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. 2022 Aug 26;20(8):e3001516. doi: 10.1371/journal.pbio.3001516

Macrophages take up VLDL-sized emulsion particles through caveolae-mediated endocytosis and excrete part of the internalized triglycerides as fatty acids

Lei Deng 1, Frank Vrieling 1, Rinke Stienstra 1,2, Guido J Hooiveld 1, Anouk L Feitsma 3, Sander Kersten 1,*
Editor: Rebecca Haeusler4
PMCID: PMC9455861  PMID: 36026438

Abstract

Triglycerides are carried in the bloodstream as part of very low-density lipoproteins (VLDLs) and chylomicrons, which represent the triglyceride-rich lipoproteins. Triglyceride-rich lipoproteins and their remnants contribute to atherosclerosis, possibly by carrying remnant cholesterol and/or by exerting a proinflammatory effect on macrophages. Nevertheless, little is known about how macrophages process triglyceride-rich lipoproteins. Here, using VLDL-sized triglyceride-rich emulsion particles, we aimed to study the mechanism by which VLDL triglycerides are taken up, processed, and stored in macrophages. Our results show that macrophage uptake of VLDL-sized emulsion particles is dependent on lipoprotein lipase (LPL) and requires the lipoprotein-binding C-terminal domain but not the catalytic N-terminal domain of LPL. Subsequent internalization of VLDL-sized emulsion particles by macrophages is carried out by caveolae-mediated endocytosis, followed by triglyceride hydrolysis catalyzed by lysosomal acid lipase. It is shown that STARD3 is required for the transfer of lysosomal fatty acids to the ER for subsequent storage as triglycerides, while NPC1 likely is involved in promoting the extracellular efflux of fatty acids from lysosomes. Our data provide novel insights into how macrophages process VLDL triglycerides and suggest that macrophages have the remarkable capacity to excrete part of the internalized triglycerides as fatty acids.


How do macrophages take up and process very low density lipoprotein (VLDL) particles? This study reveals that endocytic uptake of VLDLs depends on lipoprotein lipase and caveolae; internalized VLDLs are then processed by lysosomes, and the lipids are hydrolyzed and translocated to the ER for storage as triglycerides.

Introduction

Lipids are essential for all cells, either as structural components, signaling molecules, or fuel source. Lipids are transported through the bloodstream as part of lipoproteins. Whereas cholesterol is mainly carried in high-density and low-density lipoproteins, triglycerides (TG) are predominantly transported by chylomicrons and very low-density lipoproteins (VLDL). Chylomicrons have a diameter of 75 to 600 nm, carry dietary TG, and are produced by enterocytes [1]. Conversely, VLDL have an average diameter of 30 to 80 nm, carry TG that are produced endogenously, and are synthesized in the liver [2]. In the fasted state, TG are present in the blood almost entirely as part of VLDL and its remnant lipoproteins.

Macrophages are innate immune cells that form the frontline in the host’s defense against pathogens. They are specialized in the detection, phagocytosis, and destruction of bacteria and other harmful organisms. In addition, macrophages can present antigens and regulate inflammation by releasing cytokines. Besides phagocytizing and neutralizing pathogens, macrophages can also scavenge lipids, which after uptake can be stored in specialized organelles called lipid droplets. How macrophages scavenge VLDL and chylomicrons, and how the associated lipids are internalized and processed has not been well characterized.

Lipid uptake and storage in macrophages have primarily been investigated in the context of atherosclerosis [3]. Macrophages take up oxidized LDL, which is considered a key event in the pathogenesis of atherosclerotic lesions [4]. In the past decades, evidence has been accumulating that apart from LDL particles, TG-rich lipoproteins (TRL) and their remnants also contribute to atherosclerosis [5], possibly by carrying remnant cholesterol and/or by exerting a proinflammatory effect on macrophages [6]. Consistent with their purported roles in atherosclerosis, VLDL and VLDL remnants can be taken up and retained in the intima, where they can interact with macrophages [7].

The uptake of oxidized LDL and cholesterol by macrophages is mediated by a group of structurally unrelated molecular pattern recognition receptors referred to as scavenger receptors, including SCARB1, CD36, and MSR1 [8]. However, in contrast to the uptake of oxidized LDL, little is known about how macrophages take up and process VLDL particles. It has been shown that the uptake of VLDL-TG in cultured macrophages is promoted by lipoprotein lipase (LPL) [9]. Besides via its lipolytic function, LPL may enhance lipid uptake by functioning as a molecular bridge between VLDL and lipoprotein receptors and/or heparan sulfate proteoglycans [10,11]. Other steps in the uptake of VLDL-TG by macrophages remain poorly defined.

Endocytosis describes the transport of extracellular substances or particles into cells and is tightly related to the biological function of macrophages. The endocytosis pathway can be classified into several types: clathrin-dependent endocytosis, clathrin-independent endocytosis, pinocytosis, and phagocytosis [12]. The importance of clathrin-mediated endocytosis in the cellular uptake of lipids is well established. Indeed, the cellular uptake of LDL is mediated by the binding of LDL to the LDL receptor, followed by the formation of clathrin-coated pits and subsequent delivery of the lipid cargo to the lysosomes [13]. Receptor-mediated endocytosis also mediates the uptake of native or modified LDL and remnant lipoproteins in macrophages as a key step in the pathogenesis of atherosclerosis [14]. In hepatocytes, receptor-mediated endocytosis is required for the uptake of VLDL and chylomicron remnants [15]. Whether endocytosis contributes to the uptake of VLDL-TG by macrophages is unclear.

After uptake by cells, LDL is degraded in lysosomes, releasing free cholesterol. The cholesterol binds to Niemann–Pick type C2 (NPC2) before being shuttled out of the lysosome via NPC1 [1618]. Part of the cholesterol transported via this pathway may go to the plasma membrane, while another portion may go to the endoplasmic reticulum (ER). The lysosomal membrane protein STARD3 transports the cholesterol directly from the lysosome to the ER by interacting with vesicle-associated membrane protein-associated protein (VAP)A/B on the ER membrane [19]. Interestingly, STARD3 also promotes the reverse transport of cholesterol from the ER to the lysosome [14], as well as the transfer of cholesterol from the lysosome to mitochondria [20]. While there is thus substantial insight into how cholesterol is processed, transported, and stored in macrophages, our mechanistic understanding of the processing of VLDL-TG in macrophages is very limited.

Considering the growing recognition of the importance of TRL and their remnants in atherosclerosis [5], here, using VLDL-sized TG-rich emulsion particles, we aimed to study the mechanism by which VLDL-TG are taken up and processed in macrophages.

Results

VLDL-sized lipid emulsion particles are taken up by macrophages

Using a microfluidizer, TG-rich emulsion particles were prepared with a mean diameter of 60 nm, referred to as VLDL-sized emulsion particles (Fig 1A) [2]. Treatment of human primary macrophages with these particles for 6 hours led to marked lipid accumulation, as visualized using BODIPY 493/503 staining (Fig 1B) and quantified using flow cytometry (Fig 1C). Treatment with VLDL-sized emulsion particles also significantly increased the expression of lipid-sensitive genes as measured by real-time qPCR (Fig 1D). Heatmaps (Fig 1E) and volcano plots (Fig 1F) based on RNAseq analysis clearly showed the marked effect of the lipid emulsion particles on gene expression in macrophages. Interestingly, VLDL-sized emulsion particles reduced the expression of cholesterol biosynthesis genes (GO:0006695), which is consistent with the suppressive effect of unsaturated fatty acids on genes involved in cholesterol synthesis, illustrating the significant impact of the lipid emulsion particles on lipid metabolism in macrophages (Fig 1G) [21,22]. In agreement with previous studies [6,2325], VLDL-sized emulsion particles also modulated genes involved in the ER stress response (GO:0034976) (Fig 1H) and the inflammatory response (GO:0006954) (Fig 1I).

Fig 1. VLDL-sized emulsion particles promote lipid accumulation in cultured macrophages.

Fig 1

(a) The particle size distribution of VLDL-sized emulsion particles as determined by mastersizer 3000. (b) BODIPY 493/503 staining of intracellular neutral lipids in human primary macrophages treated with 0.5 mM VLDL-sized emulsion particles (referred to as VLDL-sized) for 6 hours (n = 6). (c) Mean fluoresce intensity (FITC-A) measured by flow cytometry of mouse RAW 264.7 macrophages treated with 1 mM VLDL-sized emulsion particles for 6 hours (n = 3). (d) mRNA expression of lipotoxic marker genes. (e) Heatmap and (f) volcano plot of RNAseq data of RAW 264.7 macrophages treated with VLDL-sized emulsion particles using all genes with q value less than 0.05 for any comparison. Heatmaps plotted with differentially expressed genes (p < 0.01, SLR > 1) involved in cholesterol synthesis (g), the ER stress response (h), and the inflammatory response (i). Bar graphs were plotted as mean ± SD. Scale bar depicts SLR. Data were analysed statistically using Student t test; *P < 0.05, **P < 0.01, ***P < 0.001, ***P < 0.0001. (The raw data of RNA-sequencing are available under accession number GSE203250. The FACS data are available under repository ID FR-FCM-Z5K3. Other data can be found in “S1 Raw Data”.) ER, endoplasmic reticulum; SLR, signal log ratio; VLDL, very low-density lipoprotein.

LPL is required for the uptake of VLDL-sized emulsion particles by macrophages

To determine whether LPL is required for the uptake of VLDL-sized emulsion particles by macrophages, we treated RAW 264.7 macrophages with heparin, which decreases surface LPL abundance by either releasing LPL from the cell surface or promoting internalization and degradation of LPL [26]. As expected, treatment with heparin markedly reduced macrophage LPL content (Fig 2A). Consistent with a role of LPL in the uptake of VLDL-sized emulsion particles, heparin reduced lipid accumulation in macrophages treated with the emulsion particles (Fig 2B and 2C).

Fig 2. LPL mediates VLDL uptake in cultured macrophages.

Fig 2

(a) LPL protein levels in RAW 264.7 macrophages treated with 50 UI/ml heparin for 2 hours. (b) BODIPY 493/503 staining of intracellular neutral lipids in RAW 264.7 macrophages treated with 1 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 50 UI/ml human heparin (n = 6). (c) Quantification of the fluorescence images by ImageJ (n = 6). (d) LPL mRNA and protein levels in human primary macrophages treated with control siRNA or LPL siRNA for 48 hours. (e) BODIPY 493/503 staining of intracellular neutral lipids in human macrophages treated with siCTRL or siLPL for 48 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 6 hours. (f) Mean fluorescence intensity quantified by flow cytometry (n = 3). (g) mRNA expression of selected lipid-sensitive genes. (h) BODIPY 493/503 staining of intracellular neutral lipids in human macrophages treated with siCTRL or siLPL for 48 hours followed by treatment with 0.5 mM human plasma-isolated VLDL for 6 hours (n = 6). (i) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. *p < 0.05, **p < 0.01, ***p < 0.001. (The FACS data are available under repository ID FR-FCM-Z5KY. Other data can be found in “S1 Raw Data”.) LPL, lipoprotein lipase; siRNA, small interfering RNA; VLDL, very low-density lipoprotein.

To further assess the role of LPL in macrophage uptake of VLDL-sized emulsion particles, we silenced LPL in human primary macrophages using small interfering RNA (siRNA) (Fig 2D). LPL silencing markedly reduced cellular lipid accumulation in macrophages treated with the emulsion particles, as visualized by BODIPY 493/503 staining (Fig 2E) and supported by flow cytometric analysis (Fig 2F). Consistent with lower lipid uptake, the induction of lipid-sensitive genes HILPDA, PLIN2, and PDK4 by the emulsion particles was significantly reduced by LPL silencing (Fig 2G). A similar suppressive effect of LPL silencing on lipid accumulation was observed in macrophages treated with human VLDL (Fig 2H and 2I). Overall, these data indicate that LPL is necessary for macrophage uptake of VLDL.

Uptake of VLDL-sized emulsion particles by macrophages is dependent on the C-terminal portion of LPL

Based on our data and previous data [6,27,28], we hypothesized that the catalytic function of LPL is essential for macrophage uptake of VLDL. However, GSK264220A, a catalytic inhibitor of LPL, did not significantly alter lipid accumulation in RAW 264.7 cells treated with VLDL-sized emulsion particles [22] (Fig 3A and 3B). Also, the addition of an antibody directed against the catalytic N-terminal portion of human LPL did not noticeably influence lipid accumulation in human monocyte-derived macrophages (Fig 3C and 3D). These data suggest that the uptake of VLDL-sized emulsion particles by macrophages does not require the catalytic function of LPL.

