐245. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3. Ma D, Gulani V, Seiberlich N, et al. Magnetic resonance fingerprinting. Nature. 2013;495:187‐192. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Jiang Y, Ma D, Seiberlich N, Gulani V, Griswold MA. MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout. Magn Reson Med. 2015;74:1621‐1631. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5. Nayak KS, Hargreaves BA, Hu BS, Nishimura DG, Pauly JM, Meyer CH. Spiral balanced steady‐state free precession cardiac imaging. Magn Reson Med. 2005;1473:1468‐1473. [DOI] [PubMed] [Google Scholar]
- 6. Bernstein MA, Zhou XJ, Polzin JA, et al. Concomitant gradient terms in phase contrast MR: analysis and correction. Magn Reson Med. 1998;39:300‐308. [DOI] [PubMed] [Google Scholar]
- 7. King KF, Ganin A, Zhou XJ, Bernstein MA. Concomitant gradient field effects in spiral scans. Magn Reson Med. 1999;41:103‐112. [DOI] [PubMed] [Google Scholar]
- 8. Chen W, Sica CT, Meyer CH. Fast conjugate phase image reconstruction based on a Chebyshev approximation to correct for B0 field inhomogeneity and concomitant gradients. Magn Reson Med. 2008;60:1104‐1111. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9. Cheng JY, Santos JM, Pauly JM. Fast concomitant gradient field and field inhomogeneity correction for spiral cardiac imaging. Magn Reson Med. 2011;66:390‐401. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10. Wilm BJ, Barmet C, Pavan M, Pruessmann KP. Higher order reconstruction for MRI in the presence of spatiotemporal field perturbations. Magn Reson Med. 2011;65:1690‐1701. [DOI] [PubMed] [Google Scholar]
- 11. de Zanche N, Barmet C, Nordmeyer‐Massner JA, Pruessmann KP. NMR probes for measuring magnetic fields and field dynamics in MR systems. Magn Reson Med. 2008;60:176‐186. [DOI] [PubMed] [Google Scholar]
- 12. Barmet C, de Zanche N, Pruessmann KP. Spatiotemporal magnetic field monitoring for MR. Magn Reson Med. 2008;60:187‐197. [DOI] [PubMed] [Google Scholar]
- 13. Wilm BJ, Barmet C, Gross S, et al. Single‐shot spiral imaging enabled by an expanded encoding model: demonstration in diffusion MRI. Magn Reson Med. 2017;91:83‐91. [DOI] [PubMed] [Google Scholar]
- 14. Engel M, Kasper L, Barmet C, et al. Single‐shot spiral imaging at 7 T. Magn Reson Med. 2018;80:1836‐1846. [DOI] [PubMed] [Google Scholar]
- 15. Dietrich BE, Brunner DO, Wilm BJ, et al. A field camera for MR sequence monitoring and system analysis. Magn Reson Med. 2016;75:1831‐1840. [DOI] [PubMed] [Google Scholar]
- 16. Barmet C, De Zanche N, Wilm BJ, Pruessmann KP. A transmit/receive system for magnetic field monitoring of in vivo MRI. Magn Reson Med. 2009;62:269‐276. [DOI] [PubMed] [Google Scholar]
- 17. Testud F, Gallichan D, Layton KJ, et al. Single‐shot imaging with higher‐dimensional encoding using magnetic field monitoring and concomitant field correction. Magn Reson Med. 2015;73:1340‐1357. [DOI] [PubMed] [Google Scholar]
- 18. Sipilä P, Lange D, Lechner S, et al. Robust susceptibility‐matched NMR probes for compensation of gradient field imperfections in magnetic resonance imaging. Sens Actuators A Physical. 2008;145‐146:139‐146. [Google Scholar]
- 19. Sipilä P, Greding S, Wachutka G, Wiesinger F. 2H transmit‐receive NMR probes for magnetic field monitoring in MRI. Magn Reson Med. 2011;65:1498‐1506. [DOI] [PubMed] [Google Scholar]
- 20. Liu H, Matson GB. Accurate measurement of magnetic resonance imaging gradient characteristics. Materials (Basel). 2014;7:1‐15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21. Addy NO, Wu HH, Nishimura DG. Simple method for MR gradient system characterization and k‐space trajectory estimation. Magn Reson Med. 2012;68:120‐129. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22. Vannesjo SJ, Haeberlin M, Kasper L, et al. Gradient system characterization by impulse response measurements with a dynamic field camera. Magn Reson Med. 2013;69:583‐593. [DOI] [PubMed] [Google Scholar]
