The asymmetric unit of the title salt comprises half of the molecule and a bromide ion. The chevron-shaped cations stack as columns that are stabilized by through space electrostatic interactions and intercolumnar hydrogen bonding.
Keywords: crystal structure, pyridinium, hydrogen bonding, π–π interactions
Abstract
The asymmetric unit of the title salt, C21H18N4
2+·2Br−, comprises half of the molecule and a bromide ion. The chevron-shaped cations stack as columns in the [001] direction with suitable intermolecular distance for π–π interactions. These cationic columns are further stabilized by intercolumnar C—H⋯N hydrogen bonding with the bromide ions distributed between them.
Structure description
The N1—C1—N1(1 − x, 1 − y, z) bond angle of the chevron-shaped 1,1′-methylenebis-4,4′-bipyridinium cation in the title compound (Fig. 1 ▸) is 111.1 (4)°, which is slightly smaller than the angle of 112.3 (4)° in the corresponding PF6
− salt (Blanco et al., 2007 ▸). The packing resulting from the smaller bromide results in the cations of the title compound stacking to form columns (Fig. 2 ▸) in the [001] direction with the bromide ions distributed between them (Fig. 3 ▸). The closest intermolecular C⋯C distance between these stacked cations is 3.493 (5) Å between C5 and C8(x, y, 1 + z), which is indicative of through space electrostatic interactions (Martinez & Iverson, 2012 ▸). The structure of the aforementioned PF6
− salt does not form these stacked columns. Even with bromide ions, the structure of the slightly larger 1,1′-methylenebis{4-[(E)-2-(pyridin-4-yl)vinyl]pyridinium} dibromide dihydrate packs in back-to-back zigzag ribbons (Neal et al., 2022 ▸) instead of the columns seen in this structure. For the title compound, in the extended structure, the columns of the cation are positioned such that the H3 and H11 atoms of the bipyridinium moiety are 2.620 and 2.546 Å, respectively, from the N2(−
+ x,
− y,
+ z) atom of a pyridyl group in an adjacent column (Fig. 4 ▸). The shorter N⋯H distance for H11 results from the rotation of the pyridyl ring relative to the pyridinium ring by 21.00 (14)° [dihedral angle between the planes of the pyridinium (N1/C2–C6) and pyridyl (N2/C7–C11) rings].
Figure 1.
Ellipsoid (50%) representation of the title complex with the cation expanded by symmetry.
Figure 2.
Ellipsoid (50%) representation of the columnar stacking of the cations with distance between C5 and C8(x, y, z + 1) shown. Bromide ions are omitted for clarity.
Figure 3.
View down the crystallographic c axis showing the distribution of bromide ions (brown) between the columns of cations. Cell axes shown with ellipsoid (50%) representation.
Figure 4.
Ellipsoid (50%) representation of the inter-columnar N⋯H distances between H3 and H11 atoms of the bipyridinium and the N2(−
+ x,
− y,
+ z) atom on the terminal pyridyl ring. Bromide ions are omitted for clarity.
Synthesis and crystallization
The title compound was synthesized following published procedures (Blanco et al., 2007 ▸). Colorless block-shaped crystals were grown from the vapor diffusion of THF into a DMF solution of the compound.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 1 ▸.
Table 1. Experimental details.