Fig 3. The C-terminal portion of LPL mediates uptake of VLDL-sized emulsion particles in cultured macrophages.

Fig 3

(a) BODIPY 493/503 staining of RAW 264.7 macrophages treated with 1 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 0.2 μM of the catalytic LPL inhibitor GSK264220 (n = 6). (b) Mean fluorescence intensity quantified by Image J (n = 4). (c) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of antibody F1 targeting the N-terminal portion of LPL (2 μg/ml) (n = 6). (d) Mean fluorescence intensity quantified by Image J (n ≥ 4). (e) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of antibody 5D2 targeting the C-terminal of LPL (2 μg/ml) (n = 6). (f) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. ****p < 0.0001. (The raw data of bar graphs can be found in “S1 Raw Data”.) LPL, lipoprotein lipase; VLDL, very low-density lipoprotein.

The above finding raises the possibility that LPL may participate in the binding of the VLDL-sized emulsion particles to the macrophage surface. To verify this notion, human primary macrophages were co-treated with VLDL-sized emulsion particles and an antibody (5D2) directed against the C-terminal portion of LPL, which mediates the binding of TRL [23]. Interestingly, the C-terminal hLPL antibody markedly decreased intracellular lipid accumulation, supporting the notion that the C-terminal region of LPL is required for macrophage uptake of VLDL-sized emulsion particles and suggesting that LPL’s role in macrophage uptake of VLDL is more as a receptor than as an enzyme (Fig 3E and 3F).

Macrophage uptake of VLDL-sized emulsion particles is mediated by caveola-mediated endocytosis

Next, we examined whether the uptake of VLDL-sized emulsion particles was mediated by endocytosis. In agreement with this notion, early endosomes could be observed in RAW 264.7 macrophages after loading with VLDL-sized emulsion particles (Fig 4A). To determine if VLDL-sized emulsion particles are taken up by macrophages via clathrin- or caveola-mediated endocytosis, RAW 264.7 macrophages were treated with VLDL-sized emulsion particles in conjunction with the endocytosis inhibitors cholopromazine and genistein, which block clathrin- and caveola-mediated endocytosis, respectively [29]. Whereas cholopromazine showed little to no effect, genistein markedly reduced intracellular lipid accumulation (Fig 4B and 4C), suggesting that VLDL-sized emulsion particles are taken up via caveola-mediated endocytosis. Genistein similarly reduced intracellular lipid accumulation in human primary macrophages treated with the emulsion particles (Fig 4D and 4E).

Fig 4. VLDL-sized emulsion particles are taken up by macrophages via caveola-mediated endocytosis.

Fig 4

(a) Early endosome staining of RAW 264.7 macrophages treated with 1 mM of VLDL-sized emulsion particles for 6 hours (n = 6). (b) BODIPY 493/503 staining of RAW 264.7 macrophages treated with 1 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 10 μg/ml chlorpromazine or 200 μM genistein (n = 6). (c) Mean fluorescence intensity quantified by Image J (n = 6). (d) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 200 μM genistein (n = 6). (e) Mean fluorescence intensity quantified by Image J (n ≥ 3). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. *p < 0.05, ****p < 0.0001. (The raw data of bar graphs can be found in “S1 Raw Data”.) VLDL, very low-density lipoprotein.

To further examine the role of caveola in the uptake of VLDL-sized emulsion particles, we silenced the CAV1 and CAV2 genes in human primary macrophages using siRNA (Fig 5A and 5B). Caveolins, encoded by CAV1 and CAV2, are the main protein components of caveolae. Silencing of CAV1 and CAV2 markedly decreased intracellular lipid accumulation after loading cells with VLDL-sized emulsion particles, as visualized by confocal microscopy (Fig 5C) and quantified by flow cytometry (Fig 5D). A similar marked reduction in intracellular lipid accumulation upon CAV1 and CAV2 silencing (Fig 5E and 5F) was observed in human primary macrophages treated with human plasma-isolated VLDL. Consistent with a role of LPL, CAV1, and CAV2 in the uptake of VLDL-sized emulsion particles, the change in expression of IL6 and MCP1 (CCL2) upon treatment with VLDL-sized emulsion particles was altered by siRNA-based silencing of these genes (S1 Fig). Collectively, these results demonstrate that VLDL-sized emulsion particles are taken up via caveolae-mediated endocytosis.

Fig 5. Silencing of Caveolin 1 and 2 impairs uptake of VLDL by macrophages.

Fig 5

(a) mRNA and protein levels of Caveolin 1 after 48-hour treatment with siCTRL or siCAV1. (b) mRNA expression of Caveolin 2 after 48-hour treatment with siCTRL or siCAV2. (c) BODIPY 493/503 staining of human macrophages treated with siCTRL, siCAV1, or siCAV2 for 48 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 6 hours (n = 6). (d) Mean fluorescence intensity quantified by flow cytometry (n = 3). (e) BODIPY 493/503 staining of human macrophages treated with siCTRL, siCAV1, or siCAV2 for 48 hours followed by treatment with 0.5 mM human plasma-isolated VLDL for 6 hours (n = 6). (f) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. **p < 0.01, ***p < 0.001. (The FACS data are available under repository FR-FCM-Z5JV and FR-FCM-Z5KZ. Other data can be found in “S1 Raw Data”.) VLDL, very low-density lipoprotein.

Treatment of RAW 264.7 macrophages with VLDL-sized emulsion particles was associated with marked up-regulation of genes involved in lysosomal function (Fig 6A). Endocytosed lipids destined for degradation are sorted into lysosomes, where they are digested by the enzyme lysosomal acid lipase (LAL). Strikingly, co-treatment of human primary macrophages treated with VLDL-sized emulsion particles with the LAL inhibitor Lalistat 2 markedly enhanced intracellular lipid accumulation (Fig 6B and 6C). Co-staining of lipids and lysosomes showed that the lipids appeared to be trapped in the lysosomal compartment. Minimal overlap in lipid and lysosomal staining was observed in the absence of LAL inhibition (Figs 6D and S2). Interestingly, non-esterified fatty acids were detected in the culture medium of macrophages previously loaded with VLDL-sized emulsion particles, which was attenuated by LAL inhibition (Fig 6E). This suggests that macrophages can release non-esterified fatty acids after uptake of TG and that this release is dependent on LAL. The increase in lipid accumulation by Lalistat 2 was accompanied by reduced expression of the lipid-sensitive genes HILPDA, PDK4, PLIN2, CXCL2 (Fig 6F). These data suggest that when LAL is inhibited, endocytosed lipids cannot further be processed and accumulate in lysosomes, preventing the transcriptional activation of lipid-sensitive genes. Taken together, we show that VLDL-sized emulsion particles are degraded via LAL in the lysosome. While most of the liberated fatty acids are destined for storage, a portion is released into the extracellular environment.

Fig 6. VLDL-sized emulsion particles are degraded by LAL.

Fig 6

(a) Heatmap showing changes in expression of genes involved in lysosome activity in RAW 264.7 macrophages treated with 1 mM VLDL-sized emulsion particles for 6 hours (p < 0.01, SLR > 1). Scale bar depicts SLR. (b) BODIPY 493/503 staining of human macrophages treated with 0.5 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 30 μM Lalistat 2 (n = 6). The cells were washed twice with PBS and then incubated in fresh medium without VLDL-sized emulsion particles for another 24 hours. (c) Mean fluorescence intensity quantified by Image J (n = 4). (d) Co-staining of lysosome (red) and neutral lipids (green) in human macrophages (n = 6). (e) Non-esterified fatty acid levels in the medium. (f) mRNA levels of lipid-sensitive genes in human macrophages. The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different compared with control or in marked comparisons according to Student t test. *p < 0.05, **p < 0.01. (The raw data of RNA-sequencing are available under accession number GSE203250. Other data can be found in “S1 Raw Data”.) LAL, lysosomal acid lipase; SLR, signal log ratio; VLDL, very low-density lipoprotein.

NPC1 silencing retains lipids derived from VLDL-sized emulsion particles in the lysosomes and reduces the extracellular release of free fatty acids

Since NPC1 mediates the lysosomal export of cholesterol, we considered the possibility that NPC1 might also be involved in lysosomal export of VLDL-derived fatty acids. Interestingly, the expression of NPC1 was significantly up-regulated by VLDL-sized emulsion particles in human primary macrophages (Fig 7A). Co-treatment of human primary macrophages treated with VLDL-sized emulsion particles with a chemical inhibitor of NPC1 was associated with markedly elevated intracellular lipid accumulation (Fig 7B), as well as with more pronounced lysosomal staining (Fig 7C). To verify the notion that lipids may be partly retained in the lysosomes upon NPC1 inactivation, we silenced NPC1 in human primary macrophages treated with VLDL-sized emulsion particles and performed co-staining for lipids and lysosomes. Remarkably, NPC1 silencing (Fig 7D) markedly increased the overlap in lipid and lysosomal staining (Figs 7E and S3), suggesting that NPC1 deficiency causes lipids to be retained in lysosomes. Concurrent with the retention of lipids in the lysosomes, NPC1 silencing significantly decreased the levels of non-esterified fatty acids in the medium of macrophages treated with VLDL-sized emulsion particles (Fig 7F). Similarly, chemical inhibition of NPC1 significantly blunted the increase in non-esterified fatty acids in the medium of macrophages treated with the emulsion particles (Fig 7G), concurrent with an increase of lysosome dysfunction-related genes (Fig 7H). Although these data do not necessarily indicate that NPC1 directly mediates free fatty acid efflux from lysosomes, they do suggest that NPC1 is involved in promoting the extracellular release of fatty acids from macrophages.

Fig 7. Part of the internalized TG in VLDL-sized emulsion particles is released from macrophages after lysosomal processing.

Fig 7

(a) mRNA levels of NPC1 in human macrophages treated with 1 mM VLDL-sized emulsion particles for 6 hours. Cells were washed twice with PBS and then incubated in fresh medium for 16 hours. (b) BODIPY 493/503 staining or (c) lysosomal staining of human macrophages treated with 0.5 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 5 μM NPC1 inhibitor U18666A (n = 6). (d) mRNA and protein levels of NPC1 in human macrophages treated with siCTRL or siNPC1. (e) Co-staining of lysosome (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siNPC1 for 72 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6). Thereafter, the cells were washed twice with PBS and incubated in fresh medium without VLDL-sized emulsion particles for 24 hours. (f) Non-esterified fatty acid concentration in culture medium from human macrophages treated with siCTRL or siNPC1 for 48 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 6 hours or (g) treatment with 0.5 mM VLDL-sized emulsion particles for 6 hours in the presence or absence of 5 μM NPC1 inhibitor U18666A. After the treatments, the cells were washed twice with PBS, followed by incubation in fresh medium without VLDL-sized emulsion particles for 16 hours. (h) mRNA levels of galectin-encoding genes. The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different compared with control or in marked comparisons according to Student t test. *p < 0.05, **p < 0.01, ****p < 0.0001. (The raw data of bar graphs can be found in “S1 Raw Data”.) TG, triglyceride; VLDL, very low-density lipoprotein.

STARD3 is required for the lysosomal export of fatty acids derived from VLDL-sized emulsion particles

In addition to NPC1, the expression of STARD3 was up-regulated by VLDL-sized emulsion particles in human macrophages (Fig 8A). Inasmuch as STARD3 mediates the transport of cholesterol from lysosomes to the ER [19], we hypothesized that STARD3 may have a similar role in the intracellular trafficking of fatty acids derived from VLDL-sized emulsion particles. In line with this hypothesis, silencing of STARD3 (Fig 8B) in human macrophages treated with VLDL-sized emulsion particles increased lipid accumulation in lysosomes and reduced lipid content in the ER (Figs 8C, 8D, S4, and S5). Unlike silencing of NPC1, silencing of STARD3 did not increase intracellular lipid accumulation nor did it influence the efflux of fatty acids into the medium (Fig 8E). These findings are most consistent with a scenario in which STARD3 is involved in commuting fatty acids from the lysosome to the ER but does not contribute to the extracellular export of fatty acids. Taken together, our data indicate that NPC1 and STARD3 have differential roles in the transport of VLDL-derived fatty acids from the lysosome to other (extra)cellular compartments. Specifically, NPC1 somehow promotes the extracellular release of (lysosomal) fatty acids, while STARD3 is involved in the transfer of lysosomal fatty acids to the ER for subsequent storage as TG.