- 23. Vannesjo SJ, Graedel NN, Kasper L, et al. Image reconstruction using a gradient impulse response model for trajectory prediction. Magn Reson Med. 2016;76:45‐58. [DOI] [PubMed] [Google Scholar]
- 24. Duyn JH, Yang Y, Frank JA, Van Der Veen JW. Simple correction method for k‐space trajectory deviations in MRI. J Magn Reson. 1998;132:150‐153. [DOI] [PubMed] [Google Scholar]
- 25. Brodsky EK, Klaers JL, Samsonov AA, Kijowski R, Block WF. Rapid measurement and correction of phase errors from B0 eddy currents: impact on image quality for non‐cartesian imaging. Magn Reson Med. 2013;69:509‐515. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26. Malik SJ, Hajnal JV. Phase relaxed localized excitation pulses for inner volume fast spin echo imaging. Magn Reson Med. 2016;3:848‐861. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27. Abo Seada S, Price AN, Schneider T, Hajnal JV, Malik SJ. Multiband RF pulse design for realistic gradient performance. Magn Reson Med. 2019;81:362‐376. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28. Bruijnen T, Stemkens B, van den Berg CAT, Tijssen RHN. Prospective GIRF‐based RF phase cycling to reduce eddy current‐induced steady‐state disruption in bSSFP imaging. Magn Reson Med. 2020;84:115‐127. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29. Campbell‐Washburn AE, Xue H, Lederman RJ, Faranesh AZ, Hansen MS. Real‐time distortion correction of spiral and echo planar images using the gradient system impulse response function. Magn Reson Med. 2016;75:2278‐2285. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30. Stich M, Wech T, Slawig A, et al. Gradient waveform pre‐emphasis based on the gradient system transfer function. Magn Reson Med. 2018;80:1521‐1532. [DOI] [PubMed] [Google Scholar]
- 31. Robison RK, Li Z, Wang D, Ooi MB, Pipe JG. Correction of B0 eddy current effects in spiral MRI. Magn Reson Med. 2019;81:2501‐2513. [DOI] [PubMed] [Google Scholar]
- 32. Meier C, Zwanger M, Feiweier T, Porter D. Concomitant field terms for asymmetric gradient coils: consequences for diffusion, flow, and echo‐planar imaging. Magn Reson Med. 2008;60:128‐134. [DOI] [PubMed] [Google Scholar]
- 33. Wilm BJ, Hennel F, Roesler MB, Weiger M, Pruessmann KP. Minimizing the echo time in diffusion imaging using spiral readouts and a head gradient system. Magn Reson Med. 2020;84:3117‐3127. [DOI] [PubMed] [Google Scholar]
- 34. Campbell‐Washburn AE, Ramasawmy R, Restivo MC, et al. Opportunities in interventional and diagnostic imaging by using high‐performance low‐field‐strength MRI. Radiology. 2019;293:384‐393. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35. Restivo MC, Ramasawmy R, Bandettini WP, Herzka DA, Campbell‐Washburn AE. Efficient spiral in‐out and EPI balanced steady‐state free precession cine imaging using a high‐performance 0.55T MRI. Magn Reson Med. 2020;84:2364‐2375. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36. Schultz G, Ullmann P, Lehr H, Welz AM, Hennig J, Zaitsev M. Reconstruction of MRI data encoded with arbitrarily shaped, curvilinear, nonbijective magnetic fields. Magn Reson Med. 2010;64:1390‐1403. [DOI] [PubMed] [Google Scholar]
- 37. Jung Y, Jashnani Y, Kijowski R, Block WF. Consistent non‐Cartesian off‐axis MRI quality: calibrating and removing multiple sources of demodulation phase errors. Magn Reson Med. 2007;57:206‐211. [DOI] [PubMed] [Google Scholar]
- 38. Tao S, Trzasko JD, Shu Y, Huston J, Bernstein MA. Integrated image reconstruction and gradient nonlinearity correction. Magn Reson Med. 2015;74:1019‐1031. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39. Paige CC, Saunders MA. LSQR: an algorithm for sparse linear equations and sparse least squares. ACM Trans Math Softw. 1982;8:43‐71. [Google Scholar]
- 40. Wilm BJ, Barmet C, Pruessmann KP. Fast higher‐order MR image reconstruction using singular‐vector separation. IEEE Trans Med Imaging. 2012;31:1396‐1403. [DOI] [PubMed] [Google Scholar]
- 41. Fessler JA, Lee S, Olafsson VT, Shi HR, Noll DC. Toeplitz‐based iterative image reconstruction for MRI with correction for magnetic field inhomogeneity. IEEE Trans Signal Process. 2005;53:3393‐3402. [Google Scholar]
