Skip to main content
Springer logoLink to Springer
. 2022 Sep 13;45(9):75. doi: 10.1140/epje/s10189-022-00230-1

Hydrodynamic effects on the liquid-hexatic transition of active colloids

G Negro 1, C B Caporusso 1,, P Digregorio 2, G Gonnella 1, A Lamura 3, A Suma 1
PMCID: PMC9470657  PMID: 36098879

Abstract

We study numerically the role of hydrodynamics in the liquid-hexatic transition of active colloids at intermediate activity, where motility induced phase separation (MIPS) does not occur. We show that in the case of active Brownian particles (ABP), the critical density of the transition decreases upon increasing the particle’s mass, enhancing ordering, while self-propulsion has the opposite effect in the activity regime considered. Active hydrodynamic particles (AHP), instead, undergo the liquid-hexatic transition at higher values of packing fraction ϕ than the corresponding ABP, suggesting that hydrodynamics have the net effect of disordering the system. At increasing densities, close to the hexatic-liquid transition, we found in the case of AHP the appearance of self-sustained organized motion with clusters of particles moving coherently.

Introduction

Self-propelled particles (SPP) are the fundamental units of a broad class of theoretical models for active matter. In the context of SPP models, injected energy from the environment fuels a persistent motion of the single constituents, driving the system out of thermal equilibrium. Simplified models of SPP [14] are of crucial importance, because they offer a minimal setup to explore some of the large variety of collective behaviours observed in nature for systems of motile living bodies at different length scales, from flocking of birds and fish [5], to swarming in bacterial colonies [6] and dynamics in cells’ cytoskeleton [7].

Active Brownian Particles (ABP) models are very popular among SPP models [1, 8, 9]. Active colloids are usually spherical particles undergoing directed motion due to an active force, while both translational and rotational degrees of freedom are in contact with a stochastic thermal bath. Although the model is very simple, ABP show paradigmatic collective phenomena like motility-induced phase separation (MIPS) [1, 1013] and are therefore very interesting in order to characterize the fundamental principles governing active matter systems. Moreover, ABP are of primary use for comparisons with experimental systems of synthetic micro-swimmers [13, 14], opening the perspectives for a systematic control of active systems and collective motion, with the purpose to exploit some of their unique features for technological uses, for instance in robotics [1517], realisation of biological machines [18], or understanding of flocking intelligence [19, 20].

Of particular interest is the characterization of ABP in the dense regime, see e.g. spontaneous flow [21] or glassy behaviour [22, 23] in biological tissues, biofilms, cell mono-layers [24, 25], and can be considered a target for the development of new materials [26]. In two dimensions (2D), ABP present ordering phase transitions when the density of the system is increased [8, 9, 27, 28], which are connected to those encountered for passive hard colloids [2931]. At intermediate values of the self-propelling force, a liquid-hexatic critical transition is followed by a hexatic-solid transition, where the solid phase has quasi-long-range (QLR) positional and long-range (LR) orientational order, the hexatic phase has short-range (SR) positional and QLR orientational order, while the liquid phase is homogeneous and has SR positional and orientational order. This scenario is very similar to the theoretical Kosterlitz, Thouless, Halperin, Nelson, and Young (KTHNY) two-step scenario [3234]. If activity is high enough, instead, MIPS takes place, as a phase separation between a dense phase and a gaseous one [8].

The aforementioned features of the ABP phase diagram have been well established in the context of over-damped motion and without an explicit underlying thermo-hydrodynamic bath. At the same time, there are other interesting questions that remain to be considered. The first question concerns the role of particles mass, and in particular the interplay between inertial and active diffusion timescales, which can be varied independently [35, 36]. It has been pointed out in [37] that in three-dimensional active systems, inertia should attenuate the destabilizing effect of activity on the ordered phase. The presence of large inertia has also been shown to strongly affect the kinetic energy of the particles into the highly dense phase of MIPS [38], and to highly inhibit phase segregation [39]. However, the role of inertia in the context of dense ABP, and in particular how the particle’s mass affects the hexatic phase, has not yet been characterized. The second question concerns the role of hydrodynamic interactions in the dense phase. Regarding the influence of hydrodynamics in MIPS, it is found that in 2D MIPS is suppressed [4042], as hydrodynamics favour reorientation of particles’ self propulsion direction, while in quasi-2D systems MIPS has been observed for low-density fluids [43] and not when the fluid was made incompressible [42, 44]. For elongated colloids, steric alignment and hydrodynamics show highly non-trivial interplay, such that MIPS is enhanced for pullers and suppressed for pushers [40].

As a first step in the direction of answering these two questions, we characterize how the critical density for the liquid-hexatic transition of active particles is modified, in an intermediate activity regime where MIPS does not occur for ABP, by i) the inertial effects due to mass changes, and ii) the presence of non-isotropic interactions between colloids introduced by hydrodynamics. Hydrodynamics has been implemented by using the multi-particle collision method [45, 46], which seamlessly integrate with the dynamics of active Brownian particles [47]. In particular, we implement thermal slip boundary conditions, decoupling colloids rotational diffusion from the solvent and test the consistency of this implementation with known benchmark tests. We focus here only on 2D systems where the rotational diffusion follows the same equations as for ABP. This allows us to have an active hydrodynamic particle (AHP) model with the same friction, temperature and rotational diffusion as the ABP model, providing a way to quantitatively compare them.

We find that changing the colloids mass and introducing hydrodynamic interactions affect the critical density at which the liquid-hexatic transition occurs. In particular, mass changes lower this density with respect to over-damped ABP, while hydrodynamics increases the critical density. We also find that the system with hydrodynamics undergoes a transition from a disorganized to a self-sustained flow regime upon increasing the density, with particles moving on the same direction at high densities.

The work is organized in the following way. In Sect. 2 we discuss the numerical methods and parameter choice for the ABP model and for the AHP model, with Sect. 2.3 providing several tests for implementation of the latter model. In Sect. 3.1 we discuss how the liquid-hexatic scenario changes by varying the active colloids mass, while in Sect. 3.2 we discuss the effects due to hydrodynamics interactions. Finally we draw some conclusions discussing the main findings.

Numerical methods

In this Section we describe the numerical models. We will start with the ABP model, which follows a Langevin equation and does not include hydrodynamic interactions. We will then describe the AHP model, where hydrodynamic is accounted explicitly, and provide some numerical tests of the implementation.

Active Brownian particles (ABP)

We consider a two-dimensional system with Nc disks of mass mc and diameter σc in a square box size of side L. Each disk i has also an associated axis ni=(cosθi(t),sinθi(t)), where θi is the angle between the axis and the x-axis and which evolves over time. ni represents the direction in which the self-propulsion occurs.

The particles interact with each other via a short-ranged repulsive potential:

U(r)=4ϵ[(σr)64-(σr)32+14]Θ(σc-r) 1

where r is the inter-particle distance between the center of masses of each colloid, Θ(r) is the Heaviside function (Θ(r)=0 for r<0 and Θ(r)=1 for r0), and σ=2-1/32σc.

The evolution of the centre of mass of disks is described by a Langevin equation, with activity modelled as a force Fact of constant magnitude acting along the particle axis ni, while the propulsion axis changes its direction in time through a diffusion equation:

mcri¨=-γri˙+Factni-ijiU(rij)+ξi, 2
θ˙i=ηi, 3

where i=1,..,Nc, rij=|ri-rj| and γ is the damping coefficient. The terms ξi and ηi are Gaussian white noises that mimic the interaction with a thermal bath, with average zero and variance fixed by the fluctuation-dissipation theorem:

ξiα(t)=0,ηi(t)=0, 4
ξiα(t1)ξjβ(t2)=2kBTγδijδαβδ(t1-t2), 5
ηi(t1)ηj(t2)=2Dθδijδ(t1-t2), 6

where α,β=1,2 are the indices of the spatial coordinates, T the temperature of the system, kB the Boltzmann constant and Dθ the rotational diffusion coefficient. We express all the quantities in units of mass, length and energy (m~, σ~ and ε, respectively), with the time unit expressed as τ=(m~σ~2/ϵ)1/2. Note that we fix σc=1σ~, while mc is varied with respect to the mass unit m~. From now on we will drop the units for simplicity.