Fig 8. NPC1 and STARD3 have differential roles in the processing of VLDL-sized emulsion particles.

Fig 8

(a) mRNA levels of STARD3 in human macrophages after treatment of 1 mM VLDL-sized emulsion particles for 6 hours. Cells were washed twice with PBS and then incubated in fresh medium for 16 hours. (b) mRNA and protein levels of STARD3 in human macrophages treated with siCTRL or siSTARD3 for 24 hours. (c) Co-staining of lysosomes (red) with neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siSTARD3 for 48 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6). Thereafter, the cells were washed twice with PBS and incubated in fresh medium without VLDL-sized emulsion particles for 24 hours. (d) Co-staining of ER (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siSTARD3. (e) Non-esterified fatty acid concentration in culture medium from siCTRL or siSTARD3-treated human macrophages. The cells were washed twice with PBS and incubated in fresh medium without VLDL-sized emulsion particles for 16 hours. The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. **p < 0.01. (The raw data of bar graphs can be found in “S1 Raw Data”.) ER, endoplasmic reticulum; VLDL, very low-density lipoprotein.

Macrophages take up chylomicron-sized emulsion particles via a similar mechanism as VLDL-sized emulsion particles

In contrast to VLDL, chylomicrons are not able to pass into the intima. Nevertheless, chylomicrons may come into direct contact with macrophages in the mesenteric lymph nodes. In addition, severely elevated chylomicron levels are associated with the accumulation of chylomicron-derived lipids within skin macrophages, giving rise to eruptive xanthomas. Accordingly, we asked whether the mechanism of uptake of chylomicrons by macrophages resembles the mechanism of uptake of VLDL. To that end, we repeated the studies using lipid emulsion particles with a mean diameter of 240 nm (S6a Fig), referred to as chylomicron-sized emulsion particles, in agreement with the reported particle sizes of median-sized chylomicrons [1]. Treatment of RAW 264.7 macrophages and human primary macrophages with these particles for 6 hours led to marked lipid accumulation (S6b Fig) and increased expression of lipid-sensitive genes (S6c Fig). Similar to VLDL-sized emulsion particles, we found that LPL, but not its catalytic activity, is required for the uptake of CHYL-sized emulsion particles by macrophages (S7 and S8 Figs) and that this process is driven by caveolae-mediated endocytosis (S9 Fig), involving caveolin 1 and 2 (S10 Fig). Additionally, the intracellular processing of CHYL-sized emulsion particles is mediated by LAL (S11 Fig). Taken together, these data indicate that the mechanisms of macrophage uptake of VLDL- and CHYL-sized emulsion particles are highly similar.

Discussion

By virtue of its ability to enter the intima and be taken up by vascular macrophages, VLDL may contribute to atherosclerosis. Here, using artificial VLDL-sized emulsion particles and human VLDL, we studied the mechanism of uptake of VLDL particles by macrophages. We found that macrophage uptake of VLDL requires LPL and is mediated by the lipoprotein-binding C-terminal domain of LPL and not by the catalytic N-terminal domain. Subsequent internalization of VLDL-TG by macrophages was shown to occur via caveolae-mediated endocytosis, followed by TG hydrolysis by LAL in the lysosome. Intriguingly, NPC1 was found to promote the extracellular efflux of fatty acids from lysosomes, while STARD3 is involved in the transfer of lysosomal fatty acids to the ER for subsequent storage as TG. These data suggest that macrophages have the remarkable capacity to excrete part of the internalized TG as fatty acids. Our data elaborate on the model put forward by Lindqvist and colleagues many years ago, who on the basis of studies using radiolabeled and unlabeled human VLDL proposed that incubation of macrophages with VLDL leads to TG accumulation via uptake of intact VLDL, mediated by either a receptor or a nonreceptor-mediated pathway and involving phagocytosis or endocytosis [30].

LPL is mainly known for its ability to catalyze the hydrolysis of TG in VLDL and chylomicrons and thereby promote the uptake of plasma TG-derived fatty acids in tissues such as the heart, skeletal muscle, white adipose tissue, and brown adipose tissue [1,31]. In addition to catalyzing TG hydrolysis, LPL can facilitate the binding and uptake of lipoprotein particles by cells independent of lipolysis [32,33]. Through its ability to interact with lipoproteins on the one hand, and heparan sulfate proteoglycans or specific surface receptors on the other hand, LPL can function as a bridge between lipoproteins and the cell surface [34]. For example, in macrophages—which are characterized by high levels of LPL expression—LPL was found to enhance the uptake of oxLDL [35]. Previous studies have shown that LPL promotes the uptake TRL-TG and -cholesterol by macrophages in vitro [30,36]. However, thus far it was not fully clear whether the stimulation of TRL-TG uptake by LPL is mainly mediated by the abovementioned lipolysis-independent bridging function—leading to whole particle uptake—or requires actual TG hydrolysis followed by cellular uptake of fatty acids [37]. Using antibodies directed against the N- or C-terminal domain of LPL, we found that macrophage uptake of TG contained in VLDL-sized emulsion particles is dependent on particle binding by LPL but not on the catalytic function of LPL. Whether binding to HSPG-bound LPL is sufficient to trigger endocytosis of the VLDL-like particles or requires an additional receptor remains to be determined.

Previous evidence suggested that LPL-catalyzed lipolysis is not required for the uptake of VLDL-TG by cultured macrophages but does have a modest stimulatory effect [30]. Further work is necessary to better define the role of the catalytic function of LPL in macrophage lipid metabolism. For example, it would be of interest to know the impact of the replacement of wild-type LPL by catalytically inactive mutated LPL on lipid uptake and metabolism in macrophages treated with VLDL-sized emulsion particles [38]. As an alternative, we considered the use of the LPL inhibitor orlistat. However, a major drawback of orlistat is that it also inhibits LAL [39], which would seriously complicate the interpretation of the data.

Our data suggest that macrophages internalize entire VLDL particles via endocytosis. Uptake of entire TRL particles has been previously observed in vascular endothelial cells of BAT and WAT [4042]. In endothelial cells, the TRL are routed through the endosomal-lysosomal pathway, where they undergo LAL-mediated processing [43]. This route strongly resembles the pathway we observed for VLDL-sized emulsion particles in human primary macrophages.

It is well established that LDL and oxLDL are taken up by cells via receptor-mediated clathrin-dependent endocytosis [4449]. In contrast, our data indicate that VLDL is taken up by macrophages via caveolae-mediated endocytosis. Specifically, we observed that genistein markedly reduced lipid accumulation in macrophages treated with VLDL-sized emulsion particles, whereas cholopromazine had no effect. Gene silencing of CAV1 and especially CAV2 also markedly reduced lipid accumulation in VLDL-treated macrophages. The difference in the type of endocytosis mediating the uptake of LDL and VLDL might be explained by the different sizes of the 2 types of particles or by differences in the composition of the lipid cargo [50]. Interestingly, previous studies found that CAV1 is enriched in lipid droplet fractions of endothelial cells and adipocytes [51,52]. It can be hypothesized that in macrophages, part of the CAV1 is similarly associated with lipid droplets, which might imply that the role of caveolins in lipid processing in macrophages may go beyond endocytosis.

The internalization and subsequent breakdown of pathogens, apoptotic cells, or particles such as lipoproteins burden the macrophage with potentially toxic macromolecules that must either be metabolized or expelled [53]. For example, internalized cholesterol can either be esterified to fatty acids and stored or it can be exported out of the macrophages via ABCA1 to apolipoprotein A-I to produce precursors for HDL particles. Through these mechanisms, macrophages are able to limit the toxic effects of excessive free cholesterol levels on the cell membrane. Similar to cholesterol, elevated intracellular levels of free fatty acids can also be damaging to cells. To restrict this lipotoxicity, macrophages and other cells are able to convert fatty acids into TG as well as use the fatty acids as fuel. However, in contrast to cholesterol, there is very little evidence in the literature that macrophages export fatty acids. Lindqvist and colleagues showed that the presence of bovine serum albumin in the culture medium markedly decreased TG content in lipid-laden macrophages, raising the suggestion that macrophages are capable of mobilizing its stored TG [30]. Consistent with this notion, we found that macrophages loaded with VLDL-sized emulsion particles release fatty acids into the medium. Moreover, we observed that this process was impaired by inactivation of LAL and NPC1. At this stage, it is unclear if extracellular fatty acid efflux is dependent on the fusion of the lysosomes with the plasma membrane or requires fatty acid transport through the cytoplasm. Since NPC1 was specifically dismissed as fatty acid transporter [54], the decreased fatty acid release upon NPC1 inactivation is probably secondary to impaired lysosomal lipolysis due to lysosomal accumulation of cholesterol, rather than reflecting a direct role of NPC1 as fatty acid transporter. Previously, it was suggested that lipid-laden macrophages may release fatty acids via the action of a nonlysosomal (presumably cytoplasmic) neutral triglyceride lipase [55]. Based on our data, we cannot exclude that the increase in fatty acid release upon NPC1 silencing was dependent on TG storage in lipid droplets and ATGL-mediated lipolysis prior to the release of the fatty acids into the medium.

Similar to our data, Mashek and colleagues recently found that fatty acids liberated by lipophagy in lysosomes can be transported out of hepatocytes and suggested that the effluxed fatty acids may be available for uptake by the same cell [56]. Based on our data, it is impossible to say whether the extracellular efflux of lysosome-derived fatty acids is needed for the storage of VLDL-TG in macrophages via re-uptake of the fatty acids. One could wonder about the rationale for exporting fatty acids from the cell if most of the fatty acids are re-taken up. Rather, the efflux of fatty acids may be a mechanism to rid the macrophage of excess fatty acids acquired via endocytosis and phagocytosis. It can be speculated that the fatty acids released by macrophages may be used as fuel by neighboring cells, similar as has been suggested for endothelial cells [52].

StAR-related lipid transfer domain-3 (STARD3) is a sterol-binding protein that promotes sterol transport by creating ER–endosome contact sites [57]. We found that STARD3 is involved in the transfer of VLDL-derived fatty acids from the lyso/endosome to the ER. Whether STARD3 directly binds fatty acids or stimulates transport by creating membrane contact sites requires further study. Our data suggest that in contrast to NPC1, STARD3 does not promote the extracellular efflux of fatty acids. NPC1 and STARD3 thus have distinct roles in the transport of VLDL-derived fatty acids from the lysosome to other (extra)cellular compartments.

Our key findings on the uptake and intracellular processing of VLDL-sized emulsion particles in macrophages were reproduced when using the larger CHYL-sized emulsion particles, suggesting that TRL are processed through a common mechanism. However, it should be noted that the range in particle sizes of our artificial CHYL-sized emulsion particles is smaller than that of human chylomicrons. Accordingly, it cannot be excluded that human chylomicrons are also taken up via other mechanisms, such as micropinocytosis. Previous in vitro studies already found large similarities in the mechanism of VLDL and chylomicron uptake and degradation by macrophages, showing among other things that macrophages are able to take up intact VLDL and chylomicron particles [30,36]. The in vivo relevance of uptake of chylomicrons by macrophages is likely limited. In contrast to VLDL and its remnants, chylomicrons are not able to penetrate the arterial wall to be taken up by macrophages. One specific location where chylomicrons do get in direct contact with macrophages is in the mesenteric lymph nodes, where excessive uptake of chylomicrons can lead to the formation of giant macrophage foam cells, as observed in ANGPTL4-deficient mice on a high fat diet [58].

Our study also has limitations. First, most of our experiments were conducted with artificial TG-rich emulsion particles. These VLDL-mimicking particles were generated with a microfluidizer using casein as emulsifier. It should be noted, though, that our key findings were verified with human VLDL. In addition, our data on the role of LPL in VLDL-TG uptake are fully consistent with previous studies that used human VLDL. The similarity in the mechanism of uptake of human VLDL and artificial VLDL-sized emulsion particles containing casein as emulsifier suggests that macrophages recognize TRL particles on the basis of size and/or lipid content rather than a specific protein component. A second limitation of our study is that the TG in VLDL-sized emulsion particles were not radioactively or fluorescently labeled. Consequently, we cannot fully exclude that part of the stored lipids may be endogenously synthesized by the macrophage in response to treatment with VLDL-sized emulsion particles. However, this contribution likely is small. In the future and when available, fluorescently labeled TG could be incorporated into the VLDL-sized emulsion particles to enable direct intracellular visualization of exogenous lipids.

