Table 3.
Publicly available anthrax toxin gene-harboring genomes, which did not belong to the clonal, historical B. anthracis lineage (n = 10) a.
| NCBI RefSeq Accession |
Strain | Host | Geographic Location | Collection Year | GTDB Species b | panC Group c | MLST ST [CC] d | Capsule e |
|---|---|---|---|---|---|---|---|---|
| GCF_000022505.1 | 03BB102 | Human | USA (Texas: San Antonio) | 2003 | B. anthracis | III | 11 [ST-365 CC] |
cap |
| GCF_000143605.1 | CI | Chimpanzee (“Léo”) | Côte d′Ivoire (Taï National Park) | 2002 | B. anthracis | III | 935 [ST-365 CC] |
cap |
| GCF_000688755.1 | BcFL2013 | Human | USA (Florida) | 2013 | B. tropicus | II | 78 [NA] | NA |
| GCF_000789315.1 | 03BB87 | Human | USA (Texas: Lubbock) | 2003 | B. tropicus | II | 78 [NA] | bps |
| GCF_000832405.1 | 03BB102 | Human | USA (Texas: San Antonio) | 2003 | B. anthracis | III | 11 [ST-365 CC] |
cap |
| GCF_000832805.1 | G9241 | Human | USA (Louisiana) | 2004 | B. tropicus | II | 78 [NA] | bps |
| GCF_002007005.1 | LA2007 | Human | USA (Louisiana: Galliano) | 2007 | B. tropicus | II | 78 [NA] | bps |
| GCF_002117465.1 | BC-AK | Kangaroo | China (Guangxi) | 2016 | B. tropicus | II | 78 [NA] | cap |
| GCF_016027015.1 | FDAARGOS_918 | NA | NA | NA | B. anthracis | III | 11 [ST-365 CC] |
cap |
| GCF_016027575.1 | FDAARGOS_897 | NA | NA | NA | B. tropicus | II | 78 [NA] | bps |
a Corresponds to all publicly available B. cereus s.l. genomes, which (i) were not members of B. mosaicus subsp. anthracis within the 2020 Genomospecies-Subspecies-Biovar (GSB) B. cereus s.l. taxonomy [6], which (ii) harbored two or more of anthrax toxin-encoding genes cya, lef, and pagA. See Supplementary Table S3 for an extended version of this table. NA, not available; b Genome Taxonomy Database (GTDB) species assigned using GTDB Release 05-RS95 (17 July 2020) and GTDB-Tk v1.3.0; c panC phylogenetic group (I-VIII) assigned using BTyper3 v3.2.0 [40]; d Sequence type (ST) assigned using PubMLST’s seven-gene multi-locus sequence typing (MLST) scheme for “B. cereus” [38,39] and BTyper3 v3.2.0 [40]. PubMLST Clonal Complex (CC) assignments are denoted in square brackets, where applicable; e Poly-γ-D-glutamic acid capsule-encoding genes capBCADE (cap) or exopolysaccharide Bps capsule-encoding genes bpsXABCDEFGH (bps) detected in each genome using BTyper3. Hyaluronic acid capsule-encoding genes (hasABC) were detected in all genomes. NA, not applicable, as neither cap nor bps were detected in the genome.