The density of the system is expressed in terms of the packing fraction ϕ=πσc2Nc/(4L2), ratio between the surface occupied by the colloids and the total system surface L2. An important adimensional number, which measures the ratio between the active work required to move a particle by σc and the typical thermal energy kBT, is the Péclet number Pe = Factσc/(kBT). Another useful adimensional number is the active Reynolds number, which measures the ratio between inertial and viscous forces acting on the colloids, React=mcFaσcγ2 [48].

The typical time scales for a single ABP are the inertial time tI=mc/γ and the persistence time tp=1/Dθ, with the latter signaling the crossover to the final diffusive regime and that depends only on the rate of rotational diffusion and not on the activity parameter. We can define a useful adimensional number as the ratio between tI and tp, to which we refer to hereafter as the persistence number pn=tI/tp.

We fix in our numerical simulations γ=10, as previously done for ABP [8] where the choice mc=1 was adopted, which corresponds to limit inertial effects at small times tI=0.1. In the following we keep fixed γ and vary the disk mass mc to consider different inertial contributions, kBT=0.05 and Dθ=3kBT/(σc2γ)=0.015. We fix Nc=16384 and vary L in order to obtain the correct packing fraction ϕ. We use LAMMPS [49] to integrate numerically the equations of motion, using a timestep Δtc=0.001 and periodic boundary conditions. We fix the Péclet number to Pe= 5, 10 and 20, and vary the packing fraction ϕ between 0.60 and 0.88. Within the range of chosen parameters, React is always smaller than one. For each set of parameters a single realization was considered which was run between 104 and 105 simulation time units after steady state was reached. In this time frame averaged quantities were computed.

Active hydrodynamics particles (AHP)

The ABP model described beforehand does not account explicitly for the solvent. In order to add this effect, we choose as model a mesoscopic method known as multi-particle collision (MPC) dynamics, first introduced in [45]. After briefly describing the MPC model, we will introduce two possible ways to couple solvent and disks, their dynamics and the specific parameters used for simulations. Tests of this implementation are presented in Sect. 2.3.

Solvent dynamics

The solvent consists of Ns identical point-like particles of mass ms embedded in a two-dimensional square box of size L. Each particle i is characterized by position ri and velocity vi, both of which are continuous variables. In this algorithm, the time is discretized in units Δts, and the evolution of the system is composed by two steps, propagation and collision, which are applied consecutively for each Δts.

In the propagation step, particles are freely streamed according to their velocities as

ri(t+Δts)=ri(t)+vi(t)Δts. 7

In order to perform the collision step, the system is partitioned into cells of a square lattice with mesh size σs. Each cell is the scattering area where a MPC occurs, which updates particles velocities according to the rule [45, 50]

vi(t+Δts)=u(t)+Ω[vi(t)-u(t)], 8

where u=(i=1mvi)/m is the mean velocity of the m colliding particles in the cell, also assumed to be the macroscopic velocity of the fluid. Ω is a rotation matrix with angle ±α (0<α<π). The angle α is fixed at the beginning of the simulation while its sign is assigned with equal probability to every cell at each time step. In each cell all the m relative velocities are rotated with the same angle. Linear momentum and kinetic energy are conserved under this dynamics.

The transport coefficients of this model can be analytically derived. In particular, for our purposes the kinematic viscosity νs and the self-diffusion coefficient Ds will be useful. In 2D the viscosity is equal to [51, 52]:

νs=σs22Δtsλσs2ns(ns-1+exp(-ns))sin2(α)-1+(ns-1+exp(-ns))(1-cos(α))6ns, 9

while the coefficient Ds is [53]:

Ds=λ22Δts2ns(ns-1+exp(-ns))(1-cos(α)), 10

where ns=Nsσs2/L2 is the average number of particles per cell and λ=ΔtskBT/ms is the mean-free path.

Solvent-colloids coupling

The next step would be to integrate the solvent particles with the colloids, which means that we need to decide how to couple colloids and solvent dynamics. Different strategies are possible and a review for MPC with passive colloids can be found in [46]; here we adopted the one implemented in the LAMMPS software [47].

In this implementation colloids are evolved for n timesteps Δtc, following the equation of motion (2) without the force terms ξi and γri˙, which accounted implicitly for the thermal bath in the ABP model, and are substituted here by the MPC bath. Afterwards solvent particles are propagated for a timestep equal to Δts=nΔtc. Note that both Δtc and Δts are expressed in the same time unit as in the ABP model. Before computing the collision (8), the algorithm checks if solvent particles are overlapping with disks having diameter σc and mass mc, that is if the position of point-like solvent particles is inside the disks area. In this case, an exchange of momentum occurs, followed by a change in the position of solvent particles to place them out of the colloids, and, finally, the collision step for solvent particles is applied.

The exchange of momentum is decided by the proper colloid–solvent boundary condition (BC) adopted, which can be either no-slip or slip. No-slip BC means that both linear and angular momentum are exchanged between colloid and solvent particles [54], while for slip BC only linear momentum is transferred as in the case with radial interactions [50]. Several implementations of the BC are available, such as the so called thermal BC [55] and the bounce-back collision rule [56]. The latter, used in the case of no-slip BC, requires the use of phantom particles inside the colloid while the former does not. Here we choose the thermal BC method, described below for the slip and no-slip cases, as it is in general useful under forced flow conditions, like the case of active particles, and is particularly suited when the solvent mean free path is much smaller than the disk radius [57, 58].

In the no-slip thermal BC, when a solvent particle of velocity v overlaps with a disk, it is moved back to the disk surface along the shortest vector rd and then streamed for a distance vΔtsε, where v is the updated velocity and ε is a uniformly distributed random number in the interval [0, 1] [59]. The new velocity v is divided in the normal vN and tangential vT velocity components with respect to the particle-colloid distance, and chosen according to the stochastic distributions

pN(vN)=(msvN/kBT)exp(-msvN2/2kBT),vN>0 11
pT(vT)=ms/2πkBTexp(-msvT2/2kBT), 12

centred around the local velocity vd of the colloid surface, where vd=V+ω×(rd-R), with R being the position of the colloid centre, V and ω the linear and angular velocities of the colloid. Regarding the change in momentum for the colloid after the collision, all the linear and angular momenta variations of the overlapping solvent particles are summed up as ΔP=sms(v-v) and ΔL=sms(rd-R)×(v-v), and the linear and angular velocities of the colloid are updated as: V=V+ΔP/mc and ω=ω+ΔL/I where I=mcσc2/8 is the moment of inertia of a disk. In case of high packing fraction of colloids, it may happen that a single solvent particle can scatter with several disks in the same timestep Δts. Ignoring such multiple collisions would cause an attractive depletion-like force between disks [59]. This effect can be kept under control allowing a maximum number NM of multiple collisions. It was found empirically that NM10 is the best choice to optimize computational speed and accuracy.

In the case of slip thermal BC, the tangential component of the fluid particle velocity is preserved during the scattering with disks; thus no torque is imparted to colloids. The normal component vN of the solvent particle new velocity v is sampled from a Gaussian distribution according to the distribution of Eq. (11) which is centered around the disk velocity V (the angular velocity is irrelevant since collisions are now treated as central) [47].

The choice between no-slip and slip BC is directly connected to the way the axis of colloids ni is evolved. In the first case, the solvent-disk interaction determines directly through torque exchange how colloids diffuse rotationally. In the second case, the rotational diffusion is accounted independently using Eq. (3). In this paper we choose the slip thermal BC for two reasons. The first one is that in this way we can choose the value of Dθ independently and match it with the one used in the ABP model. The second reason is that the integration of slip conditions is much faster than no-slip ones, since there is no need of considering the integration of disks angular velocities.

Since we will mostly deal with non-equilibrium simulations, solvent particles must be coupled to a thermostat to maintain constant temperature. We use the method of locally rescaling fluid particles velocities vi relative to the centre of mass velocity u for each cell by a proper factor that enforces the correct temperature [60]. We do not expect that this approach may alter flow profiles since, as later shown, we will adopt a very small cell size σs compared to variations in flow patterns and a very large value of ns, the average number of solvent particles per cell. Note that this implementation ensures only local linear momentum conservation, while angular and total linear momenta are not conserved, as typically ensured in simulations of swimmers [44].

Parameter choice

In the case of the MPC fluid, an additional set of simulation parameters has to be set – ns, ms, σs, α, Δts – which will be expressed in terms of the colloids units – m~, σ~, ϵ. In order to decide the MPC parameter values, a set of criteria, listed below, has to be satisfied.