Crystal data | |
Chemical formula | C21H18N4 2+·2Br− |
M r | 486.21 |
Crystal system, space group | Orthorhombic, F d d2 |
Temperature (K) | 220 |
a, b, c (Å) | 18.0776 (2), 48.2301 (5), 4.5424 (2) |
V (Å3) | 3960.45 (18) |
Z | 8 |
Radiation type | Cu Kα |
μ (mm−1) | 5.29 |
Crystal size (mm) | 0.04 × 0.02 × 0.01 |
Data collection | |
Diffractometer | XtaLAB Synergy, Dualflex, HyPix |
Absorption correction | Multi-scan CrysAlis PRO (Rigaku OD, 2021 ▸) |
T min, T max | 0.775, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21913, 2127, 2118 |
R int | 0.028 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F 2 > 2σ(F 2)], wR(F 2), S | 0.022, 0.053, 1.16 |
No. of reflections | 2127 |
No. of parameters | 123 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.26, −0.26 |
Absolute structure | Flack x determined using 895 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) |
Absolute structure parameter | −0.015 (7) |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2414314622005260/bx4020sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314622005260/bx4020Isup2.hkl
Supporting information file. DOI: 10.1107/S2414314622005260/bx4020Isup3.mol
Supporting information file. DOI: 10.1107/S2414314622005260/bx4020Isup4.cml
CCDC reference: 2173318
Additional supporting information: crystallographic information; 3D view; checkCIF report
full crystallographic data
Crystal data
C21H18N42+·2Br− | Dx = 1.631 Mg m−3 |
Mr = 486.21 | Cu Kα radiation, λ = 1.54178 Å |
Orthorhombic, Fdd2 | Cell parameters from 18629 reflections |
a = 18.0776 (2) Å | θ = 3.7–78.7° |
b = 48.2301 (5) Å | µ = 5.29 mm−1 |
c = 4.5424 (2) Å | T = 220 K |
V = 3960.45 (18) Å3 | Block, clear light colourless |
Z = 8 | 0.04 × 0.02 × 0.01 mm |
F(000) = 1936 |
Data collection
XtaLAB Synergy, Dualflex, HyPix diffractometer | 2127 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source | 2118 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.028 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 79.9°, θmin = 3.7° |
ω scans | h = −22→22 |
Absorption correction: multi-scan CrysAlisPro (Rigaku OD, 2021) | k = −60→59 |
Tmin = 0.775, Tmax = 1.000 | l = −5→5 |
21913 measured reflections |
Refinement
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.022 | w = 1/[σ2(Fo2) + (0.0076P)2 + 10.8403P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.053 | (Δ/σ)max = 0.002 |
S = 1.16 | Δρmax = 0.26 e Å−3 |
2127 reflections | Δρmin = −0.25 e Å−3 |
123 parameters | Absolute structure: Flack x determined using 895 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
1 restraint | Absolute structure parameter: −0.015 (7) |
Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.65219 (2) | 0.46137 (2) | 0.25829 (7) | 0.04764 (12) | |
N1 | 0.53731 (13) | 0.52084 (5) | 0.8226 (6) | 0.0304 (6) | |
N2 | 0.71760 (17) | 0.62446 (6) | −0.0002 (10) | 0.0532 (8) | |
C1 | 0.500000 | 0.500000 | 1.0054 (12) | 0.0327 (8) | |
H1A | 0.463945 | 0.509067 | 1.130882 | 0.039* | 0.5 |
H1B | 0.536051 | 0.490934 | 1.130908 | 0.039* | 0.5 |
C2 | 0.49878 (16) | 0.54322 (6) | 0.7299 (10) | 0.0360 (7) | |
H2 | 0.449003 | 0.545007 | 0.778057 | 0.043* | |
C3 | 0.53289 (17) | 0.56327 (6) | 0.5653 (8) | 0.0370 (8) | |
H3 | 0.506094 | 0.578632 | 0.502375 | 0.044* | |
C4 | 0.60776 (15) | 0.56086 (5) | 0.4907 (10) | 0.0318 (6) | |
C5 | 0.64502 (17) | 0.53725 (7) | 0.5872 (8) | 0.0383 (8) | |
H5 | 0.694617 | 0.534836 | 0.539168 | 0.046* | |
C6 | 0.60952 (15) | 0.51762 (6) | 0.7513 (10) | 0.0365 (6) | |
H6 | 0.635047 | 0.501967 | 0.814337 | 0.044* | |
C7 | 0.64574 (17) | 0.58273 (6) | 0.3206 (8) | 0.0353 (8) | |
C8 | 0.71058 (19) | 0.57758 (7) | 0.1703 (9) | 0.0425 (8) | |
H8 | 0.731788 | 0.560015 | 0.174291 | 0.051* | |
C9 | 0.7435 (2) | 0.59865 (7) | 0.0146 (12) | 0.0515 (9) | |
H9 | 0.786861 | 0.594616 | −0.087262 | 0.062* | |
C10 | 0.6558 (2) | 0.62938 (8) | 0.1498 (11) | 0.0561 (12) | |
H10 | 0.637202 | 0.647358 | 0.148926 | 0.067* | |
C11 | 0.6175 (2) | 0.60960 (7) | 0.3062 (11) | 0.0492 (10) | |
H11 | 0.573509 | 0.614083 | 0.400858 | 0.059* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.03445 (16) | 0.0558 (2) | 0.0527 (2) | 0.01006 (15) | −0.00518 (18) | 0.0093 (2) |
N1 | 0.0247 (11) | 0.0267 (11) | 0.0400 (16) | −0.0010 (9) | −0.0013 (10) | −0.0019 (10) |
N2 | 0.0482 (16) | 0.0388 (14) | 0.073 (2) | −0.0034 (12) | 0.015 (2) | 0.0040 (19) |
C1 | 0.0306 (18) | 0.0320 (18) | 0.035 (2) | −0.0004 (15) | 0.000 | 0.000 |
C2 | 0.0255 (13) | 0.0324 (14) | 0.0500 (19) | 0.0050 (11) | 0.0050 (16) | 0.0038 (15) |
C3 | 0.0287 (15) | 0.0304 (14) | 0.052 (2) | 0.0047 (11) | 0.0043 (14) | 0.0056 (14) |
C4 | 0.0273 (13) | 0.0283 (12) | 0.0396 (16) | −0.0010 (10) | 0.0011 (15) | −0.0045 (16) |
C5 | 0.0233 (14) | 0.0355 (16) | 0.056 (2) | 0.0030 (11) | 0.0061 (13) | 0.0021 (14) |
C6 | 0.0245 (12) | 0.0331 (14) | 0.0520 (18) | 0.0053 (10) | 0.0012 (16) | 0.0047 (16) |
C7 | 0.0315 (15) | 0.0295 (13) | 0.045 (2) | −0.0018 (11) | 0.0014 (13) | −0.0021 (13) |
C8 | 0.0353 (17) | 0.0331 (16) | 0.059 (2) | 0.0028 (13) | 0.0115 (15) | −0.0021 (14) |
C9 | 0.0421 (18) | 0.0399 (16) | 0.073 (3) | −0.0003 (13) | 0.021 (2) | −0.001 (2) |
C10 | 0.050 (2) | 0.0330 (17) | 0.085 (3) | 0.0041 (15) | 0.022 (2) | 0.0093 (18) |
C11 | 0.0384 (17) | 0.0357 (16) | 0.073 (3) | 0.0041 (13) | 0.0183 (19) | 0.0022 (18) |
