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. 2022 Oct 11;55(10):1856–1871.e6. doi: 10.1016/j.immuni.2022.07.020
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Hamster monoclonal anti-mouse CD95 PE-Cy7 (clone: Jo2) BD Biosciences CAT#:557653
Rat monoclonal anti-mouse CD38 A700 (clone: 90) Invitrogen CAT#:56-0381-82
Mouse monoclonal anti-mouse CD45.2 PE (clone: 104) Biolegend CAT#:109808
Mouse monoclonal anti-mouse CD45.1 PerCP Cy5.5 (clone: A20) Biolegend CAT#:110728
Mouse monoclonal anti-mouse B220 A488 or BV421 (clone: RA3-6B2) BD Biosciences CAT#:557669, 562922
Rat monoclonal anti-mouse CD138 BV650 (clone:281-2) BD Biosciences CAT#:564068
Rat monoclonal anti-mouse IgD APC-Cy7 Biolegend CAT#:405716
Rat monoclonal anti-mouse-CD16/32 purified (clone 2.4G2) BD Biosciences CAT#:553142
Rat monoclonal anti-mouse CD4 APC-eF780 (clone: RM4-5) Invitrogen CAT#:47-0042-80
Rat monoclonal anti-mouse CD8 APC-eF780 (clone: 53-6.7) Invitrogen CAT#:47-0081-80
Rat monoclonal anti-mouse F4/80 APC-eF780 (clone: BM8) Invitrogen CAT#:47-4801-80
Rat monoclonal anti-mouse Ly-6G APC-eF780 (clone: RB6-8C5) Invitrogen CAT#:47-5931-80
Monoclonal BG18_iGL0 Produced in house N/A
Monoclonal BG18_Pre5 Produced in house N/A
Monoclonal BG18_Pre14 Produced in house N/A
Monoclonal muBG18_d42.10 Steichen et al., 2019 N/A
Monoclonal PGT128 Walker et al., 2011 AB_2491047
Monoclonal VRC01 Wu et al., 2010 AB_2491019
Monoclonal PGT145 Walker et al., 2011 AB_2491054
Monoclonal RM19R Cottrell et al., 2020 N/A
Rabbit polyclonal anti-His GeneScript CAT#A00174
Human monoclonal CR3022 SARS-CoV-2 Spike Glycoprotein S1 Abcam CAT#:ab273073
Alkaline Phosphatase AffiniPure Goat Anti-mouse IgG Jackson Immuno Research CAT#:115-055-071
Alkaline Phosphatase AffiniPure Goat Anti-human IgG Jackson Immuno Research CAT#:109-055-098

Biological samples

Human plasma samples A (1988), B (1989) and C(1992) from Bangaru et al., 2022; Sample D from study PMID: 32540903 Bangaru et al., 2022; ongoing study N/A
Immunized rhesus macaque serum Novavax N/A

Chemicals, peptides, and recombinant proteins

Streptavidin-A488 Biolegend CAT#:405235
Streptavidin-PE Biolegend CAT#:405204
Streptavidin-A647 Biolegend CAT#:405237
Streptavidin-BV421 Biolegend CAT#:405226
LIVE/DEAD™ Fixable Blue Dead Cell Stain Kit, for UV excitation Thermo Fisher Scientific CAT#: L34962
Sigma Adjuvant Sigma CAT#:S6322
Alhydrogel adjvant 2% Invivogen CAT#:Vac-alu-250
Papain Sigma Aldrich CAT #: P3125-100mg
N332-GT2 ferritin nanoparticle Steichen et al., 2019 N/A
N332-GT2 trimer Steichen et al., 2019 N/A
eOD-GT8 60mer immunogen Jardine et al., 2015 N/A
SARS-CoV-1 RBD monomers Produced in house N/A
SARS-CoV-2 Spike Proteins Produced in house N/A
SIGMAFAST p-Nitrophenyl phosphate Tablets Sigma CAT#: N2770-50SET
Gentle Ag/Ab binding buffer Pierce CAT#:21012
Gentle Ag/Ab elution buffer Pierce CAT#:21013
ACK lysing buffer Lonza CAT#:10-548E
Monomeric and trimeric SARS-CoV-2 and SARS-CoV receptor binding domains This paper N/A
TALON Metal Affinity Resin Takara CAT#635652
ExpiFectamine 293 Transfection Kit Thermo Fisher Cat#A14525