In conclusion, our data suggest that the uptake of TRL-derived TG by macrophages is mediated by the lipid-binding function of LPL. After binding to LPL, TRL-TG are taken up by caveolin-mediated endocytosis, followed by LAL-catalyzed hydrolysis in the lysosomes. Subsequent processing of TRL-derived fatty acids toward storage requires the proteins NPC1, which was found to promote the extracellular efflux of fatty acids from lysosomes, and STARD3, which is involved in the transfer of lysosomal fatty acids to the ER for subsequent storage as TG. Our data provide key new insights into how macrophages take up and process TRL.

Methods

Preparation of VLDL- and chylomicron-sized lipid emulsions

The VLDL- and chylomicron-sized lipid emulsions were prepared with commercial sunflower oil (Gwoon, the Netherlands) with a microfluidizer at pressures of 400 bar and 1,200 bar, respectively, for 5 cycles. Sodium caseinate (purity 97%, Excellion, FrieslandCampina, the Netherlands) was used as an emulsifier. Caseinate was solubilized in PBS overnight at 4°C to a final concentration of 1% (w/w). Before making the nano-emulsions, 10% sunflower oil mixed with caseinate solution was pre-emulsified using an IKA Ultra turrax for 1 minute at 10,000 rpm/min. The size of the droplets was measured using a Mastersizer 3000 (Malvern Panalytical, United Kingdom).

Cell culture

RAW 264.7 macrophages

RAW 264.7 macrophages were cultured in DMEM supplemented with 10% FCS and 1% p/s. Cells were seeded at a density of 52,000 cells/cm2 and cultured overnight before treatment with emulsions for 6 hours.

Human buffy-coat primary macrophages

PBMC isolation

Human buffy-coat blood was obtained from Sanquin, the Netherlands. Briefly, 25 ml of buffy-coat blood diluted 1:1 with PBS was added to 50 ml Leucosept tubes containing 15 ml of Ficoll-Paque followed by centrifugation for 15 minutes at 800 RCF at room temperature. Afterwards, the PBMC layer was collected and washed with cold PBS for 3 times. Approximately 70 μM cell strainers were used to remove clumps/fat residues.

Monocytes isolation

Moncytes were isolated by MojoSort CD14 positive selection kits (Biolegend, California, United States) and LS columns (Miltenyi Biotec, Bergisch Gladbach, Germany). Briefly, 10 μl CD14 Nanobeads (10× pre-diluted in MACS buffer (PBS + 0.5% BSA + 2 mM EDTA)) and 90 μl MACS buffer were added per 1 × 107 PBMCs and incubated at 4°C for 15 minutes (gently mixed every 5 minutes). Afterwards, the monocytes were separated by LS columns using a Miltenyi QuadroMACS Separator.

Isolated cells were cultured in RPMI medium supplemented with 10% FCS, 1% GlutaMax, and 1% p/s at a density of 1 × 106 cells/ml. Approximately 5 ng/ml of granulocyte-macrophage colony-stimulating factor (GM-CSF; Miltenyi) was used to differentiate monocytes into macrophages. After full differentiation, cells were seeded at a density of 100,000 cells per cm2 for siRNA assay and 150,000 cells per cm2 for the other assays.

Inhibitors and heparin assay

Cells were pre-incubated with chemical inhibitors (30 μM of Lalistat 2, 0.2 μM of GSK264220A, 200 μM of genistein, 10 μg/ml of chlorpromazine, 5 μM of U18666A) for 1 hour and then continuously treated with lipid emulsions for 6 hours.

For the heparin assay, cells were treated with 50 UI/ml of heparin for 2 hours, followed by 2 times washing with PBS. Emulsions were subsequently added to the cells together with the same concentration of heparin.

Human LPL F:1 (Santa Cruz Biotechnology, California, USA) and 5D2 antibodies were added to the cell culture medium 2 hours prior to emulsion loading at the concentration of 2 μg/ml (1:100 dilution).

Genistein, Lalistat 2, chlorpromazine, and heparin were obtained from Sigma-Aldrich, Missouri, USA. GSK264220A was from Tocris (bio-techne), Abingdon, UK. LPL 5D2 antibody was contributed by Dr. Anne Beigneux, Department of Medicine, David Geffen School of Medicine, UCLA, USA.

Free fatty acids assay

For functional study of NPC1 and STARD3, GM-CSF-derived macrophages were loaded with VLDL-sized emulsion particles. After washing the cells twice with PBS, the medium was refreshed and cells were left for 16 hours. Then, medium was collected for assessment of free fatty acids using the free fatty acids kit (Instruchemie, the Netherlands) following the manufacturer’s instructions.

Quantitive RT-PCR

Total RNA was isolated using TRizol Reagent (Thermo Fisher Scientific, Massachusetts, USA). cDNA was synthesized using iScript cDNA Sythesis Kit (Bio-Rad Laboratories, California, USA) following the manufacturer’s protocol. Real-time polymerase chain reaction (RT-PCR) was performed on the CFX 384 Touch Real-Time detection system (Bio-Rad Laboratories, California, USA), using the SensiMix (BioLine, London, UK) protocol for SYBR green reactions. Mouse/human 36B4 expression was used for normalization.

Immunoblotting

The cell lysates were prepared using RIPA Lysis and Extraction Buffer (Thermo Fisher Scientific, Massachusetts, USA) or with self-prepared NP40 lysis buffer (50 mM Tris-HCl (pH 8.0), 0.5% NP40, 150 mM NaCl, 5 mM MgCl2) for cell membrane-binding proteins (LPL, Caveolin 1) and quantified with Pierce BCA Protein Assay Kit Buffer (Thermo Fisher Scientific, Massachusetts, USA). The cell lysates were separated by electrophoresis on pre-cast 4% to 15% polyacrylamide gels and transferred onto nitrocellulose membranes using a Trans-Blot Semi-Dry transfer cell (Bio-Rad Laboratories, California, USA), blocked in 5% skim milk in TBS-T (TBS buffer supplied with 1‰ TWEEN 20) and incubated with LPL antibody (F:1), caveolin-1 antibody (4H312), STARD3 antibody (H-1) (sc-166215) (Santa Cruz Biotechnology, Texas, USA), and NPC1 antibody (ab134113) (Abcam, Cambridge, UK) overnight at 4°C. Secondary antibody incubation was performed at room temperature for 1 hour. HSP90 was used for normalization (antibody was purchased from Cell Signaling Technology, Massachusetts, USA). Images were gained using the ChemiDoc MP system (Bio-Rad Laboratories, California, USA).

RNAseq analysis

Cells were treated with 1 mM VLDL-sized or chylomicron-sized lipid emulsions for 6 hours and harvested for total RNA isolation. The experiments were performed in both biological and technical triplicates. Samples of each condition from 1 experiment were pooled. Transcriptome analysis by RNA-sequencing was performed by BGI Hong Kong Company Limited (Hong Kong) following a standard protocol. In brief, RNA samples were prepared using RNeasy Mini Kit (Qiagen, Hilden, Germany) following the manufacturer’s instructions. Samples were then shipped to BGI for library construction and RNA sequencing runs on the BGISEQ-500 platform [59]. Genomic DNA was removed with 2 digestions using Amplification grade DNAse I (Invitrogen, USA). The RNA was sheared and reverse transcribed using random primers to obtain cDNA, which was used for library construction. The library quality was determined by using Bioanalyzer 2100. Thereafter, the library was used for 150-bp paired-end sequencing on the BGISEQ-500 sequencing platform. All the generated raw sequencing reads were filtered, by removing reads with adaptors, reads with more than 10% of unknown bases, and low-quality reads. Clean reads were then obtained and stored as FASTQ format.

The RNA-seq reads were used to quantify transcript abundances. To this end, the tool Salmon (version 0.14.1) [60] was used to map the reads to the GRCm38.p6 mouse genome assembly-based transcriptome sequences as annotated by the GENCODE consortium (release M22) [61]. The obtained transcript abundance estimates and lengths were then imported in R using the package tximport, scaled by average transcript length and library size, and summarized on the gene level. Such scaling corrects for bias due to correlation across samples and transcript length and has been reported to improve the accuracy of differential gene expression analysis [62]. Differential gene expression was determined using the package limma [63] utilizing the obtained scaled gene-level counts. Briefly, before statistical analyses, nonspecific filtering of the count table was performed to increase detection power, based on the requirement that a gene should have an expression level greater than 10 counts, i.e., approximately 0.45 count per million reads (cpm) mapped, for at least 3 libraries across all 9 samples. Differences in library size were adjusted by the trimmed mean of M-values normalization method [64], implemented in the package edgeR [65]. Counts were transformed to log2 (cpm) values and associated precision weights and entered into the limma analysis pipeline [66]. Differentially expressed genes were identified by using generalized linear models that incorporate empirical Bayes methods to shrink the standard errors toward a common value, thereby improving testing power [67]. All sequencing data have been submitted to the Gene Expression Omnibus (GEO) and are available under accession number GSE203250.

Confocal imaging

Cells were seeded and treated in μ-Slide 8 Well Glass plates (ibidi GmbH, Planegg, Germany) and visualized with Leica SP8-SMD confocal microscope (Leica Microsystems, Wetzlar, Germany) equipped with a 63 × 1.20 NA water-immersion objective lens. Images were acquired using 1,024 × 1,024 pixels with the pinhole set at 1 airy unit (AU). Excitation of the fluorescent probes was performed using white light laser (WLL, 50% laser output). Fluorescent emission was detected using an internal hybrid (HyD) detector. At least 3 entire images and 3 single-cell images were taken for each replicate. The experiments are a minimum of 2 biological duplicates.

Lipid droplet accumulation was measured on 3.7% formaldehyde fixed cells after 20-minute incubation with 2 μg/ml BODIPY 493/503 (Thermo Fisher Scientific, Massachusetts, USA) and mounted with Vectashield-H anti-fade medium (Vector Laboratories, California, USA). The WLL laser line (488 nm) was set at a laser power of 2.5%, and emission was detected selecting a spectral window of 505 to 550 nm.

ER was stained in live cells using ER Staining Kit—Red Fluorescence—Cytopainter (ab139482) (Abcam, Cambridge, UK) following the manufacturer’s protocol. The principle of the stain reagent provided by the manufacturer is binding to the sulphonylurea receptors of ATP-sensitive K+ channels, which are prominent on the ER. Briefly, cells were stained with 1.5 μl/ml Detection Reagent and cultured with colorless DMEM for 45 minutes at 37°C before detection by microscopy. The WLL laser line (596 nm) was set at a laser power of 5%, and emission was detected selecting a spectral window of 670 to 720 nm.

Lysosome were stained in live cells using LysoTracker Deep Red (Thermo Fisher Scientific, Massachusetts, USA) following the manufacturer’s protocol. The LysoTracker probes consist of a fluorophore linked to a weak base that is only partially protonated at neutral pH. This allows LysoTracker probes to freely permeate cell membranes, enabling them to label live cells. LysoTracker probes are highly selective for acidic organelles. Briefly, cells were stained with 75 nM fluorescence probe and cultured with colorless DMEM for 60 minutes at 37°C before detection by microscopy. The WLL laser line (647 nm) was set at a laser power of 5%, and emission was detected selecting a spectral window of 670 to 720 nm.

Early endosomes were stained by CellLight Early Endosomes-RFP, BacMam 2.0 Kit (Thermo Fisher Scientific, Massachusetts, USA). In brief, cells were incubated overnight with 40 μl/ml CellLight reagent, fixed with 3.7% formaldehyde, and mounted with Vectashield-H anti-fade medium. The WLL laser line (555 nm) was set at a laser power of 5%, and emission was detected selecting a spectral window of 565 to 700 nm. Human primary macrophages for co-staining assays were cultured overnight in fresh medium after the lipid treatment to allow for sufficient intracellular lipid transportation.

When performing co-staining of neutral lipids with ER, 2μg/ml BODIPY 493/503 and 1.5 μl/ml ER Detection Reagent were mixed in 1× Assay Buffy (equipped in ER kit). For lipid droplets-lysosome co-staining, the reagents were mixed in colorless DMEM. The co-staining duration followed the requirement of ER staining or lysosome staining.