- 42. Eckart C, Young G. The approximation of one matrix by another of lower rank. Psychometrika. 1936;1:211‐218. [Google Scholar]
- 43. Rasche V, Proksa R, Sinkus R, Börnert P, Eggers H. Resampling of data between arbitrary grids using convolution interpolation. IEEE Trans Med Imaging. 1999;18:385‐392. [DOI] [PubMed] [Google Scholar]
- 44. Fessler JA, Sutton BP. Nonuniform fast Fourier transforms using min‐max interpolation. IEEE Trans Signal Process. 2003;51:560‐574. [Google Scholar]
- 45. Tan Z, Voit D, Kollmeier JM, Uecker M, Frahm J. Dynamic water/fat separation and B0 inhomogeneity mapping—joint estimation using undersampled triple‐echo multi‐spoke radial FLASH. Magn Reson Med. 2019;82:1000‐1011. [DOI] [PubMed] [Google Scholar]
- 46. Uecker M, Hohage T, Block KT, Frahm J. Image reconstruction by regularized nonlinear inversion‐joint estimation of coil sensitivities and image content. Magn Reson Med. 2008;60:674‐682. [DOI] [PubMed] [Google Scholar]
- 47. https://github.com/ismrmrd/siemens_to_ismrmrd. Published October 23, 2015. Updated September 17, 2015. Accessed May 18, 2020.
- 48. https://github.com/ismrmrd/ismrmrd. Published October 23, 2015. Updated September 17, 2015. Accessed May 18, 2020.
- 49. Walsh DO, Gmitro AF, Marcellin MW. Adaptive reconstruction of phased array MR imagery. Magn Reson Med. 2000;43:682‐690. [DOI] [PubMed] [Google Scholar]
- 50. http://www‐mrsrl.stanford.edu/#brian/vdspiral. Published November 17, 2005. Updated November 17, 2005. Accessed May 18, 2020.
- 51. Zwart NR, Johnson KO, Pipe JG. Efficient sample density estimation by combining gridding and an optimized kernel. Magn Reson Med. 2012;67:701‐710. [DOI] [PubMed] [Google Scholar]
- 52. https://github.com/ISMRM/mri_unbound. Published November 9, 2016. Updated November 9, 2016. Accessed May 18, 2020.
- 53. https://github.com/JeffFessler/mirt. Published February 20, 2020. Updated February 20, 2020. Accessed May 18, 2020.
- 54. Wang X, Kohler F, Unterberg‐Buchwald C, Lotz J, Frahm J, Uecker M. Model‐based myocardial T1 mapping with sparsity constraints using single‐shot inversion‐recovery radial FLASH cardiovascular magnetic resonance. J Cardiovasc Magn Reson. 2019;21:1‐11. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55. Iacono MI, Neufeld E, Akinnagbe E, et al. MIDA: a multimodal imaging‐based detailed anatomical model of the human head and neck. PLoS One. 2015;10:e0124126. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56. https://github.com/hansenms/ismrm_sunrise_matlab. Published November 14, 2012. Updated February, 12 2014. Accessed May 18, 2020.
- 57. Collins DL, Zijdenbos AP, Kollokian V, et al. Design and construction of a realistic digital brain phantom. IEEE Trans Med Imaging. 1998;17:463‐468. [DOI] [PubMed] [Google Scholar]
- 58. Cao X, Ye H, Liao C, Li Q, He H, Zhong J. Fast 3D brain MR fingerprinting based on multi‐axis spiral projection trajectory. Magn Reson Med. 2019;82:289‐301. [DOI] [PubMed] [Google Scholar]
- 59. Wang Y, van Gelderen P, de Zwart JA, Campbell‐Washburn AE, Duyn JH. FMRI based on transition‐band balanced SSFP in comparison with EPI on a high‐performance 0.55 T scanner. Magn Reson Med. 2021;85:3196‐3210. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60. Zhou XJ, Tan SG, Bernstein MA. Artifacts induced by concomitant magnetic field in fast spin‐echo imaging. Magn Reson Med. 1998;40:582‐591. [DOI] [PubMed] [Google Scholar]
- 61. Noll DC, Meyer CH, Pauly JM, Nishimura DG, Macovski A. A homogeneity correction method for magnetic resonance imaging with time‐Vaiying gradients. IEEE Trans Med Imaging. 1991;10:629‐637. [DOI] [PubMed] [Google Scholar]
- 62. Ahunbay E, Pipe JG. Rapid method for deblurring spiral MR images. Magn Reson Med. 2000;44:491‐494. [DOI] [PubMed] [Google Scholar]
- 63. Makhijani MK, Nayak KS. Exact correction of sharply varying off‐resonance effects in spiral MRI. In: Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro‐Proceedings, Arlington, Virginia, 2006. pp 730–733.