The first criterion is that the solvent has to behave as a fluid (we remind that MPC particles satisfy an ideal gas equation of state); for such purpose we need to have a Schmidt number Sc102-103, typical of liquids [61]. The Schmidt number represents in fact the ratio between the rate of momentum diffusion and the rate of mass transfer, and for large values of Sc the dynamics resembles the one of a liquid [62]. Sc is defined as Sc=νs/Ds. Values ScO(10) can be obtained by requiring small values of λ and large rotation angle [62]. Note that the choice λ<σs is known to break the Galilean invariance [63], although this problem is cured by implementing the random shift procedure [63] which is here implemented. By using the expressions of νs and Ds in the limit of λ/σs1, we find that the Schmidt number depends only on the mean-free path and takes the simple form [61]:

Sc112(λ/σs)2, 13

where the dependence on ns and α has been omitted since the dominant contribution is with λ.

The second criterion is that we want to have the same value of the friction γ as in ABP simulations, where γ has the same role as in the Langevin equation. For the MPC dynamics, this formula is:

γ=C2Dπνsρs(σc/2), 14

where ρs=nsms/σs2 is the solvent density. The coefficient C2D depends on dimensionality [64] and the MPC model considered [40]. We performed simulations measuring the velocity of a colloid dragged by a constant force along a direction in 2D and we fitted a value of C2D=1.84±0.1, using six different values of forces and averaging over ten realizations. It is evident that also the choice of γ depends directly only on λ, when all the other parameters are fixed.

Regarding the active force and the rotational diffusion of the colloids axis, we do not need any change in the parameters chosen for the ABP, as the active force and the rotational diffusion are the same as the ones described in the equation of motion of the ABP model (equation (3)). Thus, the Pe number depends only on the colloids parameters, and is already set.

The last criterion that we need to follow is to have a very low compressibility in presence of the active force, in order for the fluid to remain homogeneous during the time evolution. This criterion was discussed in [40, 58]. The correct parameters to look at are the Mach number and the Pumping number. The Mach number Ma is given by the ratio between the average fluid velocity vs due to the external forces (in our case due to activity) and the sound velocity vsound=2kBT/ms inside the fluid:

Ma=vsvsound. 15

Its value depends directly on flow velocity. In order to reduce compressibility effects of the MPC fluid it should be Ma<0.2 [65, 66]. The Pumping number Pu, instead, is the ratio between the active stationary colloid velocity Fact/γ and the fluid self-diffusion:

Pu=σcFact6γDs, 16

and should be less than 1 [40] in order for the fluid-particle diffusion to be faster than activity-induced advection, thus avoiding strong density inhomogeneities in the fluid.

Following these criteria, we chose the cell size to be σs=0.2σc. This guarantees that there is a sufficiently large number of cells covering a colloid [59]. We fix α=π/2, ms=0.15 and ns=15 for the fluid. Typically the colloids and solvent mass density should match in order for the colloids to be buoyant, so we set mc=44.15 such that nsms/σs2=4mc/(πσc2). This choice provides a good compromise between avoiding compressibility effects [44], which for example arises if we choose lower ns, and computational cost, which arises with higher values of ns. We use as Δtc=10-4 and Δts=410Δtc. The temperature T for the solvent and the other parameters relative to the active force and rotational diffusion remain the same as the one used for ABP. These parameters lead to the required values of γ=10.04 (νs=0.061 and ρs=56.24), Sc=99.48, Ma=0.1 and Pu=0.9 for the highest Pe=20 value considered. We note that the Reynolds number of the fluid is given by

Re=vsσc/νs=Factσc/γνs=6PuDs/νs=6Pu/Sc, 17

which is always much less than one for our choice of the parameters. Thus we are in the low Reynolds number regime.

We start from a close-packed initial configuration of particles positioned in a triangular lattice, forming a slab, and with the orientation of the self-propelled force uniformly distributed. The initial velocities of all particles (fluid particles and colloids) were extracted from a Gaussian distribution with zero mean and variance kBT/ms and kBT/mc for solvent particles and colloids, respectively. Given that all the MPC and MD parameters are the same we are able to consider the same exact active colloids system, except for the presence of long range hydrodynamic interactions. We fix the Péclet number to Pe=10 and 20, and vary the packing fraction ϕ between 0.60 and 0.88, where the hexatic-liquid transition was found to be critical for mc=1 [8]. For each set of parameters a single realization was considered, run between 104 and 105 simulation time units after steady state was reached, and averaged quantities where performed during this time frame. To limit the computational cost for MPC simulations we always fix the box side to L=128σc, unless otherwise specified.

Validation of slip boundary conditions

We focus here on the behaviour of passive colloids embedded in a solvent to test the accuracy of the previously described slip boundary conditions with respect to known results for 2D hydrodynamics. Following Ref. [67], we measure the velocity auto-correlation function (VACF) and the diffusion coefficient Dc of colloids. The parameters chosen for the simulation are the same as described in the previous section, except that we also varied either the average number of solvent particles per cell ns or the temperature kBT, always keeping the Schmidt number Sc100. We considered large systems, with L=900σc to reduce periodic boundary effects.

At very short times, when hydrodynamics effects can be neglected, the main contribution to the overall diffusion comes from the local random collisions between colloid and solvent particles. The VACF is given by

Cu(t)=<u(t)u(0)>=kBTmcexp(-t/tE), 18

where u is a Cartesian components (either x or y) of colloids velocity, tE=mc/ξ is the Enskog time, that is the typical velocity decorrelation time, and ξ the Enskog friction coefficient given in two spatial dimensions by [67]

ξ=324σcnsπ3/2kBTmcmsmc+ms1/2. 19

The integral of the VACF is related to the diffusion coefficient Dc through the Green-Kubo relation,

Dc=0<u(t)u(0)>dt=kBTξ. 20

However, as well known [68, 69], fluid dynamic interactions have an important effect on the long-time behaviour of the VACF. Indeed, due to momentum conservation, the asymptotic form of the VACF shows an algebraic decay of the form

Cu(t)=12ρskBT[4π(Dc+νs)t], 21

for slip boundary conditions in two dimensions. The VACF has a t-1 tail, meaning that the diffusion coefficient Dc diverges logarithmically with time. The long time tail can be expected to appear on the kinematic time scale tν=σc2/νs, that is the time required by the kinematic viscosity νs to diffuse over the colloid radius. We validate the slip coupling method introduced in Sect. 2.2.2 between solvent and passive colloids by testing these predictions.

Since the kinematic viscosity (9) depends only very weakly on ns, for large values of ns, and given that

Cu(0)=kBTmc, 22

from equipartition, the long-time tails should all scale onto the same curve if time is rescaled by tν.

Figure 1 shows the VACF for three different values of ns and kBT=0.1. As shown in panel (a), for short times, the autocorrelation function shows clear exponential decay, while at late times (panels (b)-(c)) simulations show a long time tail t-1. When plotted as functions of the reduced time t/tν, all the data collapse onto the same curve (panel (c)). The oscillations visible in panels (b) and (c) for long times originate from sound modes and are a consequence of the finite compressibility of the MPC fluid combined with the periodic boundary conditions [70]. We checked that this effect decreases increasing the simulation box size.

Fig. 1.

Fig. 1

VACF for different values of the number of solvent particles per cell ns. Panels (ac) show the VACF for three different values of ns, namely ns=20 (blue curves) ns=10 (purple curves), and ns=5 (orange curves). For short times (a), the autocorrelation function shows a clear exponential decay, which overlaps well with the theoretical predictions of the the Enskog time, tE, shown as a dashed line for each case. At late times (b) simulations show a long time tail t-1 (grey dashed lines in panels (b) and (c), and dotted purple line in panel (a)). All the data collapse to the same curve if time is rescaled by tν (c)

The Enskog friction coefficient (19) slightly varies with ns; in order to test the sensibility of the implementation used we fixed ns=10

and varied the temperature to change the Enskog friction coefficient. Figure 2a shows the early time exponential decay of the VACF for the values kBT=0.05,0.1. The measured values of tE are in good agreement with the theoretical predictions. Also in this case the long-time tail has the expected t-1 slope (panel (b)), and all the curves collapse if time is rescaled by t/tν (panel (c)).

Fig. 2.

