REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Hamster monoclonal anti-mouse CD95 PE-Cy7 (clone: Jo2) | BD Biosciences | CAT#:557653 |
Rat monoclonal anti-mouse CD38 A700 (clone: 90) | Invitrogen | CAT#:56-0381-82 |
Mouse monoclonal anti-mouse CD45.2 PE (clone: 104) | Biolegend | CAT#:109808 |
Mouse monoclonal anti-mouse CD45.1 PerCP Cy5.5 (clone: A20) | Biolegend | CAT#:110728 |
Mouse monoclonal anti-mouse B220 A488 or BV421 (clone: RA3-6B2) | BD Biosciences | CAT#:557669, 562922 |
Rat monoclonal anti-mouse CD138 BV650 (clone:281-2) | BD Biosciences | CAT#:564068 |
Rat monoclonal anti-mouse IgD APC-Cy7 | Biolegend | CAT#:405716 |
Rat monoclonal anti-mouse-CD16/32 purified (clone 2.4G2) | BD Biosciences | CAT#:553142 |
Rat monoclonal anti-mouse CD4 APC-eF780 (clone: RM4-5) | Invitrogen | CAT#:47-0042-80 |
Rat monoclonal anti-mouse CD8 APC-eF780 (clone: 53-6.7) | Invitrogen | CAT#:47-0081-80 |
Rat monoclonal anti-mouse F4/80 APC-eF780 (clone: BM8) | Invitrogen | CAT#:47-4801-80 |
Rat monoclonal anti-mouse Ly-6G APC-eF780 (clone: RB6-8C5) | Invitrogen | CAT#:47-5931-80 |
Monoclonal BG18_iGL0 | Produced in house | N/A |
Monoclonal BG18_Pre5 | Produced in house | N/A |
Monoclonal BG18_Pre14 | Produced in house | N/A |
Monoclonal muBG18_d42.10 | Steichen et al., 2019 | N/A |
Monoclonal PGT128 | Walker et al., 2011 | AB_2491047 |
Monoclonal VRC01 | Wu et al., 2010 | AB_2491019 |
Monoclonal PGT145 | Walker et al., 2011 | AB_2491054 |
Monoclonal RM19R | Cottrell et al., 2020 | N/A |
Rabbit polyclonal anti-His | GeneScript | CAT#A00174 |
Human monoclonal CR3022 SARS-CoV-2 Spike Glycoprotein S1 | Abcam | CAT#:ab273073 |
Alkaline Phosphatase AffiniPure Goat Anti-mouse IgG | Jackson Immuno Research | CAT#:115-055-071 |
Alkaline Phosphatase AffiniPure Goat Anti-human IgG | Jackson Immuno Research | CAT#:109-055-098 |
Biological samples | ||
Human plasma samples A (1988), B (1989) and C(1992) from Bangaru et al., 2022; Sample D from study PMID: 32540903 | Bangaru et al., 2022; ongoing study | N/A |
Immunized rhesus macaque serum | Novavax | N/A |
Chemicals, peptides, and recombinant proteins | ||
Streptavidin-A488 | Biolegend | CAT#:405235 |
Streptavidin-PE | Biolegend | CAT#:405204 |
Streptavidin-A647 | Biolegend | CAT#:405237 |
Streptavidin-BV421 | Biolegend | CAT#:405226 |
LIVE/DEAD™ Fixable Blue Dead Cell Stain Kit, for UV excitation | Thermo Fisher Scientific | CAT#: L34962 |
Sigma Adjuvant | Sigma | CAT#:S6322 |
Alhydrogel adjvant 2% | Invivogen | CAT#:Vac-alu-250 |
Papain | Sigma Aldrich | CAT #: P3125-100mg |
N332-GT2 ferritin nanoparticle | Steichen et al., 2019 | N/A |
N332-GT2 trimer | Steichen et al., 2019 | N/A |
eOD-GT8 60mer immunogen | Jardine et al., 2015 | N/A |
SARS-CoV-1 RBD monomers | Produced in house | N/A |
SARS-CoV-2 Spike Proteins | Produced in house | N/A |
SIGMAFAST p-Nitrophenyl phosphate Tablets | Sigma | CAT#: N2770-50SET |
Gentle Ag/Ab binding buffer | Pierce | CAT#:21012 |
Gentle Ag/Ab elution buffer | Pierce | CAT#:21013 |
ACK lysing buffer | Lonza | CAT#:10-548E |
Monomeric and trimeric SARS-CoV-2 and SARS-CoV receptor binding domains | This paper | N/A |