- 64. Weiger M, Overweg J, Rösler MB, et al. A high‐performance gradient insert for rapid and short‐T2 imaging at full duty cycle. Magn Reson Med. 2018;79:3256‐3266. [DOI] [PubMed] [Google Scholar]
- 65. Foo TKF, Laskaris E, Vermilyea M, et al. Lightweight, compact, and high‐performance 3T MR system for imaging the brain and extremities. Magn Reson Med. 2018;80:2232‐2245. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 66. Hennel F, Wilm B, Roesler MB, Weiger M, Dietrich B, Pruessmann KP. Echo‐planar imaging of the human head with 100 mT/m gradients and high‐order modeling of eddy current fields. Magn Reson Med. 2020;84:751‐761. [DOI] [PubMed] [Google Scholar]
- 67. Roméo F, Hoult DI. Magnet field profiling: analysis and correcting coil design. Magn Reson Med. 1984;1:44‐65. [DOI] [PubMed] [Google Scholar]
- 68. Janke A, Zhao H, Cowin GJ, Galloway GJ, Doddrell DM. Use of spherical harmonic deconvolution methods to compensate for nonlinear gradient effects on MRI images. Magn Reson Med. 2004;52:115‐122. [DOI] [PubMed] [Google Scholar]
- 69. Bammer R, Markl M, Barnett A, et al. Analysis and generalized correction of the effect of spatial gradient field distortions in diffusion‐weighted imaging. Magn Reson Med. 2003;50:560‐569. [DOI] [PubMed] [Google Scholar]
- 70. Markl M, Bammer R, Alley MT, et al. Generalized reconstruction of phase contrast MRI: analysis and correction of the effect of gradient field distortions. Magn Reson Med. 2003;50:791‐801. [DOI] [PubMed] [Google Scholar]
- 71. Weavers PT, Tao S, Trzasko JD, et al. Image‐based gradient non‐linearity characterization to determine higher‐order spherical harmonic coefficients for improved spatial position accuracy in magnetic resonance imaging. Magn Reson Imaging. 2017;38:54‐62. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 72. Sadek RA. SVD based image processing applications: state of the art, contributions and research challenges. Int J Adv Comput Sci Appl. 2012;3:26‐34. [Google Scholar]
- 73. Layton KJ, Kroboth S, Jia F, et al. Pulseq: a rapid and hardware‐independent pulse sequence prototyping framework. Magn Reson Med. 2017;1552:1544‐1552. [DOI] [PubMed] [Google Scholar]
- 74. Nielsen J, Noll DC. TOPPE: a framework for rapid prototyping of MR pulse sequences. Magn Reson Med. 2018;3134:3128‐3134. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 75. https://github.com/toppeMRI/old_matlab/tree/oldOct2018/examples/v2/girf. Published September 19, 2017. Updated September 19, 2017. Accessed May 18, 2020.
- 76. Generalized Magnetic Resonance Image Reconstruction using The Berkeley Advanced Reconstruction Toolbox. 2015;2486:9660006.
- 77. Hansen MS, Sørensen TS. Gadgetron: an open source framework for medical image reconstruction. Magn Reson Med. 2013;69:1768‐1776. [DOI] [PubMed] [Google Scholar]
- 78. Zwart NR, Pipe JG. Graphical programming interface: a development environment for MRI methods. Magn Reson Med. 2015;74:1449‐1460. [DOI] [PubMed] [Google Scholar]
- 79. Uecker M, Zhang S, Frahm J. Nonlinear inverse reconstruction for real‐time MRI of the human heart using undersampled radial FLASH. Magn Reson Med. 2010;63:1456‐1462. [DOI] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Data Availability Statement
The code and sample data (ISMRMRD format) that support the findings of this study are openly available in GitHub at https://www.github.com/usc‐mrel/lowfield_maxgirf and https://www.github.com/usc‐mrel/nlinv_estimation.