Fig. 2

VACF for different values of the temperature kBT. Panels (ac) show the VACF for the values kBT=0.05 (red curves) and kBT=0.1 (yellow curves), for the same number of solvent particles per cell ns=10. For short times (a), the autocorrelation function shows a clear exponential decay, which overlaps well with the theoretical prediction of the Enskog time tE shown as dashed line for each case. At late times (b) simulations show a long time tail t-1 (dotted line in panel (b)). All the data collapse to the same curve if time is rescaled by tν (c). d Time evolution, in semi-logarithmic scale, of the diffusion coefficient computed from the integral of the VACF, for the same parameters of the yellow curves of panel (a). The dotted line has the slope kBT8πρsνs

Using the Green-Kubo relation and Eq. (21), the diffusion coefficient can be approximated at long times, assuming that Dcνs and that the Enskog and hydrodynamic contributions to the VACF can be separated, as

Dc(t)=0t<u(t)u(0)>dttνtkBT8πρsνstdtkBT8πρsνs[lnt]tνt. 23

Figure 2d shows the temporal evolution of the diffusion coefficient computed from the VACF. On the time scales of the simulation, we observe a behavior consistent with Dcln(t), as expected from the t-1 tail of the VACF.

Hydrodynamic and variable mass effects on hexatic liquid transition

In this Section, we discuss the effects of changing the particles mass for the 2D ABP model and the role of hydrodynamics in the AHP model, using the numerical framework illustrated in the previous Section. In particular, we will focus onto characterizing the presence and location of the liquid-hexatic transition, by varying the system density in a region of the phase diagram at intermediate active forces where MIPS does not occur for over-damped ABP. The latter undergo the transition at ϕc=0.795 for Pe=10 and at ϕc=0.83 for Pe=20 [71].

The transition can be characterized by measuring the hexatic order parameter, ψ6(ri)=1Nij=1Niei6θij, with Ni the number of nearest Voronoi neighbours for particle i, and θij the angle formed between the segment connecting particles i and j and the x-axis. From ψ6(ri) we can compute the hexatic correlation function, defined as:

g6(r)=ψ6(ri)ψ6(rj)ψ62(ri), 24

where r=|ri-rj|. The transition between hexatic and liquid phases can be observed by the change in the functional dependence of g6(r) from exponential decay for short-range order, g6(r)e-r/lc, where lc is the correlation length, to algebraic for quasi-long-range order, g6(r)r-β. We use henceforth this criteria to distinguish between the liquid and the hexatic phase in our system. In Sect. 3.2.2 we also discuss from a dynamical perspective how macroscopic flow properties emerge when hydrodynamics is considered.

Effects of different colloids mass in the ABP model

Here we characterize the evolution of ABP following the model described in Sect 2.1 at Pe=5,10,20 and compare the results with the ones obtained in Ref. [71]. In particular, while in Ref. [71] only the value mc=1 was considered, here we will study the system with various masses ranging from mc=5to50. Thus, the main difference is that here we are increasing the inertial time tI=mc/γ, ranging from tI=0.5to5 while maintaining the persistence time tp=1/Dθ67  [1] constant, so that 7×10-3<pn<7×10-2. The use of large masses will allow a direct comparison with the AHP model (where mc=44) that will be used in the following.

We will focus on measuring approximately the value of the critical density ϕc where the liquid-hexatic transition occurs, computing the hexatic correlation at a fixed Pe within intervals of ϕ ranging from 0.05 to 0.1.

Figure 3a–c show typical configurations at Pe=10, mc=44 and three different densities. Configurations are colored according to the local hexatic parameter ψ6,j, projected onto its average value. In panel (a) (ϕ=0.71) we do not observe the appearance of any macroscopic hexatic domain, while in panel c (ϕ=0.76) we observe a fully hexatically ordered system. Panel (b), with ϕ=0.73, is an intermediate density where macroscopic and orientationally ordered domains emerge, suggesting that this density is close to the transition point.

Fig. 3.

Fig. 3

Hexatic order parameter color map in the ABP model. ac Color maps of the projection of the local hexatic order parameter of each particle, ψ6,j, onto the direction of the system’s global average, Ψ=1/Njψ6,j, at fixed Pe=10 and mc=44 for ϕ=0.710,0.730,0.760 respectively, for a system of size L=256σc

In order to locate the liquid-hexatic transition point at a fixed activity, we resort to study the hexatic correlation functions, finding the density at which these functions change from exponential to algebraic decay. Figure 4 shows these functions for mc=44 and Pe=10,20. At densities below ϕ=0.72 for Pe=10 and ϕ=0.74 for Pe=20, we find that the correlations have an exponential decay, while for larger values the behaviours that best fits the decay is that of an algebraic function. Thus, we find that at both activities considered the values where the liquid-hexatic transition occurs are lowered with respect to the ones at mc=1 reported in Ref. [28], suggesting that the increase in mass enhances the orientational ordering at fixed activity. In particular, we estimate ϕc=0.730±0.01 and 0.760±0.01 for Pe=10,20, respectively.

Fig. 4.

Fig. 4

Hexatic order correlation functions for the ABP model. Hexatic order correlation functions g6(r) for mc=44 at Pe=10 (left) and Pe=20 (right) for different global packing fractions given in the keys

We also checked that this ordering effect occurs while fixing the system density and activity, and increasing the colloids mass. The correlation functions in Fig. 5, left side, at Pe=10 and ϕ=0.74, show that by increasing the mass the system crosses from a liquid state to a hexatic one. We summarize these measurements in the right panel of Fig. 5, where we show the location of the critical density for different Pe and different mc. It is evident that the critical density of the liquid-hexatic transition continuously decreases increasing the value of the mass for the different Pe considered. Interestingly, the data fit with the function ϕc(mc)=a+be-mc/c, with coefficients reported in the caption.

Fig. 5.

Fig. 5

Effects of colloids mass on the Liquid-Hexatic transition. On the left panel, orientational correlation functions, g6(r), at fixed Pe=10 and ϕ=0.74 for different values of the mass of the particles given in the keys. On the right panel, the liquid-Hexatic critical density, ϕc, at fixed Pe=10, as a function of the mass of the colloids mc. The solid line is a fit of the data using the function ϕc(mc)=a+be-mc/c, with parameters a=0.71,b=0.05,c=10.37 for Pe=5; a=0.72,b=0.08,c=12.92 for Pe=10; and a=0.76,b=0.08,c=14.30 for Pe=20. The error bars correspond to the gap Δϕ between the densities scanned in the simulations for each value of the mass mc

To summarize, the results showed here point out that an enlarged mass, and therefore an increase in the inertial time tI, has an effect of enhancing the orientational ordering of the system. It is important to note that this is a non-equilibrium effect not present in the passive system. Indeed, we checked (not shown) that in the absence of activity the transition density value is independent of the mass value. We also observed that the asymptotic values for large mc (coefficient a in the fitting function) are close to the transition density at Pe=0 [71]. When the persistence number is pn10-2 (mc10), the system behaves closer to the passive case. On the other hand, when pn10-2 the active force has a disordering effect in the hexatic ordering.

Hydrodynamics effects

We now turn our attention to the role of hydrodynamics by studying the AHP model. To do so, we employ the hybrid mesoscopic approach presented and tested in Sect. 2, where the MPC solvent is coupled with the active colloids to account for hydrodynamic interactions. It is important to stress that in our numerical model no tangential flow velocity is imposed to colloids (they are not squirmers), thus the resulting velocity field is the result of collisions between moving colloids and fluid particles. In Fig. 6 we show the velocity field of our active colloid immersed in a fluid. The flow field strongly resembles that of a neutral swimmer.

Fig. 6.

Fig. 6

Velocity field induced by an active colloid in the AHP model. Fluid velocity field around an active colloid for Pe=20, in the lab frame (a) and in the colloid frame (b). The black arrow indicates the direction of the active force

The parameters of AHP, chosen in order to fulfil the constraints discussed in Sect. 2.2.3, fix the colloid mass to mc=44 and γ=10. In this way, the AHP simulation results can be directly compared with the ones of ABP with the same mc. We will scan values of ϕ between 0.5 and 0.85.

Liquid-hexatic transition

We start by looking at how the ordering properties are affected by hydrodynamics. Figure 7a–c show, for three different densities at Pe=10, the color map of the local hexatic parameter ψ6,j projected onto its average value. In panel (a) (ϕ=0.78) we do not observe the appearance of macroscopic hexatic domains, but locally we still observe small orientationally ordered regions. These regions appear to become larger upon increasing the density (panel (b), ϕ=0.8), although global ordering is not observed. At ϕ=0.81, panel (c), a single fully hexatically ordered system is observed. Thus, also AHP present a transition between liquid and hexatic phases.