All staining operations and confocal imaging were protected from light as much as possible.

Flow cytometry analysis

Human primary macrophages (GM-CSF) were seeded in 24-well plates with a density as previously described and treated with 0.5 mM lipid emulsions for 6 hours. Approximately 1 μg/ml BODIPY 493/503 was used for cellular lipid droplet staining. After 20 minutes of incubation with BODIPY at 37°C, cells were twice washed with PBS and then trypsinized. Samples were measured on a CytoFLEX cytometer (Beckman Coulter, Indianapolis, USA), and data were analyzed by FlowJo (BD, Oregon, USA).

siRNA gene knock down assay

Silencing of LPL, CAV1, CAV2, NPC1, and STARD3 in GM-CSF buffy coat human macrophages was carried out using ON-TARGETplus siRNA SMARTpool kits (Horizon Discovery Research company, Waterbeach, UK) following the instructions of the manufacturer. Briefly, GM-CSF macrophages were seeded in the desired plates at the density specified before and cultured overnight. Approximately 50 nM of siRNA was applied together with Lipofectamine RNAiMAX Transfection Reagent (Thermo Fisher Scientific, Massachusetts, USA) for 48 hours. Real time-qPCR and immunoblotting were used to assess the transfection efficiency. The sequences of the siRNAs are listed in S1 Table.

Statistical analysis

Data are presented as mean ± SD. Data analysis were performed using unpaired Student t test. GO cellular components analysis was completed by Enrichr [6870]. All other plots on transcriptome data were generated by Graphpad Prism 8.

Supporting information

S1 Raw Data Checklist. Locations of raw data of figures in the paper.

(XLSX)

S1 Raw Images. Original blots for the western blotting figures in the paper.

(PDF)

S1 Raw Data. Original data of qPCR data, image J quantification, and other graphs.

(ZIP)

S1 Table. Target sequences for siRNA used in the study.

(DOCX)

S1 Fig. Silencing of LPL, CAV1, and CAV2 modulated the expression of cytokines altered by lipid treatment.

Human primary macrophages were treated with 1 mM VLDL-sized emulsion particles for 24 hours. The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different in the marked comparisons according to Student t test. *p < 0.05, **p < 0.01. (The raw data can be found in “S1 Raw Data”.)

(TIF)

S2 Fig. Neutral lipids retained in lysosomes after inhibiting lysosomal acid lipase.

The figure illustrates single channel images of co-staining of lysosome (red) and neutral lipids (BODIPY 493/503, green) in human macrophages in the presence or absence of 30 μM Laslistat 2 (n = 6). Cells were treated with 0.5 mM VLDL-sized emulsion particles for 24 hours. Before imaging, cells were washed twice with PBS and cultured in fresh medium for 24 hours.

(TIF)

S3 Fig. Neutral lipids retained in lysosomes of siNPC1-treated human primary macrophages.

The figure illustrates single channel images of co-staining of lysosome (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siNPC1 for 72 hours, followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6). Before imaging, cells were washed twice with PBS and cultured in fresh medium for 24 hours.

(TIF)

S4 Fig. Increased lipid accumulation in lysosomes by STARD3 silencing.

The figure presents single channel images for co-staining of lysosomes (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siSTARD3 for 48 hours and followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6). Before imaging, cells were washed twice with PBS and cultured in fresh medium for 24 hours.

(TIF)

S5 Fig. STARD3 silencing impairs accumulation of neutral lipids in the ER.

The figure presents single channel images for co-staining of ER (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siSTARD3 for 48 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6).

(TIF)

S6 Fig. CHYL-sized emulsion particles promote lipid accumulation in cultured macrophages.

(a) The particle size distribution of CHYL-sized emulsion particles as determined by mastersizer 3000. (b) Mean fluorescence intensity (FITC-A) measured by flow cytometry of mouse RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours (n = 3). (c) mRNA expression of lipotoxic marker genes in RAW 264.7 macrophages. Bar graphs were plotted as mean ± SD. Statistical significance was analysed using 2-way ANOVA; *p < 0.05, **p < 0.01, ***p < 0.001, ***p < 0.0001. (The FACS data are available under repository ID FR-FCM-Z5K3. The raw data of bar graphs can be found in “S1 Raw Data”.)

(TIF)

S7 Fig. LPL mediates uptake of CHYL-sized emulsion particles in cultured macrophages.

(a) BODIPY 493/503 staining of intracellular neutral lipids in RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 50 UI/ml human heparin (n = 6). (b) Quantification of the fluorescence images by ImageJ (n = 4). (c) BODIPY 493/503 staining of intracellular neutral lipids in human macrophages treated with siCTRL or siLPL for 48 hours followed by treatment with 0.5 mM CHYL-sized emulsion particles for 6 hours (n = 6). (d) Mean fluorescence intensity quantified by flow cytometry (n = 3). (e) mRNA expression of selected lipid-sensitive genes. (f) BODIPY 493/503 staining of intracellular neutral lipids in human macrophages treated with siCTRL or siLPL for 48 hours followed by treatment with 0.5 mM human plasma isolated CHYL for 6 hours (n = 6). (g) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. *p < 0.05, **p < 0.01, ***p < 0.001. (The FACS data are available under repository ID FR-FCM-Z5KY. The raw data of bar graphs can be found in “S1 Raw Data”.)

(TIF)

S8 Fig. The C-terminal portion of LPL mediates uptake of CHYL-sized emulsion particles in cultured macrophages.

(a) BODIPY 493/503 staining of RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 0.2 μM of the catalytic LPL inhibitor GSK264220 (n = 6). (b) Mean fluorescence intensity quantified by Image J (n ≥ 4). (c) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of antibody F1 targeting the N-terminal portion of LPL (2 μg/ml) (n = 6). (d) Mean fluorescence intensity quantified by Image J (n ≥ 4). (e) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of antibody 5D2 targeting the C-terminal portion of LPL (2 μg/ml) (n = 6). (f) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. ****p < 0.0001. (The raw data of bar graphs can be found in “S1 Raw Data”.)

(TIF)

S9 Fig. CHYL-sized emulsion particles are taken up by macrophages via caveola-mediated endocytosis.

(a) Early endosome staining of RAW 264.7 macrophages treated with 1 mM of CHYL-sized emulsion particles for 6 hours (n = 6). (b) BODIPY 493/503 staining of RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 10 μg/ml chlorpromazine or 200 μM genistein (n = 6). (c) Mean fluorescence intensity quantified by Image J (n = 6). (d) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 200 μM genistein (n = 6). (e) Mean fluorescence intensity quantified by Image J (n = 3). The bar graphs were plotted as mean ± SD. ***p < 0.001. (The raw data of bar graphs can be found in “S1 Raw Data”.)

(TIF)

S10 Fig. Silencing of Caveolin 1 and 2 impairs uptake of CHYL-sized emulsion particles by macrophages.

(a) BODIPY 493/503 staining of human macrophages treated with siCTRL, siCAV1, or siCAV2 for 48 hours followed by treatment with 0.5 mM CHYL-sized emulsion particles for 6 hours (n = 6). (b) Mean fluorescence intensity quantified by flow cytometry (n = 3). (c) BODIPY 493/503 staining of human macrophages treated with siCTRL, siCAV1, or siCAV2 for 48 hours followed by treatment with 0.5 mM human plasma-isolated CHYL for 6 hours (n = 6). (d) Mean fluorescence intensity quantified by Image J (n = 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. *p < 0.05. (The FACS data are available under repository FR-FCM-Z5JV and FR-FCM-Z5KZ. The raw data of bar graphs can be found in “S1 Raw Data”.)

(TIF)

S11 Fig. TG in CHYL-sized emulsion particles are degraded by lysosomal acid lipase.

(a) BODIPY 493/503 staining of human macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 30 μM Lalistat 2 (n = 6). (b) Mean fluorescence intensity quantified by Image J (n = 6). (c) Heatmaps showing changes in the expression of genes involved in lysosome activity in RAW 264.7 macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours (p < 0.01, SLR > 1). Scale bar depicts SLR. (The raw data of RNA-sequencing are available under accession number GSE203250. Other data can be found in “S1 Raw Data”.)

(TIF)

Acknowledgments

The authors would like to thank Chang Sun for helping with the screening of chemical inhibitors of endocytosis, Montserrat de la Rosa Rodriguez and Qi Zheng for helping with confocal microscope technology, and Benthe van der Lugt for helping with human monocytes isolation. We thank Anne Beigneux (UCLA) for providing the LPL antibody 5D2.

Abbreviations

AU

airy unit

ER

endoplasmic reticulum

GEO

Gene Expression Omnibus

LAL

lysosomal acid lipase

LPL

lipoprotein lipase

NPC2

Niemann–Pick type C2

RT-PCR

real-time polymerase chain reaction

siRNA

small interfering RNA

SLR

signal log ratio

TG

triglyceride

TRL

TG-rich lipoprotein

VLDL

very low-density lipoprotein

WLL

white light laser

Data Availability

All sequencing data have been submitted to the Gene Expression Omnibus (GEO), and are available under accession number GSE203250. The FACS data is available in FlowRepository under the ID number FR-FCM-Z5KZ, FR-FCM-Z5K3, FR-FCM-Z5KY, and FR-FCM-Z5JV.

Funding Statement

The work was supported by the PACMAN project (181102) funded by FrieslandCampina (https://www.frieslandcampina.com/) and a CSC Scholarship (201703250072) funded by China Scholarship Council (https://www.csc.edu.cn/). S.K. is the recipient of the PACMAN grant. L.D. is the recipient of the CSC grant. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