Critical commercial assays

Pan B Cell Isolation Kit II, mouse Miltenyi Biotec CAT#:130-104-443
UltraComp eBeads™ Compensation Beads Thermo Fisher Scientific CAT#:01-2222-42
Protein G chromatography cartridges, 5ml Pierce CAT#:89927
PD-10 desalting columns GE Life Sciences CAT#:17085101

Deposited data

SARS-CoV-2 spike protein complexed with polyclonal Fab
Human donor A
Human donor B
Human donor C
Human donor D
This paper EMDB: EMD-27200
EMDB: EMD-27199
EMDB: EMD-27198
EMDB: EMD-27197
S protein mix + NVX-vaccinated NHPs
36057
36964
37452
37611
This paper EMDB: EMD-27039
EMDB: EMD-27040
EMDB: EMD-27041
EMDB: EMD-27042
N332-GT2 + Mouse Fab
BG18, d14
WT, d42
BG18, d42
This paper EMDB: EMD-27036
EMDB: EMD-27037
EMDB: EMD-27038
BCR sequences for CR3022Gl This paper GenBank: OP079065– OP079171; GenBank: OP079441–OP079547
BCR sequences for CR3022Ma This paper GenBank: OP079172–OP079380; GenBank: OP079548–OP079756
BCR sequences for CC12.1 This paper GenBank: OP079381–OP079440; GenBank: OP079757–OP079826

Experimental models: Cell lines

HEK-293T-F Thermo Fisher Scientific Cat#: R79007
Human: Expi293F Thermo Fisher Cat#A14527; RRID: CVCL_D615

Experimental models: Organisms/strains

Mouse: B6.SJL-Ptprcapepcb/BoyJ The Jackson Laboratory JAX:002014
Mouse: C57BL/6J The Jackson Laboratory JAX:000664
Mouse : BG18gH Lin et al., 2018 N/A
Mouse : BG18gH-GFP This paper N/A
Mouse : MD4 The Jackson Laboratory; Mason et al., 1992 JAX:002595
Mouse : CR3022Gl This paper N/A
Mouse CR3022Ma This paper N/A
Mouse CC12.1 This paper N/A
Mouse : CLK09 Wang et al., 2021a N/A
Mouse : CLK19 Wang et al., 2021a N/A

Oligonucleotides

sgRNA Lin et al., 2018; Wang et al., 2021a N/A

Recombinant DNA

Plasmids for CR3022Gl, Ma and CC12.1 Produced in house N/A

Software and algorithms

FlowJo 10.8.1 Treestar https://www.flowjo.com/
Prism 8.4.3 GraphPad https://www.graphpad.com/
Leginon Suloway et al., 2005 https://emg.nysbc.org/redmine/projects/leginon/wiki/Leginon_Homepage
Appion Lander et al., 2009 N/A
DogPicker Voss et al., 2009 N/A
RELION Scheres et al., 2012 https://relion.readthedocs.io/en/release-3.1/
UCSF Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/

Other

BD LSRfortessa BD Biosciences N/A
BD FACS ARIA II instrument BD Biosciences N/A
0.5 ml -10 kDa concentrator Amicon Ultra CAT #: UFC803096
15 ml-10 kDa concentrator Amicon Ultra CAT #: UFC901024
Protein G Sepharose 4 Fast Flow Cytiva CAT #: 17127903
AKTA pure system Cytiva N/A
FEI Tecnai Spirit T12 transmission electron microscope N/A
TemCam F416 CMOS 4k x 4k camera TVIPS N/A
BioTek Synergy Neo2 Biotek N/A
Biotek EL406 washer/dispenser Biotek N/A
Superdex 200 Increase 10/300 GL GE Healthcare Cytiva 28-9909-44