Table 3.
Protein synthesis core genes of Tü 2108 identified with ARTS. Following criteria are listed: gene duplication, phylogenetic gene difference, occurrence of core genes in a biosynthetic gene cluster (BCG). +: criterion fulfilled, –: criterion not fulfilled. For BGC prediction, only region 6_3 (berninamycin BGC) is listed
| Gene | Description | Duplication | Phylogeny | BGC | Accession ID |
|---|---|---|---|---|---|
| rpsR | 30S ribosomal protein S18 | + | + | + | TIGR00165 |
| yciO | tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family | + | + | + | TIGR00057 |
| rpmF | 50S ribosomal protein L32 | + | + | + | TIGR01031 |
| rpmE | 50S ribosomal protein L31 | + | + | + | TIGR00105 |
| tufA/B | elongation factor Tu | + | + | 6_3 | TIGR00485 |
| rpmB | 50S ribosomal protein L28 | + | - | + | TIGR00009 |
| rpmG | 50S ribosomal protein L33 | + | - | + | TIGR01023 |
| rpsD | 50S ribosomal protein L4 | - | - | 6_3 | TIGR03953 |
| rpsL | 30S ribosomal protein S12 | - | - | 6_3 | TIGR00981 |
| rpsJ | 30S ribosomal protein S10 | - | - | 6_3 | TIGR01049 |
| rpsO | 30S ribosomal protein S15 | - | - | + | TIGR00952 |
| rpsG | 30S ribosomal protein uS7 | - | - | 6_3 | TIGR01029 |
| fusA | elongation factor G | - | - | 6_3 | TIGR00484 |
| rrsS | tryptophan-tRNA ligase | + | + | - | TIGR00233 |
| rsgA | ribosome small subunit-dependent GTPase A | + | - | - | TIGR00157 |