References

  • 1.Martins IJ, Mortimer B, Miller J, Redgrave TG. Effects of particle size and number on the plasma clearance of chylomicrons and remnants. J Lipid Res. 1996;37. doi: 10.1016/S0022-2275(20)37472-1 [DOI] [PubMed] [Google Scholar]
  • 2.German JB, Smilowitz JT, Zivkovic AM. Lipoproteins: When size really matters. Curr Opin Colloid Interface Sci. 2006;11:171. doi: 10.1016/j.cocis.2005.11.006 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 3.de Gaetano M, Crean D, Barry M, Belton O. M1- and M2-type macrophage responses are predictive of adverse outcomes in human atherosclerosis. Front Immunol. 2016;7:275. doi: 10.3389/fimmu.2016.00275 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Poznyak AV, Nikiforov NG, Markin AM, Kashirskikh DA, Myasoedova VA, Gerasimova EV, et al. Overview of OxLDL and Its Impact on Cardiovascular Health: Focus on Atherosclerosis. Front Pharmacol. 2020;11. doi: 10.3389/fphar.2020.613780 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Ginsberg HN, Packard CJ, Chapman MJ, Borén J, Aguilar-Salinas CA, Averna M, et al. Triglyceride-rich lipoproteins and their remnants: Metabolic insights, role in atherosclerotic cardiovascular disease, and emerging therapeutic strategies-a consensus statement from the European Atherosclerosis Society. Eur Heart J. 2021;42:4791–4806. doi: 10.1093/eurheartj/ehab551 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Saraswathi V, Hasty AH. The role of lipolysis in mediating the proinflammatory effects of very low density lipoproteins in mouse peritoneal macrophages. J Lipid Res. 2006;47:1406–1415. doi: 10.1194/jlr.M600159-JLR200 [DOI] [PubMed] [Google Scholar]
  • 7.Nordestgaard BG, Wootton R, Lewis B. Selective Retention of VLDL, IDL, and LDL in the Arterial Intima of Genetically Hyperlipidemic Rabbits In Vivo. Arterioscler Thromb Vasc Biol. 1995;15:534–542. doi: 10.1161/01.ATV.15.4.534 [DOI] [PubMed] [Google Scholar]
  • 8.Dhaliwal BS, Steinbrecher UP. Scavenger receptors and oxidized low density lipoproteins. Clin Chim Acta. 1999:191–205. doi: 10.1016/s0009-8981(99)00101-1 [DOI] [PubMed] [Google Scholar]
  • 9.Chang HR, Josefs T, Scerbo D, Gumaste N, Hu Y, Huggins LA, et al. Role of LpL (Lipoprotein Lipase) in macrophage polarization in vitro and in vivo. Arterioscler Thromb Vasc Biol. 2019;39:1967–1985. doi: 10.1161/ATVBAHA.119.312389 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Beisiegel U. New aspects on the role of plasma lipases in lipoprotein catabolism and atherosclerosis. Atherosclerosis Elsevier Ireland Ltd. 1996:1–8. doi: 10.1016/0021-9150(95)05792-7 [DOI] [PubMed] [Google Scholar]
  • 11.Ishibashi S, Yamada N, Shimano H, Mori N, Mokuno H, Gotohda T, et al. Apolipoprotein E and lipoprotein lipase secreted from human monocyte-derived macrophages modulate very low density lipoprotein uptake. J Biol Chem. 1990;265:3040–3047. Available from: https://pubmed.ncbi.nlm.nih.gov/2303437/ [PubMed] [Google Scholar]
  • 12.Wendland B. Everything you ever wanted to know about endocytosis. Nat Cell Biol. 2001;3:E254–E254. doi: 10.1038/ncb1101-e254 [DOI] [Google Scholar]
  • 13.Lakadamyali M, Rust MJ, Zhuang X. Ligands for clathrin-mediated endocytosis are differentially sorted into distinct populations of early endosomes. Cell. 2006;124:997–1009. doi: 10.1016/j.cell.2005.12.038 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Wilhelm LP, Wendling C, Védie B, Kobayashi T, Chenard M, Tomasetto C, et al. STARD 3 mediates endoplasmic reticulum-to-endosome cholesterol transport at membrane contact sites. EMBO J. 2017;36:1412–1433. doi: 10.15252/embj.201695917 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Zanoni P, Velagapudi S, Yalcinkaya M, Rohrer L, von Eckardstein A. Endocytosis of lipoproteins. Atherosclerosis. Elsevier Ireland Ltd. 2018:273–295. doi: 10.1016/j.atherosclerosis.2018.06.881 [DOI] [PubMed] [Google Scholar]
  • 16.Mesmin B, Antonny B, Drin G. Insights into the mechanisms of sterol transport between organelles. Cellular and Molecular Life Sciences. Cell Mol Life Sci. 2013:3405–3421. doi: 10.1007/s00018-012-1247-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Infante RE, Wang ML, Radhakrishnan A, Hyock JK, Brown MS, Goldstein JL. NPC2 facilitates bidirectional transfer of cholesterol between NPC1 and lipid bilayers, a step in cholesterol egress from lysosomes. Proc Natl Acad Sci U S A. 2008;105:15287–15292. doi: 10.1073/pnas.0807328105 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18.Thelen AM, Zoncu R. Emerging Roles for the Lysosome in Lipid Metabolism. Trends Cell Biol. Elsevier. 2017:833–850. doi: 10.1016/j.tcb.2017.07.006 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Alpy F, Rousseau A, Schwab Y, Legueux F, Stoll I, Wendling C, et al. STARD3 or STARD3NL and VAP form a novel molecular tether between late endosomes and the ER. J Cell Sci. 2013;126:5500–5512. doi: 10.1242/jcs.139295 [DOI] [PubMed] [Google Scholar]
  • 20.Charman M, Kennedy BE, Osborne N, Karten B. MLN64 mediates egress of cholesterol from endosomes to mitochondria in the absence of functional Niemann-Pick Type C1 protein. J Lipid Res. 2010;51:1023–1034. doi: 10.1194/jlr.M002345 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Carroll RG, Zasłona Z, Galván-Peña S, Koppe EL, Sévin DC, Angiari S, et al. An unexpected link between fatty acid synthase and cholesterol synthesis in proinflammatory macrophage activation. J Biol Chem. 2018;293:5509–5521. doi: 10.1074/jbc.RA118.001921 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Fukumitsu S, Villareal MO, Onaga S, Aida K, Han J, Isoda H. α-Linolenic acid suppresses cholesterol and triacylglycerol biosynthesis pathway by suppressing SREBP-2, SREBP-1a and -1c expression. Cytotechnology. Springer. 2013:899–907. doi: 10.1007/s10616-012-9510-x [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23.Lookene A, Nielsen MS, Gliemann J, Olivecrona G. Contribution of the carboxy-terminal domain of lipoprotein lipase to interaction with heparin and lipoproteins. Biochem Biophys Res Commun. 2000;271:15–21. doi: 10.1006/bbrc.2000.2530 [DOI] [PubMed] [Google Scholar]
  • 24.den Hartigh LJ, Altman R, Norman JE, Rutledge JC. Postprandial VLDL lipolysis products increase monocyte adhesion and lipid droplet formation via activation of ERK2 and NFκB. Am J Physiol Heart Circ Physiol. 2014;306. doi: 10.1152/ajpheart.00137.2013 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Aflaki E, Doddapattar P, Radović B, Povoden S, Kolb D, Vujić N, et al. C16 ceramide is crucial for triacylglycerol-induced apoptosis in macrophages. Cell Death Dis. 2012;3. doi: 10.1038/cddis.2012.17 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Campos A, Nùñez R, Koenig CS, Carey DJ, Brandan E. A lipid-anchored heparan sulfate proteoglycan is present in the surface of differentiated skeletal muscle cells: Isolation and biochemical characterization. Eur J Biochem. 1993;216: 587–595. doi: 10.1111/j.1432-1033.1993.tb18178.x [DOI] [PubMed] [Google Scholar]
  • 27.Oteng AB, Ruppert PMM, Boutens L, Dijk W, Van Dierendonck XAMH, Olivecrona G, et al. Characterization of ANGPTL4 function in macrophages and adipocytes using Angptl4-knockout and Angptl4-hypomorphic mice. J Lipid Res. 2019;60:1741–1754. doi: 10.1194/jlr.M094128 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Milosavljevic D, Kontush A, Griglio S, Le Naour G, Thillet J, Chapman MJ. VLDL-induced triglyceride accumulation in human macrophages is mediated by modulation of LPL lipolytic activity in the absence of change in LPL mass. Biochim Biophys Acta—Mol Cell Biol Lipids. 2003;1631:51–60. doi: 10.1016/s1388-1981(02)00355-4 [DOI] [PubMed] [Google Scholar]
  • 29.Vercauteren D, Vandenbroucke RE, Jones AT, Rejman J, Demeester J, De Smedt SC, et al. The use of inhibitors to study endocytic pathways of gene carriers: Optimization and pitfalls. Mol Ther. 2010;18:561–569. doi: 10.1038/mt.2009.281 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Lindqvist P, Ostlund-Lindqvist AM, Witztum JL, Steinberg D, Little JA. The role of lipoprotein lipase in the metabolism of triglyceride-rich lipoproteins by macrophages. J Biol Chem. 1983;258:9086–9092. doi: 10.1016/s0021-9258(17)44634-5 [DOI] [PubMed] [Google Scholar]
  • 31.Goldberg IJ. Lipoprotein lipase and lipolysis: Central roles in lipoprotein metabolism and atherogenesis. J Lipid Res. 1996;693–707. Available from: https://pubmed.ncbi.nlm.nih.gov/8732771/. [PubMed] [Google Scholar]
  • 32.Stein Y, Stein O. Lipoprotein lipase and atherosclerosis. Atherosclerosis. 2003;170:1–9. doi: 10.1016/s0021-9150(03)00014-5 [DOI] [PubMed] [Google Scholar]
  • 33.Zheng C, Murdoch SJ, Brunzell JD, Sacks FM. Lipoprotein lipase bound to apolipoprotein B lipoproteins accelerates clearance of postprandial lipoproteins in humans. Arterioscler Thromb Vasc Biol. 2006;26:891–896. doi: 10.1161/01.ATV.0000203512.01007.3d [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34.Borén J, Lookene A, Makoveichuk E, Xiang S, Gustafsson M, Liu H, et al. Binding of Low Density Lipoproteins to Lipoprotein Lipase Is Dependent on Lipids but Not on Apolipoprotein B. J Biol Chem. 2001;276:26916–26922. doi: 10.1074/jbc.M011090200 [DOI] [PubMed] [Google Scholar]
  • 35.Hendriks WL, Van Der Boom H, Van Vark LC, Havekes LM. Lipoprotein lipase stimulates the binding and uptake of moderately oxidized low-density lipoprotein by J774 macrophages. Biochem J. 1996;314:563–568. doi: 10.1042/bj3140563 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36.Ostlund-Lindqvist AM, Gustafson S, Lindqvist P, Witztum JL, Little JA. Uptake and degradation of human chylomicrons by macrophages in culture Role of lipoprotein lipase. Arteriosclerosis. 1983;3:433–440. doi: 10.1161/01.atv.3.5.433 [DOI] [PubMed] [Google Scholar]
  • 37.Takahashi M, Yagyu H, Tazoe F, Nagashima S, Ohshiro T, Okada K, et al. Macrophage lipoprotein lipase modulates the development of atherosclerosis but not adiposity. J Lipid Res. 2013;54:1124–1134. doi: 10.1194/jlr.M035568 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38.Merkel M, Kako Y, Radner H, Cho IS, Ramasamy R, Brunzell JD, et al. Catalytically inactive lipoprotein lipase expression in muscle of transgenic mice increases very low density lipoprotein uptake: Direct evidence that lipoprotein lipase bridging occurs in vivo. Proc Natl Acad Sci U S A. 1998;95:13841–13846. doi: 10.1073/pnas.95.23.13841 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 39.Tuohetahuntila M, Molenaar MR, Spee B, Brouwers JF, Wubbolts R, Houweling M, et al. Lysosome-mediated degradation of a distinct pool of lipid droplets during hepatic stellate cell activation. J Biol Chem. 2017;292:12436–12448. doi: 10.1074/jbc.M117.778472 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 40.Bartelt A, Bruns OT, Reimer R, Hohenberg H, Ittrich H, Peldschus K, et al. Brown adipose tissue activity controls triglyceride clearance. Nat Med. 2011;17:200–206. doi: 10.1038/nm.2297 [DOI] [PubMed] [Google Scholar]
  • 41.Heine M, Fischer AW, Schlein C, Jung C, Straub LG, Gottschling K, et al. Lipolysis Triggers a Systemic Insulin Response Essential for Efficient Energy Replenishment of Activated Brown Adipose Tissue in Mice. Cell Metab. 2018;28:644–655.e4. doi: 10.1016/j.cmet.2018.06.020 [DOI] [PubMed] [Google Scholar]
  • 42.Schlein C, Fischer AW, Sass F, Worthmann A, Tödter K, Jaeckstein MY, et al. Endogenous Fatty Acid Synthesis Drives Brown Adipose Tissue Involution. Cell Rep. 2021;34:108624. doi: 10.1016/j.celrep.2020.108624 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43.Fischer AW, Jaeckstein MY, Gottschling K, Heine M, Sass F, Mangels N, et al. Lysosomal lipoprotein processing in endothelial cells stimulates adipose tissue thermogenic adaptation. Cell Metab. 2021;33:547–564.e7. doi: 10.1016/j.cmet.2020.12.001 [DOI] [PubMed] [Google Scholar]
  • 44.Maurer ME, Cooper JA. The adaptor protein Dab2 sorts LDL receptors into coated pits independently of AP-2 and ARH. J Cell Sci. 2006;119:4235–4246. doi: 10.1242/jcs.03217 [DOI] [PubMed] [Google Scholar]
  • 45.Kibbey RG, Rizo J, Gierasch LM, Anderson RGW. The LDL receptor clustering motif interacts with the clathrin terminal domain in a reverse turn conformation. J Cell Biol. 1998;142:59–67. doi: 10.1083/jcb.142.1.59 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 46.Garuti R, Jones C, Li WP, Michaely P, Herz J, Gerard RD, et al. The modular adaptor protein autosomal recessive hypercholesterolemia (ARH) promotes low density lipoprotein receptor clustering into clathrin-coated pits. J Biol Chem. 2005;280:40996–41004. doi: 10.1074/jbc.M509394200 [DOI] [PubMed] [Google Scholar]
  • 47.Ye ZJ, Go GW, Singh R, Liu W, Keramati AR, Mani A. LRP6 protein regulates low density lipoprotein (LDL) receptor-mediated LDL uptake. J Biol Chem. 2012;287:1335–1344. doi: 10.1074/jbc.M111.295287 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48.Wei J, Fu ZY, Li PS, Miao HH, Li BL, Ma YT, et al. The clathrin adaptor proteins ARH, Dab2, and numb play distinct roles in Niemann-Pick C1-Like 1 versus low density lipoprotein receptor-mediated cholesterol uptake. J Biol Chem. 2014;289:33689–33700. doi: 10.1074/jbc.M114.593764 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49.Jones NL, Willingham MC. Modified LDLs are internalized by macrophages in part via macropinocytosis. Anat Rec. 1999;255:57–68. doi: [DOI] [PubMed] [Google Scholar]
  • 50.Rejman J, Oberle V, Zuhorn IS, Hoekstra D. Size-dependent internalization of particles via the pathways of clathrin- and caveolae-mediated endocytosis. Biochem J. 2004;377:159–169. doi: 10.1042/BJ20031253 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 51.Le Lay S, Hajduch E, Lindsay MR, Le Lièpvre X, Thiele C, Ferré P, et al. Cholesterol-induced caveolin targeting to lipid droplets in adipocytes: A role for caveolar endocytosis. Traffic. 2006;7:549–561. doi: 10.1111/j.1600-0854.2006.00406.x [DOI] [PubMed] [Google Scholar]
  • 52.Kuo A, Lee MY, Sessa WC. Lipid Droplet Biogenesis and Function in the Endothelium. Circ Res. 2017;120:1289–1297. doi: 10.1161/CIRCRESAHA.116.310498 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 53.Tabas I, Bornfeldt KE. Intracellular and Intercellular Aspects of Macrophage Immunometabolism in Atherosclerosis. Circ Res. 2020;126:1209–1227. doi: 10.1161/CIRCRESAHA.119.315939 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 54.Passeggio J, Liscum L. Flux of fatty acids through NPC1 lysosomes. J Biol Chem. 2005;280:10333–10339. doi: 10.1074/jbc.M413657200 [DOI] [PubMed] [Google Scholar]
  • 55.von Hodenberg E, Khoo JC, Jensen D, Witztum JL, Steinberg D. Mobilization of stored triglycerides from macrophages as free fatty acids. Arteriosclerosis. 1984;4:630–635. doi: 10.1161/01.atv.4.6.630 [DOI] [PubMed] [Google Scholar]
  • 56.Cui W, Sathyanarayan A, Lopresti M, Aghajan M, Chen C, Mashek DG. Lipophagy-derived fatty acids undergo extracellular efflux via lysosomal exocytosis. Autophagy. 2021;17:690–705. doi: 10.1080/15548627.2020.1728097 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 57.Wilhelm LP, Tomasetto C, Alpy F. Touché! STARD3 and STARD3NL tether the ER to endosomes. Biochem Soc Trans. 2016;44:493–498. doi: 10.1042/BST20150269 [DOI] [PubMed] [Google Scholar]
  • 58.Lichtenstein L, Mattijssen F, De Wit NJ, Georgiadi A, Hooiveld GJ, Van Der Meer R, et al. Angptl4 protects against severe proinflammatory effects of saturated fat by inhibiting fatty acid uptake into mesenteric lymph node macrophages. Cell Metab. 2010;12:580–592. doi: 10.1016/j.cmet.2010.11.002 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 59.Goodwin S, McPherson JD, McCombie WR. Coming of age: Ten years of next-generation sequencing technologies. Nat Rev Genet. 2016:333–351. doi: 10.1038/nrg.2016.49 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 60.Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods. 2017;14:417–419. doi: 10.1038/nmeth.4197 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 61.Frankish A, Diekhans M, Ferreira AM, Johnson R, Jungreis I, Loveland J, et al. GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 2019;47:D766–D773. doi: 10.1093/nar/gky955 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 62.Soneson C, Love MI, Robinson MD. Differential analyses for RNA-seq: Transcript-level estimates improve gene-level inferences. F1000Research. 2016;4. doi: 10.12688/F1000RESEARCH.7563.2 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 63.Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. Limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43:e47. doi: 10.1093/nar/gkv007 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 64.Bourgon R, Gentleman R, Huber W. Independent filtering increases detection power for high-throughput experiments. Proc Natl Acad Sci U S A. 2010;107:9546–9551. doi: 10.1073/pnas.0914005107 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 65.Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26:139–140. doi: 10.1093/bioinformatics/btp616 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 66.Law CW, Chen Y, Shi W, Smyth GK. voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 2014;15. doi: 10.1186/gb-2014-15-2-r29 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 67.Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 2004;3. doi: 10.2202/1544-6115.1027 [DOI] [PubMed] [Google Scholar]
  • 68.Xie Z, Bailey A, Kuleshov MV, Clarke DJB, Evangelista JE, Jenkins SL, et al. Gene Set Knowledge Discovery with Enrichr. Curr Protoc. 2021;1:e90. doi: 10.1002/cpz1.90 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 69.Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, et al. Enrichr: Interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;14. doi: 10.1186/1471-2105-14-128 [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 70.Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, et al. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Res. 2016;44:W90–W97. doi: 10.1093/nar/gkw377 [DOI] [PMC free article] [PubMed] [Google Scholar]