Fig. 7.

Fig. 7

Hexatic order parameter color map in the AHP model. ac Color maps of the local hexatic order parameter, ψ6,j, as reported in Fig. 3, for Pe=10 and mc=44, with ϕ=0.78,0.8,0.81 from left to right, for a system of size L=128σc

Figure 8 shows the hexatic correlation functions varying the density for Pe=10,20, to be compared with the results presented in Fig. 4 for the ABP system. For both values of activity, we find that the hexatic order correlation function shifts from an exponential decay to a power-law decay at substantially higher values of packing fraction ϕ. More precisely the transition is located at ϕc0.805±0.01 for Pe=10, and ϕc0.840±0.01 for Pe=20.

Fig. 8.

Fig. 8

Hexatic order correlation function for the AHP model. ab Hexatic order correlation function g6(r) at Pe=10 (d) and Pe=20 (e) for different global packing fractions given in the keys and mc=44

The increase in value of the transition density ϕc with respect to the ABP model suggests that the addition of hydrodynamic interactions has a disordering net effect regarding the global orientational order. This is opposite to the effect of increasing the particles mass, which instead promotes hexatic ordering. Indeed, if we measure the average global hexatic parameter ψ6=1N|iNψ6,i| as a function of the global packing fraction ϕ (Fig. 9 ), which increases from 0 to 1 as the liquid-hexatic transition is crossed, we find that the transition is significantly shifted. Note that both curves converge to almost the same value for very high densities, suggesting that for densely packed systems hydrodynamic does not disrupt the ordering properties of colloids.

Fig. 9.

Fig. 9

Liquid-Hexatic transition in the ABP and AHP model. Global hexatic parameter as a function of the global packing fraction for Pe=10 and mc=44,. The orange and blue curves correspond to simulations with and without hydrodynamics, respectively, for active colloids with the same mass

We also checked (not shown) that in the absence of activity, the transition density values that limit the coexistence region of the liquid-hexatic transition of passive colloids [8] are not affected by the presence of hydrodynamic interactions. However, hydrodynamics produces other relevant effects which will be now discussed.

Self sustained motion at high density

We now want to better understand the behavior and the role of the fluid velocity field, which for AHP can be locally organized, while the ABP model has no such feature, and rely only on hard-core repulsion. Thus, we will have a deeper look into the velocity field of AHP, and if it can trigger a coherent motion of small clusters of particles.

Figure 10 shows the coarse-grained steady state velocity fields of the fluid, v(r) (panels d-f) along with associated snapshots of the configurations colored according to the hexatic parameter (panels a-c), for AHP with Pe=10 and three different values of packing fraction ϕ. Coarse-grained velocity fields of the fluid are realized by averaging the velocity of fluid particles inside blocks of size 4σc=20σs (such large coarse-graining cells are chosen for the sake of visualization; similar profiles can be obtained with smaller cells). The first density, ϕ=0.60 (panels (a), (d)), is characterized by the absence of orientational order. At the same time, however, its corresponding velocity field presents the formation of vortexes along with regions where flow is both not correlated and lower in magnitude. The associated velocity field for the active colloids (not shown) has a matching profile, while the local average direction of the active force is random, and thus not coherent with the velocity field.

Fig. 10.

Fig. 10

Self-sustained active flow. ac Color maps of the local hexatic order parameter for Pe=10 and ϕ=0.60,0.80,0.86, respectively. Panels df show the corresponding steady state fluid velocity field. The color code is the same as the one in Fig. 3

Figure 10b, e show instead a larger density ϕ=0.80. We observe, here, a case close to the hexatic transition point, with locally formed fluctuating hexatic domains with their typical size remaining stationary over time. Along with these clusters, the flow becomes more coherent than at ϕ=0.60, with fluid and colloids having again a similar velocity field. Again, we do not observe a local average direction of the active force coherent with the flow field. The same behaviour becomes even more pronounced upon increasing the density (ϕ=0.860 panels (c) and (f)), where the system is fully orientationally ordered. In this case, the associated flow field becomes an unidirected self-sustained flow, with particles moving typically along the same direction, and with the global direction of the flow slowly changing over time. Interestingly, this behaviour is similar to travelling bands occurring in Vicsek-like models [72, 73], where an additional alignment interaction of active force directions is introduced, which allows particles to move coherently. Velocity correlations between particles have also been found in systems of ABP with different persistence times [7477], flowing crystals made of spontaneously aligning self-propelled hard disks [78] and self-sustained spontaneous flows in active gels [7983].

We do not have at the moment a full theoretical understanding of the emergence of the coherent motion, which occurs even when there is no orientational ordering. We can only try to interpret the phenomenology in the following way: the self-propulsion force of colloids continuously injects energy into the fluid, setting it into motion. Fluid particles can later self-organize their motion in a coherent form, and drag colloids along their direction of motion, which is not necessarily the same direction of the active force of each particle.

A quantitative measure of this transition to unidirected self-sustained flow, as a synergetic effect of self-propulsion and hydrodynamic interactions, can be obtained by measuring the spatial velocity correlation function for the fluid velocity:

Cv(r)=v(r)v(0)v(0)2. 25

Figure 11 shows Cv(r) for different values of ϕ, for Pe=10. For low values of ϕ (see e.g. ϕ=0.600) the curve shows an exponential decay. This corresponds to the case shown in Fig. 10d, characterized by the presence of isolated vortexes. When we increase the density, we observe that the velocity correlation has a slower decay, or a longer correlation length. Above density ϕ0.730, the correlation becomes almost constant. We note that the transition in the velocity correlations between exponential and algebraic decay does not manifest itself at the liquid-hexatic transition, since the latter appears at higher values of ϕ. In the inset of Fig. 11 the velocity correlation function for ABP in the hexatic phase (Pe=10 and ϕ=0.760) is also shown for comparison. It shortly decays to zero, while for AHP, even in the liquid case (yellow curve), the decay is much slower. To gain more insights on the effects of hydrodynamic interactions we report the radial distribution function g(r) in Fig. 12, for ϕ=0.750 both for ABP and AHP at Pe=10. We observe that the presence of fluid in AHP does not considerably change the position of the peaks in the radial distribution function. However, we notice that the intensity of the peaks is enhanced in the ABP case, meaning that the fluid interferes with ordering, thus shifting the hexatic transition to higher densities.

Fig. 11.

Fig. 11

Spatial velocity correlations. Spatial velocity correlation functions Cv(r), for different values of ϕ, for Pe=10. In the inset the velocity correlation function of ABP at Pe=10 and ϕ=0.760 is compared with ϕ=0.60 for AHP at the same Pe

Fig. 12.

Fig. 12

Radial distribution function. Radial distribution function for ABP and AHP models with ϕ=0.750 at Pe=10

As a last check, we switched off/on hydrodynamics by just removing/adding the solvent particles and adding/removing the Langevin friction and noise terms in the colloids equation of motion (3). This enables us to check if a stationary AHP configuration is naturally able to relax to a stationary conformation of the ABP when hydrodynamics is switched off. We choose Pe=10 and ϕ=0.795, a density where the system is hexatically disordered/ordered with/without hydrodynamics. The results are shown in Fig. 13. We start with AHP in a fully ordered configuration; after an equilibration time of 104 simulation time units, the system forms fluctuating ordered domains which change over time but do not grow in size (panel (a)). We then turn off hydrodynamics, and the system gradually sets after t=105 simulation time units to an almost fully hexatically ordered conformation (panel (b)). The corresponding colloids velocity field is shown in panels (c)-(d). Note that the configuration is still not fully ordered only due to the large time required to relax to the fully ordered state; however we observe that the global hexatic parameter is steadily growing over time. Switching on hydrodynamics again the system returns to the configuration shown in Fig. 13a.

Fig. 13.

Fig. 13

Switch between ABP and AHP model. ab Snapshots of the system at different times t=104,105 of the local hexatic order parameter, at Pe=10 and ϕ=0.795, before (panel (a)) and after (panel (b)) switching off hydrodynamics. The corresponding colloids velocity fields are shown in panels (cd)

Conclusions

We have studied with extensive simulations the role of particles mass and hydrodynamics in active colloids, and showed how they affect the liquid-hexatic transition in an intermediate activity regime in which MIPS does not occur yet (Pe=10,20).