TALON Metal Affinity Resin | Takara | CAT#635652 |
ExpiFectamine 293 Transfection Kit | Thermo Fisher | Cat#A14525 |
Critical commercial assays | ||
Pan B Cell Isolation Kit II, mouse | Miltenyi Biotec | CAT#:130-104-443 |
UltraComp eBeads™ Compensation Beads | Thermo Fisher Scientific | CAT#:01-2222-42 |
Protein G chromatography cartridges, 5ml | Pierce | CAT#:89927 |
PD-10 desalting columns | GE Life Sciences | CAT#:17085101 |
Deposited data | ||
SARS-CoV-2 spike protein complexed with polyclonal Fab Human donor A Human donor B Human donor C Human donor D |
This paper | EMDB: EMD-27200 EMDB: EMD-27199 EMDB: EMD-27198 EMDB: EMD-27197 |
S protein mix + NVX-vaccinated NHPs 36057 36964 37452 37611 |
This paper | EMDB: EMD-27039 EMDB: EMD-27040 EMDB: EMD-27041 EMDB: EMD-27042 |
N332-GT2 + Mouse Fab BG18, d14 WT, d42 BG18, d42 |
This paper | EMDB: EMD-27036 EMDB: EMD-27037 EMDB: EMD-27038 |
BCR sequences for CR3022Gl | This paper | GenBank: OP079065– OP079171; GenBank: OP079441–OP079547 |
BCR sequences for CR3022Ma | This paper | GenBank: OP079172–OP079380; GenBank: OP079548–OP079756 |
BCR sequences for CC12.1 | This paper | GenBank: OP079381–OP079440; GenBank: OP079757–OP079826 |
Experimental models: Cell lines | ||
HEK-293T-F | Thermo Fisher Scientific | Cat#: R79007 |
Human: Expi293F | Thermo Fisher | Cat#A14527; RRID: CVCL_D615 |
Experimental models: Organisms/strains | ||
Mouse: B6.SJL-Ptprcapepcb/BoyJ | The Jackson Laboratory | JAX:002014 |
Mouse: C57BL/6J | The Jackson Laboratory | JAX:000664 |
Mouse : BG18gH | Lin et al., 2018 | N/A |
Mouse : BG18gH-GFP | This paper | N/A |
Mouse : MD4 | The Jackson Laboratory; Mason et al., 1992 | JAX:002595 |
Mouse : CR3022Gl | This paper | N/A |
Mouse CR3022Ma | This paper | N/A |
Mouse CC12.1 | This paper | N/A |
Mouse : CLK09 | Wang et al., 2021a | N/A |
Mouse : CLK19 | Wang et al., 2021a | N/A |
Oligonucleotides | ||
sgRNA | Lin et al., 2018; Wang et al., 2021a | N/A |
Recombinant DNA | ||
Plasmids for CR3022Gl, Ma and CC12.1 | Produced in house | N/A |
Software and algorithms | ||
FlowJo 10.8.1 | Treestar | https://www.flowjo.com/ |
Prism 8.4.3 | GraphPad | https://www.graphpad.com/ |
Leginon | Suloway et al., 2005 | https://emg.nysbc.org/redmine/projects/leginon/wiki/Leginon_Homepage |
Appion | Lander et al., 2009 | N/A |
DogPicker | Voss et al., 2009 | N/A |
RELION | Scheres et al., 2012 | https://relion.readthedocs.io/en/release-3.1/ |
UCSF Chimera | Pettersen et al., 2004 | https://www.cgl.ucsf.edu/chimera/ |
Other | ||
BD LSRfortessa | BD Biosciences | N/A |
BD FACS ARIA II instrument | BD Biosciences | N/A |
0.5 ml -10 kDa concentrator | Amicon Ultra | CAT #: UFC803096 |
15 ml-10 kDa concentrator | Amicon Ultra | CAT #: UFC901024 |
Protein G Sepharose 4 Fast Flow | Cytiva | CAT #: 17127903 |
AKTA pure system | Cytiva | N/A |
FEI Tecnai Spirit T12 transmission electron microscope | N/A | |
TemCam F416 CMOS 4k x 4k camera | TVIPS | N/A |
BioTek Synergy Neo2 | Biotek | N/A |
Biotek EL406 washer/dispenser | Biotek | N/A |
Superdex 200 Increase 10/300 GL | GE Healthcare | Cytiva 28-9909-44 |