Decision Letter 0

Ines Alvarez-Garcia

15 Dec 2021

Dear Dr Kersten,

Thank you for submitting your manuscript entitled "Caveolae mediated endocytosis of VLDL particles in macrophages requires NPC1 and STARD3 for further lysosomal processing" for consideration as a Research Article by PLOS Biology.

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Ines

--

Ines Alvarez-Garcia, PhD

Senior Editor

PLOS Biology

ialvarez-garcia@plos.org

Decision Letter 1

Ines Alvarez-Garcia

16 Feb 2022

Dear Dr Kersten,

Thank you for submitting your manuscript entitled "Caveolae mediated endocytosis of VLDL particles in macrophages requires NPC1 and STARD3 for further lysosomal processing" for consideration as a Research Article at PLOS Biology. Thank you also for your patience as we completed our editorial process, and please accept my apologies for the delay in providing you with our decision. Your manuscript has been evaluated by the PLOS Biology editors, an Academic Editor with relevant expertise, and by two independent reviewers.

You will see that the reviewers find the conclusions of the manuscript interesting and novel, but they also raise several issues that need to be addressed. Reviewer 1 has some concerns regarding the difference in composition of the VLDL-mimic particles used in the study and would like to see additional evidence to confirm the source of the FFAs in media. Reviewer 2 has similar concerns and also highlights some concerns regarding the use of the 5D2 antibody that should be addressed.

In light of the reviews (attached below), we will not be able to accept the current version of the manuscript, but we would welcome re-submission of a revised version that takes into account the reviewers' comments. We cannot make any decision about publication until we have seen the revised manuscript and your response to the reviewers' comments. Your revised manuscript is also likely to be sent for further evaluation by the reviewers.

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Thank you again for your submission to our journal. We hope that our editorial process has been constructive thus far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments.

Sincerely,

Ines

--

Ines Alvarez-Garcia, PhD

Senior Editor

PLOS Biology

ialvarez-garcia@plos.org

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Reviewers' comments

Rev. 1: Alison Kohan – note that this reviewer has signed her review

Overall, the hypotheses tested in this manuscript are impactful and suggest serious reconsideration of the triglyceride metabolic pathways in macrophages and how these may be functioning in diseases like atherosclerosis. The idea that macrophages have a dedicated FFA secretion process that is part of their normal uptake/metabolism of triglyceride-rich lipoproteins is intriguing. The authors use VLDL-sized casein-emulsified particles (which they call "VLDL-mimic" particles) to study the uptake and intracellular metabolism of neutral lipids in both RAW and human macrophages. In a few instances, the authors also confirm their finding using human VLDL. The authors use chemical and siRNA inhibition to block key steps in endocytosis (LPL activity and caveolin), transport to and hydrolysis in the lysosome (LAL, NPC1), and movement between organelles (using stains for lysosome, nucleus, neutral lipid) and secretion into the media (NEFA assays). Overall, the authors conclude that emulsion particle-derived lipids can be endocytosed, transported to the lysosome, and when normal metabolism to/from the lysosome is blocked (via NPC1 and STARD3), the FFA can't be secreted nor travel to the ER. The authors have developed an interesting hypothesis and I agree with their assessment that the mechanisms governing metabolism of lipoprotein TAG by immune cells is underdeveloped. However, I have some criticisms of the way the quite of experiments were carried out.

(1) Other than sharing a similar size, the VLDL-sized emulsion particles (coated with casein) do not share significant similarities to physiological VLDL. The emulsion particles have no cholesterol, no apolipoproteins, and the phospholipid source is unique from VLDL. These particles are more like milk than VLDL. The Discussion section acknowledges the drawbacks of using VLDL-mimic particles, and the authors have fully and clearly described these drawbacks. They also used human VLDL to duplicate their finding that LPL is required. This lends some confidence. However, the authors haven't duplicated other key findings using this approach. Considering this issue, I would caution against calling them VLDL-mimics. My opinion would be to remove the term "VLDL" or "VLDL-mimic", and instead adjust the title, figures, and annotations to refer to "emulsion particles" or rather than VLDL.

(2) Some details about methods and experiments appear to be missing. In the Methods section there is not enough information about how the emulsion particles were made, and why casein was chosen as the emulsifier. How was the lipid dried, solubilized, vortexed, etc.? There could also be more information about the co-stains used for neutral lipids versus lysosomes. Is there evidence for the specificity of the lysosomal stains (versus cross-staining of ER)? Finally, I can't find the experimental number (n=? in each figure legend). Assuming the n is reasonable, the statistics seem reasonably done and interpreted. Figure 8d is referred to in the text but isn't described in its figure legend. Critically, this figure purports to show transit from the lysosome to ER, but it's unclear whether the stain is still the lysosomal stain or an ER-specific stain.

(3) In some cases, the data could be interpreted in a variety of ways. For example, when NPC1 is inhibited and NEFA rises in the media, this doesn't necessarily mean that the FFA is being actively secreted from intracellular pools within the macrophage. It could mean that there is a change in the rate of FFA generation in the media (from VLDL precursor), or that FFAs (derived from VLDL in the media) are being retained in the media rather than being endocytosed. It would be helpful for this to be discussed. Similarly, because the authors use a neutral lipid stain it is hard to dissect differences between the accumulation of triglycerides and cholesterol, and in some cases the authors conclude that the stains show the movement of FFA between cellular locations. Without specific radio- or fluorescent labels, or more information about the variety of stains used, I'm unsure about how to interpret this. They do bring this issue up in the Discussion, but this concern should probably be a part of the Results as well.

In summary, despite these concerns, the findings in this manuscript add to our knowledge about extracellular triglyceride in regulating intracellular metabolism in macrophages. After reading the manuscript I kept thinking about how it might impact my own and others' work - so there is certainly potential impact. In my opinion, this manuscript (with some revisions) should be published.

Rev. 2:

I have read with interest the manuscript of Lei Deng, et al.

The manuscript shows that uptake of VLDL by the macrophage is mediated by the C terminal of LPL via caveolar-mediated endocytosis. Interestingly, NPC1 was found to promote the extracellular efflux of fatty acids from lysosomes, while Stard3 is involved in the transfer of lysosomal fatty acids to the ER for subsequent storage as triglycerides. I feel that authors' manuscript is well performed and contains interesting data from a basic research perspective. However, in my point of view, several limitations will negatively affect the study and some claims are overstated based on their evidence.

The main issue about this manuscript:

1. Much of the cited literature that is used to make the case for their hypothesis is very old and actually refers to macrophage uptake the VLDL and LPL serve as the bridge for that.

2. To my recollections, several papers mentioned that 5D2 binds to human LPL but fails to bind to mouse LPL. Because RAW 264.7 cells were derived from BALB/c mice and only express mouse LPL. Therefore, it will be confused to interpret the data (Figure 3e) that 5D2, definitely failed to block the C-terminal of mouse LPL, but impaired the vLPLm uptake on mouse macrophages. It cannot be the strong support for the main idea. Thus, the statement that C-terminal region of mouse LPL is required for macrophage uptake of vLDLm-TG is not supported by the data

3. Detecting the medium FFA and genes expression levels cannot be the strong support for that NPC1 was found to promote the extracellular efflux of fatty acids from lysosomes, while Stard3 is involved in the transfer of lysosomal fatty acids to the ER for subsequent storage as triglycerides.

4. The authors treated the RAW264.7 macrophages with 50 UI/ml of heparin for 2 hours, LPL protein levels decreased by ~20%. Several groups demonstrated that LPL can be internalized into cells, it is highly recommended to perform the immunofluorescent staining or live cell fluorescence binding experiment rather than Western blot, if you want to test the release effect of heparin on LPL.