We have first characterized the ABP by changing their mass, while maintaining the same Pe and Dθ, so that we have a non-trivial interplay between the inertial time and the persistence time tp=1/Dθ. We showed that the critical density of the transition is shifted to a lower density upon increasing the colloid mass. This critical density is close to the one found at Pe=0, suggesting that inertia has an orientational ordering effect on the system, bringing the system closer to equilibrium behaviour and counteracting the disordering role of self-propulsion.

When hydrodynamic interactions are taken into account, we found instead that the liquid-hexatic transition moves towards higher values of packing fraction ϕ, thus suggesting that hydrodynamics has a net effect of orientationally disordering the system. We also analyzed the fluid velocity field of AHP, and found at Pe=10 two results: i) the formation below ϕ0.72 of small regions of correlated velocity field, characterized by the presence of vortices, that are not associated to any local orientational ordering; ii) the arisal above ϕ0.720 of a self sustained motion, with the fluid particles moving in one direction. This change in behavior has been characterized by measuring the spatial velocity correlation which changes from an exponential to an algebraic decay.

Regarding the role of inertia, it will be interesting in the future to reconstruct a phase diagram similar to the one of Ref. [8], by characterizing in more detail the hexatic phase and the location of the solid phase. Regarding AHP, instead, it will be necessary to better describe the physical mechanisms producing the vortices at smaller densities and the transition to a self-sustained motion at larger densities. It remains an open question whether such a scenario is still encountered in quasi 2D and 3D geometries as well as in experiments with wet active colloids. It would also be of interest to investigate the effect of no-slip boundary conditions, which would completely determine the colloid angular diffusion and could induce additional cooperative effects, the effects of changing colloidal mass, and to study in more details particle-particle flow interactions and local velocity field effects. We hope that our results can boost further research in this direction.

Acknowledgements

This work was possible thank to the access to Bari ReCaS e-Infrastructure funded by MIUR through PON Research and Competitiveness 2007–2013 Call 254 Action I and MARCONI at CINECA (Project INF22-fieldturb) under CINECA-INFN agreement. We acknowledge funding from MIUR Project No. PRIN 2020/PFCXPE.

Author contribution statement

All authors contributed equally to conceptualizing the research, analysing the results and writing the paper. GN and CBC carried out the simulations.

Funding

Open access funding provided by Università degli Studi di Bari Aldo Moro within the CRUI-CARE Agreement.

