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. 2022 Jul 7;7(7):1224–1226. doi: 10.1080/23802359.2022.2090298

The complete chloroplast genome of Mediterranean shrub Teucrium fruticans L. (Lamiaceae; Subfam. Lamioideae)

Shoufu Gong 1,✉
PMCID: PMC9275486  PMID: 35837491

Abstract

Teucrium fruticans L. is a shrub in Lamiaceae that is native to Mediterranean countries where it is used in medicine ornamental gardens. Here, we report the complete chloroplast genome of T. fruticans which is 150,808 bp in length, with a pair of inverted repeat regions (IRs) (25,597 bp) separated by a large single-copy area (LSC) (82,634 bp) and a small single-copy area (SSC) (16,912 bp). The completed chloroplast genome of T. fruticans comprises 130 unique genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The results of the phylogenetic analysis significantly supported the grouping of T. fruticans with nine Teucrium species. The complete chloroplast genome of T. fruticans can provide a powerful tool to accelerate breeding, biotechnological and phylogenetic study.

Keywords: Teucrium fruticans, chloroplast genome, Mediterranean region, ornamental plants

The genus Teucrium consists of approximately 250 species; most of which have ornamental and medicinal uses, including Teucrium fruticans L. (1753) (Lopez et al. 2006; Frabetti et al. 2009; Salmaki et al. 2016; Gagliano Candela et al. 2021). Owing to its brilliant blue flowers and evergreen foliage with contrasting colors, it is widely planted in ornamental gardens (Acquaviva et al. 2018; Khan et al. 2019). Additionally, this species is used in the traditional folk medicine of Central Italy as a depurative and diuretic (Gagliano Candela et al. 2021). Other studies illustrate that this species contains abundant functional metabolites, such as flavonoids, fatty acid esters, and essential oils (Fontana et al. 1999; Flamini et al. 2001; Kisiel et al. 2014). In the present study, we assembled and annotated the complete cp genome of T. fruticans, and analyzed its sequence in a phylogenetic context with other publicly available cp genomes. This is an essential genomic resource for future molecular studies of this species as well as the evolutionary history of Lamiaceae.

Fresh leaves of T. fruticans were collected from Xinyang Agriculture and Forestry University (Xinyang, China; 114°13′E, 32°17′N) and frozen in liquid nitrogen before DNA extraction. Voucher specimens were deposited in the herbarium of Xinyang Agriculture and Forestry University (Mr. Gong, 2000230016@xyafu.edu.cn) under the voucher code XTF22003. Total genomic DNA was extracted using the modified CTAB method (Doyle and Doyle 1987). The TruSeq™ DNA sample Prep Kit was used to construct a ∼500 bp library that was sequenced on an Illumina NovaSeq6000 platform for 250 cycles paired end. Raw reads were edited through in-house Perl scripts by removing reads containing adapter or poly-N and low-quality reads, and then clean reads were de novo assembled by NOVOPlasty (Dierckxsens et al. 2017). The assembled chloroplast genome of T. fruticans was annotated using PGA (Qu et al. 2019) and GeSeq (Tillich et al. 2017). For each gene, start and stop codons, and boundaries between introns and exons were manually corrected. The annotated cp genome was submitted to GenBank (OL960707) and the raw sequencing data were deposited in SRA (SRA no. PRJNA775852).

The length of the complete chloroplast genome of T. fruticans was 150,808 bp with a total GC content of 38.0%. The complete chloroplast genome of T. fruticans had a typical quadripartite construction, which contains two inverted repeat regions (IRa and IRb) of 25,597 bp that was segregated by a large single-copy (LSC, 82,634 bp) and a small single-copy (SSC 16,912 bp). The GC content for the LSC and SSC was 35.76% and 31.60%, respectively. The complete chloroplast genome of T. fruticans comprised 130 unique genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Introns are present in 23 of the annotated genes.

To confirm the phylogenetic position of T. fruticans, the complete chloroplast genomes of 32 Lamiaceae plant species (including nine Teucrium species) were downloaded from the NCBI GenBank database. The sequences were aligned using the MAFFT version 7.429 software (Katoh and Standley 2013), and then the maximum-likelihood (ML) tree (Figure 1) was constructed using IQ-TREE with 1000 bootstrap replicates (Nguyen et al. 2015). In the phylogenetic reconstruction, T. fruticans formed a clade with the other Teucrium species in which it is the earliest branching lineage (Figure 1). This T. fruticans chloroplast genome will provide vital genomic data for future studies of horticultural development, population genetics, and evolution in Lamiaceae.

Figure 1.

Figure 1.

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The maximum-likelihood phylogenetic tree showed the relationship between T. fruticans and other 31species within the Lamiaceae family, using complete chloroplast genomes. The numbers above the lines represent ML bootstrap values. The scale bar indicates evolutionary distance in substitutions per site.

Funding Statement

This work was supported by the Science and Technology Innovation Team of Xinyang Agriculture and Forestry University [CXTD202002, CXTD2021] and the Experimental Teaching Demonstration Center of Xinyang Agriculture and Forestry University [202102].

Author contributions

Shoufu Gong directed the study and designed the experiments. Shoufu Gong performed the data processing. Shoufu Gong drafted the manuscript. All authors approved the final draft.

Ethics statement

The author has read the manuscript and has approved this submission. The ethical statement is not applicable.

Disclosure statement

The author reports no conflict of interest. The author alone is responsible for the content and writing of the article.

Data availability statement

The contact person for the specimen is Shoufu Gong (2000230016@xyafu.edu.cn). The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/ under the accession no. OL960707. The associated BioProject, SRA, and Bio-Sample numbers are PRJNA775852, SRX12809278, and SAMN22630214, respectively.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

The contact person for the specimen is Shoufu Gong (2000230016@xyafu.edu.cn). The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov/ under the accession no. OL960707. The associated BioProject, SRA, and Bio-Sample numbers are PRJNA775852, SRX12809278, and SAMN22630214, respectively.

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