Geometric parameters (Å, º)
N1—C1 | 1.468 (4) | C4—C7 | 1.477 (4) |
N1—C2 | 1.352 (4) | C5—H5 | 0.9300 |
N1—C6 | 1.354 (4) | C5—C6 | 1.365 (5) |
N2—C9 | 1.332 (4) | C6—H6 | 0.9300 |
N2—C10 | 1.330 (5) | C7—C8 | 1.379 (4) |
C1—H1A | 0.9700 | C7—C11 | 1.394 (4) |
C1—H1B | 0.9700 | C8—H8 | 0.9300 |
C2—H2 | 0.9300 | C8—C9 | 1.374 (5) |
C2—C3 | 1.369 (5) | C9—H9 | 0.9300 |
C3—H3 | 0.9300 | C10—H10 | 0.9300 |
C3—C4 | 1.400 (4) | C10—C11 | 1.376 (5) |
C4—C5 | 1.394 (4) | C11—H11 | 0.9300 |
C2—N1—C1 | 119.1 (2) | C6—C5—C4 | 120.7 (3) |
C2—N1—C6 | 120.9 (3) | C6—C5—H5 | 119.6 |
C6—N1—C1 | 120.0 (2) | N1—C6—C5 | 120.3 (3) |
C10—N2—C9 | 115.9 (3) | N1—C6—H6 | 119.9 |
N1—C1—N1i | 111.1 (4) | C5—C6—H6 | 119.9 |
N1—C1—H1A | 109.4 | C8—C7—C4 | 121.7 (3) |
N1i—C1—H1A | 109.4 | C8—C7—C11 | 117.1 (3) |
N1—C1—H1B | 109.4 | C11—C7—C4 | 121.2 (3) |
N1i—C1—H1B | 109.4 | C7—C8—H8 | 120.3 |
H1A—C1—H1B | 108.0 | C9—C8—C7 | 119.4 (3) |
N1—C2—H2 | 119.9 | C9—C8—H8 | 120.3 |
N1—C2—C3 | 120.1 (3) | N2—C9—C8 | 124.4 (3) |
C3—C2—H2 | 119.9 | N2—C9—H9 | 117.8 |
C2—C3—H3 | 119.7 | C8—C9—H9 | 117.8 |
C2—C3—C4 | 120.6 (3) | N2—C10—H10 | 117.9 |
C4—C3—H3 | 119.7 | N2—C10—C11 | 124.3 (3) |
C3—C4—C7 | 121.1 (3) | C11—C10—H10 | 117.9 |
C5—C4—C3 | 117.3 (3) | C7—C11—H11 | 120.5 |
C5—C4—C7 | 121.6 (3) | C10—C11—C7 | 119.0 (3) |
C4—C5—H5 | 119.6 | C10—C11—H11 | 120.5 |
N1—C2—C3—C4 | 0.1 (6) | C4—C7—C8—C9 | 179.8 (4) |
N2—C10—C11—C7 | 2.5 (8) | C4—C7—C11—C10 | 178.7 (4) |
C1—N1—C2—C3 | 178.4 (4) | C5—C4—C7—C8 | 20.9 (6) |
C1—N1—C6—C5 | −178.5 (4) | C5—C4—C7—C11 | −158.9 (4) |
C2—N1—C1—N1i | 87.1 (3) | C6—N1—C1—N1i | −93.5 (3) |
C2—N1—C6—C5 | 1.0 (6) | C6—N1—C2—C3 | −1.0 (6) |
C2—C3—C4—C5 | 0.9 (6) | C7—C4—C5—C6 | 178.1 (4) |
C2—C3—C4—C7 | −178.2 (4) | C7—C8—C9—N2 | 0.9 (7) |
C3—C4—C5—C6 | −0.9 (6) | C8—C7—C11—C10 | −1.1 (6) |
C3—C4—C7—C8 | −160.1 (4) | C9—N2—C10—C11 | −2.1 (8) |
C3—C4—C7—C11 | 20.1 (6) | C10—N2—C9—C8 | 0.3 (7) |
C4—C5—C6—N1 | 0.1 (6) | C11—C7—C8—C9 | −0.4 (6) |
Symmetry code: (i) −x+1, −y+1, z.
Funding Statement
Funding for this research was provided by: National Science Foundation (grant No. 1726652 to UNT; grant No. 1712066 to Austin College); Welch Foundation (grant No. AD-0007 to Austin College).
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2414314622005260/bx4020sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2414314622005260/bx4020Isup2.hkl
Supporting information file. DOI: 10.1107/S2414314622005260/bx4020Isup3.mol
Supporting information file. DOI: 10.1107/S2414314622005260/bx4020Isup4.cml
CCDC reference: 2173318
Additional supporting information: crystallographic information; 3D view; checkCIF report