Data Availability statement

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

References

  • 1.Fily Y, Marchetti MC. Athermal phase separation of self-propelled particles with no alignment. Phys. Rev. Lett. 2012;108:235702. doi: 10.1103/PhysRevLett.108.235702. [DOI] [PubMed] [Google Scholar]
  • 2.P. Romanczuk, M. Bär, W. Ebeling, B. Lindner, L. Schimansky-Geier. Active brownian particles. from individual to collective stochastic dynamics. Eur. Phys. J. Spec. Top., 202:1–162, (2012)
  • 3.Bialké J, Speck T, Löwen H. Crystallization in a dense suspension of self-propelled particles. Phys. Rev. Lett. 2012;108:168301. doi: 10.1103/PhysRevLett.108.168301. [DOI] [PubMed] [Google Scholar]
  • 4.Bechinger C, Di Leonardo R, Löwen H, Reichhardt C, Volpe G, Volpe G. Active particles in complex and crowded environments. Rev. Mod. Phys. 2016;88:045006. doi: 10.1103/RevModPhys.88.045006. [DOI] [Google Scholar]
  • 5.Bialek W, Cavagna A, Giardina I, Mora T, Silvestri E, Viale M, Walczak AM. Statistical mechanics for natural flocks of birds. Proc. Natl. Acad. Sci. 2012;109(13):4786–4791. doi: 10.1073/pnas.1118633109. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Be’er AG. A statistical physics view of swarming bacteria. Mov. Ecol. 2019;7:556. doi: 10.1186/s40462-019-0153-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Needleman D, Dogic Z. Active matter at the interface between materials science and cell biology. Nat. Rev. Mater. 2017;2:58. doi: 10.1038/natrevmats.2017.48. [DOI] [Google Scholar]
  • 8.P. Digregorio, D., A. Suma, L.F. Cugliandolo, G. Gonnella, I. Pagonabarraga. Full phase diagram of active brownian disks: From melting to motility-induced phase separation. Phys. Rev. Lett., 121: 098003, (2018) [DOI] [PubMed]
  • 9.Caporusso CB, Digregorio P, Levis D, Cugliandolo LF, Gonnella G. Motility-induced microphase and macrophase separation in a two-dimensional active brownian particle system. Phys. Rev. Lett. 2020;125:178004. doi: 10.1103/PhysRevLett.125.178004. [DOI] [PubMed] [Google Scholar]
  • 10.Cates ME, Tailleur J. Motility-induced phase separation. Ann. Rev. Condensed Matter Phys. 2015;6(1):219–244. doi: 10.1146/annurev-conmatphys-031214-014710. [DOI] [Google Scholar]
  • 11.Gonnella G, Marenduzzo D, Suma A, Tiribocchi A. Motility-induced phase separation and coarsening in active matter. C R Phys. 2015;16(3):316–331. doi: 10.1016/j.crhy.2015.05.001. [DOI] [Google Scholar]
  • 12.Redner GS, Hagan MF, Baskaran A. Structure and dynamics of a phase-separating active colloidal fluid. Phys. Rev. Lett. 2013;110:055701. doi: 10.1103/PhysRevLett.110.055701. [DOI] [PubMed] [Google Scholar]
  • 13.Buttinoni I, Bialké J, Kümmel F, Löwen H, Bechinger C, Speck T. Dynamical clustering and phase separation in suspensions of self-propelled colloidal particles. Phys. Rev. Lett. 2013;110:238301. doi: 10.1103/PhysRevLett.110.238301. [DOI] [PubMed] [Google Scholar]
  • 14.Ginot F, Theurkauff I, Levis D, Ybert C, Bocquet L, Berthier L, Cottin-Bizonne C. Nonequilibrium equation of state in suspensions of active colloids. Phys. Rev. X. 2015;5:011004. [Google Scholar]
  • 15.Rubenstein M, Cornejo A, Nagpal R. Programmable self-assembly in a thousand-robot swarm. Science. 2014;345(6198):795–799. doi: 10.1126/science.1254295. [DOI] [PubMed] [Google Scholar]
  • 16.Chvykov P, Berrueta TA, Vardhan A, Savoie W, Samland A, Murphey TD, Wiesenfeld K, Goldman DI, England JL. Low rattling: a predictive principle for self-organization in active collectives. Science. 2021;371(6524):90–95. doi: 10.1126/science.abc6182. [DOI] [PubMed] [Google Scholar]
  • 17.Li S, Batra R, Brown D, Chang H, Ranganathan N, Hoberman C, Rus D, Lipson H. Particle robotics based on statistical mechanics of loosely coupled components. Nature. 2019;567(7748):361–365. doi: 10.1038/s41586-019-1022-9. [DOI] [PubMed] [Google Scholar]
  • 18.Kapral R. Perspective: Nanomotors without moving parts that propel themselves in solution. J. Chem. Phys. 2013;138(2):020901. doi: 10.1063/1.4773981. [DOI] [PubMed] [Google Scholar]
  • 19.Katz Y, Tunstrøm K, Ioannou CC, Huepe C, Couzin ID. Inferring the structure and dynamics of interactions in schooling fish. Proc. Natl. Acad. Sci. 2011;108(46):18720–18725. doi: 10.1073/pnas.1107583108. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.A. Celani K. Gustavsson, L. Biferale, S. Colabrese. Finding efficient swimming strategies in a three-dimensional chaotic flow by reinforcement learning. Eur. Phys. J. E, 40(110), (2017) [DOI] [PubMed]
  • 21.Doostmohammadi A, Yeomans JM. Coherent motion of dense active matter. Eur. Phys. J. Spec. Top. 2019;227:2401–2411. doi: 10.1140/epjst/e2019-700109-x. [DOI] [Google Scholar]
  • 22.Tjhung E, Berthier L. Analogies between growing dense active matter and soft driven glasses. Phys. Rev. Res. 2020;2:043334. doi: 10.1103/PhysRevResearch.2.043334. [DOI] [Google Scholar]
  • 23.Mandal R, Bhuyan PJ, Chaudhuri P, Dasgupta C, Rao M. Extreme active matter at high densities. Nat. Commun. 2020;11:889. doi: 10.1038/s41467-020-16130-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Henkes S, Kostanjevec K, Collinson JM, Sknepnek R, Bertin E. Dense active matter model of motion patterns in confluent cell monolayers. Nat. Commun. 2020;11:71. doi: 10.1038/s41467-020-15164-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Bi D, Yang X, Marchetti MC, Manning ML. Motility-driven glass and jamming transitions in biological tissues. Phys. Rev. X. 2016;6:021011. doi: 10.1103/PhysRevX.6.021011. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Yan J, Han M, Zhang J, Xu C, Luijten E, Granick S. Reconfiguring active particles by electrostatic imbalance. Nat. Mater. 2016;15:1095–1099. doi: 10.1038/nmat4696. [DOI] [PubMed] [Google Scholar]
  • 27.Klamser JU, Kapfer SC, Krauth W. Thermodynamic phases in two-dimensional active matter. Nat. Commun. 2018;9:12. doi: 10.1038/s41467-018-07491-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Digregorio P, Levis D, Cugliandolo LF, Gonnella G, Pagonabarraga I. Unified analysis of topological defects in 2D systems of active and passive disks. Soft Matter. 2022;18:566–591. doi: 10.1039/D1SM01411K. [DOI] [PubMed] [Google Scholar]
  • 29.Bernard EP, Krauth W. Two-step melting in two dimensions: first-order liquid-hexatic transition. Phys. Rev. Lett. 2011;107:155704. doi: 10.1103/PhysRevLett.107.155704. [DOI] [PubMed] [Google Scholar]
  • 30.Kapfer SC, Krauth W. Two-dimensional melting: from liquid-hexatic coexistence to continuous transitions. Phys. Rev. Lett. 2015;114:035702. doi: 10.1103/PhysRevLett.114.035702. [DOI] [PubMed] [Google Scholar]
  • 31.A.L. Thorneywork, J.L. Abbott, Dirk G. A. L. D.G.A.L. Aarts, R.P.A. Dullens. Two-dimensional melting of colloidal hard spheres. Phys. Rev. Lett., 118:158001, (2017) [DOI] [PubMed]
  • 32.Kosterlitz JM, Thouless DJ. Ordering, metastability and phase transitions in two-dimensional systems. J. Phys. C Solid State Phys. 1973;6(7):1181–1203. doi: 10.1088/0022-3719/6/7/010. [DOI] [PubMed] [Google Scholar]
  • 33.Halperin BI, Nelson DR. Theory of two-dimensional melting. Phys. Rev. Lett. 1978;41:121–124. doi: 10.1103/PhysRevLett.41.121. [DOI] [Google Scholar]
  • 34.Young AP. Melting and the vector coulomb gas in two dimensions. Phys. Rev. B. 1979;19:1855–1866. doi: 10.1103/PhysRevB.19.1855. [DOI] [Google Scholar]
  • 35.Nie P, Chattoraj J, Piscitelli A, Doyle P, Ni R, Ciamarra MP. Stability phase diagram of active brownian particles. Phys. Rev. Res. 2020;2:023010. doi: 10.1103/PhysRevResearch.2.023010. [DOI] [PubMed] [Google Scholar]
  • 36.Caprini L, Marconi UMB. Inertial self-propelled particles. J. Chem. Phys. 2021;154(2):024902. doi: 10.1063/5.0030940. [DOI] [PubMed] [Google Scholar]
  • 37.A.K. Omar, K. Klymko, T. GrandPre, P.L. Geissler, J.F. Brady. Tuning nonequilibrium phase transitions with inertia. arXiv:2108.10278, (2021) [DOI] [PubMed]
  • 38.Petrelli I, Cugliandolo LF, Gonnella G, Suma A. Effective temperatures in inhomogeneous passive and active bidimensional brownian particle systems. Phys. Rev. E. 2020;102:012609. doi: 10.1103/PhysRevE.102.012609. [DOI] [PubMed] [Google Scholar]
  • 39.Löwen H. Inertial effects of self-propelled particles: From active brownian to active langevin motion. J. Chem. Phys. 2020;152(4):040901. doi: 10.1063/1.5134455. [DOI] [PubMed] [Google Scholar]
  • 40.Theers M, Westphal E, Qi K, Winkler RG, Gompper G. Clustering of microswimmers: interplay of shape and hydrodynamics. Soft Matter. 2018;14:8590–8603. doi: 10.1039/C8SM01390J. [DOI] [PubMed] [Google Scholar]
  • 41.Matas-Navarro R, Golestanian R, Liverpool TB, Fielding SM. Hydrodynamic suppression of phase separation in active suspensions. Phys. Rev. E. 2014;90:032304. doi: 10.1103/PhysRevE.90.032304. [DOI] [PubMed] [Google Scholar]