5. The authors explained that "the LPL remaining after heparin treatment likely represents the functionally inactive intracellular LPL pool". Authors should present their data to support this idea. Previous studies showed that high levels of heparin (500U/ml) fully dissociate LPL from cell surface. We suspected that the authors could only release some proportion of LPL, the remaining LPL might be still functional.

6. In Figure2D, the LPL bands were smeared. This data is even less convincing.

7. Silencing of both Caveolin 1 and 2 will impair uptake of VLDL further, compared with single siRNA treatment?

8. Did BODIPY signals co-localize with cav-1 or cav-2 on macrophages loaded with vLDLm?

9. The author should also present single-channel images of BODIPY and lysosome marker staining on Figure 6D and Figure 7E. Otherwise, it will be difficult to interpret those data. In Figure 6d left panel, could authors observe the colocalization of BODIPY and lysosome marker?

10. In Figure 7E, right panel, it showed heterogenetic co-localization on macrophages treated with siNPC1 followed by VLDL treatment? Please explain that. We recommended to knockout those genes via Crispr. RNA interference and inhibitors did not become clear to me since low transfection efficacy and low specificity might negatively affect the results.

11. Please add the scale bar to the immunofluorescence images clearly.

12. In supplementary Figure S1G, the authors demonstrated that vLPLm or CHYLm treatment on macrophages induced the expression levels of ER stress inflammatory response related genes, did you observe the similar trend of cytokine expression (i.e., TNF-a, IL-1b, MCP-1, MCP-1, and MMP-3)? Did LPL siRNA, genistein, siCAV1, siCAV2 or 5D2 treatment rescue the phenotype?

13. The figure citation in the manuscript is in ascending numerical order. The authors should citate the figure S1a first.

14. Ref 13 and ref 19 are duplicated.

15. siRNA sequences targeted for LPL, CAV1, CAV2, NPC1 and STARD3 should be required.

Decision Letter 2

Ines Alvarez-Garcia

21 Jun 2022

Dear Dr Kersten,

Thank you for your patience while we considered your revised manuscript entitled "Caveolae-mediated endocytosis of VLDL-sized emulsion particles in macrophages requires NPC1 and STARD3 for further lysosomal processing" for publication as a Research Article at PLOS Biology. This revised version of your manuscript has been evaluated by the PLOS Biology editors, the Academic Editor and two of the original reviewers.

Based on the reviews (attached below), we are likely to accept this manuscript for publication, provided you consider the remaining points raised by Reviewer 2. Please also make sure to address the following data and other policy-related requests stated below.

In addition, we would like you to consider a suggestion to improve the title:

"Macrophages take up VLDL-sized emulsion particles through caveolae-mediated endocytosis and excrete part of the internalized triglycerides as fatty acids"

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DATA POLICY:

Thank you for providing a file including all raw data underlying the graphs shown in the figures. Please indicate what dataset belongs to each of the figures in the excel file and also where the data can be found in the figure legends. We need you to provide the data underlying the following figures:

Fig. 1A, C-I; Fig. 2C, F, G, I; Fig. 3B, D, F; Fig. 4C, E; Fig. 5A, B, D, F; Fig. 6A, C, E, F; Fig. 7A, D, F-H; Fig. 8A, B, E; Fig. S1A, B; Fig. S2A, B; Fig. S4A, B; Fig. S5A-F; Fig. S6A, B; Fig. S7A-D; Fig. S8 and Fig. S10

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Reviewers' comments:

Rev. 1: Alison Kohan

I am totally satisfied with the revised manuscript. I think the work is very well done, clearly communicated, and the main conclusion rigorously determined.

Rev. 2:

For the response to the question 1 from review 1, I prefer to refer to "emulsion particles" as reviewer1 suggested rather than "VLDLsep" which may cause readers' misunderstanding. As suggested by reviewer1, the emulsion particles have no cholesterol, no apolipoproteins, and the phospholipid source is unique from VLDL.

For the response to the question 2 from review1, it seems that the author did not response to "It could mean that there is a change in the rate of FFA generation in the media (from VLDL precursor), ".

I stay neutral for this article.

Decision Letter 3

Ines Alvarez-Garcia

9 Jul 2022

Dear Dr Kersten,

Thank you for the submission of your revised Research Article entitled "Macrophages take up VLDL-sized emulsion particles through caveolae-mediated endocytosis and excrete part of the internalized triglycerides as fatty acids" for publication in PLOS Biology. On behalf of my colleagues and the Academic Editor, Rebecca Haeusler, I am happy to say that we can in principle accept your manuscript for publication, provided you address any remaining formatting and reporting issues. These will be detailed in an email you should receive within 2-3 business days from our colleagues in the journal operations team; no action is required from you until then. Please note that we will not be able to formally accept your manuscript and schedule it for publication until you have completed any requested changes.

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Senior Editor

PLOS Biology

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Raw Data Checklist. Locations of raw data of figures in the paper.

    (XLSX)

    S1 Raw Images. Original blots for the western blotting figures in the paper.

    (PDF)

    S1 Raw Data. Original data of qPCR data, image J quantification, and other graphs.

    (ZIP)

    S1 Table. Target sequences for siRNA used in the study.

    (DOCX)

    S1 Fig. Silencing of LPL, CAV1, and CAV2 modulated the expression of cytokines altered by lipid treatment.

    Human primary macrophages were treated with 1 mM VLDL-sized emulsion particles for 24 hours. The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different in the marked comparisons according to Student t test. *p < 0.05, **p < 0.01. (The raw data can be found in “S1 Raw Data”.)

    (TIF)

    S2 Fig. Neutral lipids retained in lysosomes after inhibiting lysosomal acid lipase.

    The figure illustrates single channel images of co-staining of lysosome (red) and neutral lipids (BODIPY 493/503, green) in human macrophages in the presence or absence of 30 μM Laslistat 2 (n = 6). Cells were treated with 0.5 mM VLDL-sized emulsion particles for 24 hours. Before imaging, cells were washed twice with PBS and cultured in fresh medium for 24 hours.

    (TIF)

    S3 Fig. Neutral lipids retained in lysosomes of siNPC1-treated human primary macrophages.

    The figure illustrates single channel images of co-staining of lysosome (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siNPC1 for 72 hours, followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6). Before imaging, cells were washed twice with PBS and cultured in fresh medium for 24 hours.

    (TIF)

    S4 Fig. Increased lipid accumulation in lysosomes by STARD3 silencing.

    The figure presents single channel images for co-staining of lysosomes (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siSTARD3 for 48 hours and followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6). Before imaging, cells were washed twice with PBS and cultured in fresh medium for 24 hours.

    (TIF)

    S5 Fig. STARD3 silencing impairs accumulation of neutral lipids in the ER.

    The figure presents single channel images for co-staining of ER (red) and neutral lipids (BODIPY 493/503, green) in human macrophages treated with siCTRL or siSTARD3 for 48 hours followed by treatment with 0.5 mM VLDL-sized emulsion particles for 24 hours (n = 6).

    (TIF)

    S6 Fig. CHYL-sized emulsion particles promote lipid accumulation in cultured macrophages.

    (a) The particle size distribution of CHYL-sized emulsion particles as determined by mastersizer 3000. (b) Mean fluorescence intensity (FITC-A) measured by flow cytometry of mouse RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours (n = 3). (c) mRNA expression of lipotoxic marker genes in RAW 264.7 macrophages. Bar graphs were plotted as mean ± SD. Statistical significance was analysed using 2-way ANOVA; *p < 0.05, **p < 0.01, ***p < 0.001, ***p < 0.0001. (The FACS data are available under repository ID FR-FCM-Z5K3. The raw data of bar graphs can be found in “S1 Raw Data”.)

    (TIF)

    S7 Fig. LPL mediates uptake of CHYL-sized emulsion particles in cultured macrophages.

    (a) BODIPY 493/503 staining of intracellular neutral lipids in RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 50 UI/ml human heparin (n = 6). (b) Quantification of the fluorescence images by ImageJ (n = 4). (c) BODIPY 493/503 staining of intracellular neutral lipids in human macrophages treated with siCTRL or siLPL for 48 hours followed by treatment with 0.5 mM CHYL-sized emulsion particles for 6 hours (n = 6). (d) Mean fluorescence intensity quantified by flow cytometry (n = 3). (e) mRNA expression of selected lipid-sensitive genes. (f) BODIPY 493/503 staining of intracellular neutral lipids in human macrophages treated with siCTRL or siLPL for 48 hours followed by treatment with 0.5 mM human plasma isolated CHYL for 6 hours (n = 6). (g) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. *p < 0.05, **p < 0.01, ***p < 0.001. (The FACS data are available under repository ID FR-FCM-Z5KY. The raw data of bar graphs can be found in “S1 Raw Data”.)

    (TIF)

    S8 Fig. The C-terminal portion of LPL mediates uptake of CHYL-sized emulsion particles in cultured macrophages.

    (a) BODIPY 493/503 staining of RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 0.2 μM of the catalytic LPL inhibitor GSK264220 (n = 6). (b) Mean fluorescence intensity quantified by Image J (n ≥ 4). (c) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of antibody F1 targeting the N-terminal portion of LPL (2 μg/ml) (n = 6). (d) Mean fluorescence intensity quantified by Image J (n ≥ 4). (e) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of antibody 5D2 targeting the C-terminal portion of LPL (2 μg/ml) (n = 6). (f) Mean fluorescence intensity quantified by Image J (n ≥ 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. ****p < 0.0001. (The raw data of bar graphs can be found in “S1 Raw Data”.)

    (TIF)

    S9 Fig. CHYL-sized emulsion particles are taken up by macrophages via caveola-mediated endocytosis.

    (a) Early endosome staining of RAW 264.7 macrophages treated with 1 mM of CHYL-sized emulsion particles for 6 hours (n = 6). (b) BODIPY 493/503 staining of RAW 264.7 macrophages treated with 1 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 10 μg/ml chlorpromazine or 200 μM genistein (n = 6). (c) Mean fluorescence intensity quantified by Image J (n = 6). (d) BODIPY 493/503 staining of human primary macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 200 μM genistein (n = 6). (e) Mean fluorescence intensity quantified by Image J (n = 3). The bar graphs were plotted as mean ± SD. ***p < 0.001. (The raw data of bar graphs can be found in “S1 Raw Data”.)

    (TIF)

    S10 Fig. Silencing of Caveolin 1 and 2 impairs uptake of CHYL-sized emulsion particles by macrophages.

    (a) BODIPY 493/503 staining of human macrophages treated with siCTRL, siCAV1, or siCAV2 for 48 hours followed by treatment with 0.5 mM CHYL-sized emulsion particles for 6 hours (n = 6). (b) Mean fluorescence intensity quantified by flow cytometry (n = 3). (c) BODIPY 493/503 staining of human macrophages treated with siCTRL, siCAV1, or siCAV2 for 48 hours followed by treatment with 0.5 mM human plasma-isolated CHYL for 6 hours (n = 6). (d) Mean fluorescence intensity quantified by Image J (n = 4). The bar graphs were plotted as mean ± SD. Asterisk indicates significantly different from control according to Student t test. *p < 0.05. (The FACS data are available under repository FR-FCM-Z5JV and FR-FCM-Z5KZ. The raw data of bar graphs can be found in “S1 Raw Data”.)

    (TIF)

    S11 Fig. TG in CHYL-sized emulsion particles are degraded by lysosomal acid lipase.

    (a) BODIPY 493/503 staining of human macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours in the presence or absence of 30 μM Lalistat 2 (n = 6). (b) Mean fluorescence intensity quantified by Image J (n = 6). (c) Heatmaps showing changes in the expression of genes involved in lysosome activity in RAW 264.7 macrophages treated with 0.5 mM CHYL-sized emulsion particles for 6 hours (p < 0.01, SLR > 1). Scale bar depicts SLR. (The raw data of RNA-sequencing are available under accession number GSE203250. Other data can be found in “S1 Raw Data”.)

    (TIF)

    Attachment

    Submitted filename: PBIOLOGY-D-21-03170R2 Rebuttal.docx

    Attachment

    Submitted filename: Response to reviewer.docx

    Data Availability Statement

    All sequencing data have been submitted to the Gene Expression Omnibus (GEO), and are available under accession number GSE203250. The FACS data is available in FlowRepository under the ID number FR-FCM-Z5KZ, FR-FCM-Z5K3, FR-FCM-Z5KY, and FR-FCM-Z5JV.


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