  • 42.Gompper G, Winkler RG, Speck T, Solon A, Nardini C, Peruani F, Löwen H, Golestanian R, Kaupp UB, Alvarez L, Kiørboe T, Lauga E, Poon WCK, DeSimone A, Muiños-Landin S, Fischer A, Söker NA, Cichos F, Kapral R, Gaspard P, Ripoll M, Sagues F, Doostmohammadi A, Yeomans JM, Aranson IS, Bechinger C, Stark H, Hemelrijk CK, Nedelec FJ, Sarkar T, Aryaksama T, Lacroix M, Duclos G, Yashunsky V, Silberzan P, Arroyo M, Kale S. The 2020 motile active matter roadmap. J. Phys. Condens. Matter. 2020;32(19):193001. doi: 10.1088/1361-648X/ab6348. [DOI] [PubMed] [Google Scholar]
  • 43.Zöttl A, Stark H. Hydrodynamics determines collective motion and phase behavior of active colloids in quasi-two-dimensional confinement. Phys. Rev. Lett. 2014;112:118101. doi: 10.1103/PhysRevLett.112.118101. [DOI] [PubMed] [Google Scholar]
  • 44.M. Theers, E. Westphal, K. Qi, R.G. Winkler, G. Gompper”. Clustering of microswimmers: interplay of shape and hydrodynamics. Soft Matter 14, 8590–8603 (2018) [DOI] [PubMed]
  • 45.Malevanets A, Kapral R. Mesoscopic model for solvent dynamics. J. Chem. Phys. 1999;110(17):8605–8613. doi: 10.1063/1.478857. [DOI] [Google Scholar]
  • 46.G. Gompper, T. Ihle, D.M. Kroll, R.G. Winkler. Multi-Particle Collision Dynamics: A Particle-Based Mesoscale Simulation Approach to the Hydrodynamics of Complex Fluids, pp. 1–87. Springer Berlin Heidelberg, Berlin, Heidelberg, (2009)
  • 47.Bolintineanu DS, Grest GS, Lechman JB, Pierce F, Plimpton SJ, Schunk PR. Particle dynamics modeling methods for colloid suspensions. Comput. Particle Mech. 2014;1(3):321–356. doi: 10.1007/s40571-014-0007-6. [DOI] [Google Scholar]
  • 48.Suma A, Gonnella G, Laghezza G, Lamura A, Mossa A, Cugliandolo LF. Dynamics of a homogeneous active dumbbell system. Phys. Rev. E. 2014;90:052130052130. doi: 10.1103/PhysRevE.90.052130. [DOI] [PubMed] [Google Scholar]
  • 49.Plimpton S. Fast parallel algorithms for short-range molecular dynamics. J. Comput. Phys. 1995;117(1):1–19. doi: 10.1006/jcph.1995.1039. [DOI] [Google Scholar]
  • 50.Malevanets A, Kapral R. Solute molecular dynamics in a mesoscale solvent. J. Chem. Phys. 2000;112(16):7260–7269. doi: 10.1063/1.481289. [DOI] [Google Scholar]
  • 51.Kikuchi N, Pooley CM, Ryder JF, Yeomans JM. Transport coefficients of a mesoscopic fluid dynamics model. J. Chem. Phys. 2003;119(12):6388–6395. doi: 10.1063/1.1603721. [DOI] [Google Scholar]
  • 52.Ihle T, Tüzel E, Kroll DM. Resummed green-kubo relations for a fluctuating fluid-particle model. Phys. Rev. E. 2004;70:035701. doi: 10.1103/PhysRevE.70.035701. [DOI] [PubMed] [Google Scholar]
  • 53.Tüzel E, Ihle T, Kroll DM. Dynamic correlations in stochastic rotation dynamics. Phys. Rev. E. 2006;74:056702056702. doi: 10.1103/PhysRevE.74.056702. [DOI] [PubMed] [Google Scholar]
  • 54.Bocquet L, Barrat J. Hydrodynamic boundary conditions, correlation functions, and kubo relations for confined fluids. Phys. Rev. E. 1994;49:3079–3092. doi: 10.1103/PhysRevE.49.3079. [DOI] [PubMed] [Google Scholar]
  • 55.Inoue Y, Chen Y, Ohashi H. Development of a simulation model for solid objects suspended in a fluctuating fluid. J. Stat. Phys. 2002;107(1):85–100. doi: 10.1023/A:1014550318814. [DOI] [Google Scholar]
  • 56.Lamura A, Gompper G, Ihle T, Kroll DM. Multi-particle collision dynamics: flow around a circular and a square cylinder. Europhys. Lett. (EPL) 2001;56(3):319–325. doi: 10.1209/epl/i2001-00522-9. [DOI] [Google Scholar]
  • 57.Padding JT, Wysocki A, Löwen H, Louis AA. Stick boundary conditions and rotational velocity auto-correlation functions for colloidal particles in a coarse-grained representation of the solvent. J. Phys. Condens. Matter. 2005;17(45):S3393–S3399. doi: 10.1088/0953-8984/17/45/027. [DOI] [Google Scholar]
  • 58.Padding JT, Louis AA. Hydrodynamic interactions and brownian forces in colloidal suspensions: coarse-graining over time and length scales. Phys. Rev. E. 2006;74:031402. doi: 10.1103/PhysRevE.74.031402. [DOI] [PubMed] [Google Scholar]
  • 59.M. Hecht, J. Harting, T. Ihle, H.J. Herrmann, Simulation of claylike colloids. Phys. Rev. E 72, 011408 (2005) [DOI] [PubMed]
  • 60.Chien-Cheng H, Varghese A, Gompper G, Winkler RG. Thermostat for nonequilibrium multiparticle-collision-dynamics simulations. Phys. Rev. E. 2015;91:013310. doi: 10.1103/PhysRevE.91.013310. [DOI] [PubMed] [Google Scholar]
  • 61.Ripoll M, Mussawisade K, Winkler RG, Gompper G. Low-reynolds-number hydrodynamics of complex fluids by multi-particle-collision dynamics. Europhys. Lett. (EPL) 2004;68(1):106–112. doi: 10.1209/epl/i2003-10310-1. [DOI] [Google Scholar]
  • 62.Ripoll M, Mussawisade K, Winkler RG, Gompper G. Dynamic regimes of fluids simulated by multiparticle-collision dynamics. Phys. Rev. E. 2005;72:016701. doi: 10.1103/PhysRevE.72.016701. [DOI] [PubMed] [Google Scholar]
  • 63.Braun OM, Peyrard M. Friction in a solid lubricant film. Phys. Rev. E. 2001;63:046110. doi: 10.1103/PhysRevE.63.046110. [DOI] [PubMed] [Google Scholar]
  • 64.Liu B, Goree J, Vaulina OS. Test of the stokes-einstein relation in a two-dimensional yukawa liquid. Phys. Rev. Lett. 2006;96:015005. doi: 10.1103/PhysRevLett.96.015005. [DOI] [PubMed] [Google Scholar]
  • 65.Lamura A, Gompper G. Numerical study of the flow around a cylinder using multi-particle collision dynamics. Eur. Phys. J. E. 2002;9(5):477–485. doi: 10.1140/epje/i2002-10107-0. [DOI] [PubMed] [Google Scholar]
  • 66.E. Guyon, J.P. Hulin, L. Petit, C.D. Mitescu. Physical Hydrodynamics. Oxford University Press, (2015)
  • 67.Padding JT, Sané J, Louis AA. Hydrodynamics of confined colloidal fluids in two dimensions. Phys. Rev. E. 2009;79:051402. doi: 10.1103/PhysRevE.79.051402. [DOI] [PubMed] [Google Scholar]
  • 68.Alder BJ, Wainwright TE. Decay of the velocity autocorrelation function. Phys. Rev. A. 1970;1:18–21. doi: 10.1103/PhysRevA.1.18. [DOI] [Google Scholar]
  • 69.Ernst MH, Hauge EH, van Leeuwen JMJ. Asymptotic time behavior of correlation functions. Phys. Rev. Lett. 1970;25:1254–1256. doi: 10.1103/PhysRevLett.25.1254. [DOI] [Google Scholar]
  • 70.Huang C, Gompper G, Winkler RG. Hydrodynamic correlations in multiparticle collision dynamics fluids. Phys. Rev. E. 2012;86:056711. doi: 10.1103/PhysRevE.86.056711. [DOI] [PubMed] [Google Scholar]
  • 71.Cugliandolo LF, Digregorio P, Gonnella G, Suma A. Phase coexistence in two-dimensional passive and active dumbbell systems. Phys. Rev. Lett. 2017;119:268002. doi: 10.1103/PhysRevLett.119.268002. [DOI] [PubMed] [Google Scholar]
  • 72.V. Tamás, A. Zafeiris. Collective motion. Phys. Rep., 517(3):71–140, (2012). Collective motion
  • 73.Martín-Gómez A, Levis D, Díaz-Guilera A, Pagonabarraga I. Collective motion of active brownian particles with polar alignment. Soft Matter. 2018;14:2610–2618. doi: 10.1039/C8SM00020D. [DOI] [PubMed] [Google Scholar]
  • 74.Caprini L, Marconi UMB, Puglisi A. Spontaneous velocity alignment in motility-induced phase separation. Phys. Rev. Lett. 2020;124:078001. doi: 10.1103/PhysRevLett.124.078001. [DOI] [PubMed] [Google Scholar]
  • 75.Caprini L, Marconi UMB, Maggi C, Paoluzzi M, Puglisi A. Hidden velocity ordering in dense suspensions of self-propelled disks. Phys. Rev. Res. 2020;2:023321023321. doi: 10.1103/PhysRevResearch.2.023321. [DOI] [Google Scholar]
  • 76.Marconi UMB, Caprini L, Puglisi A. Hydrodynamics of simple active liquids: the emergence of velocity correlations. New J. Phys. 2021;23(10):103024. doi: 10.1088/1367-2630/ac2b54. [DOI] [Google Scholar]
  • 77.Caprini L, Marconi UMB. Spatial velocity correlations in inertial systems of active brownian particles. Soft Matter. 2021;17:4109–4121. doi: 10.1039/D0SM02273J. [DOI] [PubMed] [Google Scholar]
  • 78.Briand G, Schindler M, Dauchot O. Spontaneously flowing crystal of self-propelled particles. Phys. Rev. Lett. 2018;120:208001. doi: 10.1103/PhysRevLett.120.208001. [DOI] [PubMed] [Google Scholar]
  • 79.L.N. Carenza, G. Gonnella, A. Lamura, G. Negro, A. Tiribocchi, Lattice boltzmann methods and active fluids. Eur. Phys. J. E 42(6), 81 (2019) [DOI] [PubMed]
  • 80.Negro G, Carenza LN, Lamura A, Tiribocchi A, Gonnella G. Rheology of active polar emulsions: from linear to unidirectional and inviscid flow, and intermittent viscosity. Soft Matter. 2019;15:8251–8265. doi: 10.1039/C9SM01288E. [DOI] [PubMed] [Google Scholar]
  • 81.Giordano MG, Bonelli F, Carenza LN, Gonnella G, Negro G. Activity-induced isotropic-polar transition in active liquid crystals. EPL (Europhysics Letters) 2021;133(5):58004. doi: 10.1209/0295-5075/133/58004. [DOI] [Google Scholar]
  • 82.L.N. Carenza, G. Gonnella, A. Lamura, D. Marenduzzo, G. Negro, A. Tiribocchi, Soft channel formation and symmetry breaking in exotic active emulsions. Sci. Rep. 10(1), 15936 (2020) [DOI] [PMC free article] [PubMed]
  • 83.Negro G, Lamura A, Gonnella G, Marenduzzo D. Hydrodynamics of contraction-based motility in a compressible active fluid. EPL (Europhysics Letters) 2019;127(5):58001. doi: 10.1209/0295-5075/127/58001. [DOI] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.


Articles from The European Physical Journal. E, Soft Matter are provided here courtesy of Springer

RESOURCES