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. 2014 Nov 24;143(9):1803–1815. doi: 10.1017/S0950268814002660

Interpretations and pitfalls in modelling vector-transmitted infections

M AMAKU 1, F AZEVEDO 2, M N BURATTINI 2, F A B COUTINHO 2,*, L F LOPEZ 2,3, E MASSAD 2,4
PMCID: PMC9507249  PMID: 25417817

SUMMARY

In this paper we propose a debate on the role of mathematical models in evaluating control strategies for vector-borne infections. Mathematical models must have their complexity adjusted to their goals, and we have basically two classes of models. At one extreme we have models that are intended to check if our intuition about why a certain phenomenon occurs is correct. At the other extreme, we have models whose goals are to predict future outcomes. These models are necessarily very complex. There are models in between these classes. Here we examine two models, one of each class and study the possible pitfalls that may be incurred. We begin by showing how to simplify the description of a complicated model for a vector-borne infection. Next, we examine one example found in a recent paper that illustrates the dangers of basing control strategies on models without considering their limitations. The model in this paper is of the second class. Following this, we review an interesting paper (a model of the first class) that contains some biological assumptions that are inappropriate for dengue but may apply to other vector-borne infections. In conclusion, we list some misgivings about modelling presented in this paper for debate.

Key words: Dengue, mathematical modelling, vector-borne infections

INTRODUCTION

The purpose of this paper is to examine the role of mathematical models in evaluating control strategies for diseases, illuminating their limitations and possible errors that can occur if these limitations are not carefully considered.

For diseases involving vectors, the number of variables can be large and it is sometimes unnecessary and misleading to use all the complexities of the real biological system.

As noted by Mazilu et al. [1], this is far from a trivial matter: ‘Building simple models that capture the essence of a physical phenomenon is not an easy task: there is a fine line between an accurate model that is as simple as possible, and an unrealistic model.’

This paper is arranged in three main sections.

In the following section (General considerations about modelling vector-borne infections), we show how, considering the purpose of the model, we can simplify the description of a complicated system as a vector-borne disease. We then illustrate how to limit the model variables according to our needs. In so doing, we aim to explain why there are many models of the same (or similar) systems with different numbers of variables [2–4].

The next section (Estimating R0 from the initial growing phase of an outbreak: several pitfalls), examines one example found in a recent paper [5] that illustrates the dangers of basing control strategies on models without considering their limitations. We show that the method used cannot be applied as done by the authors, and that as a consequence, some of the conclusions reached are not correct. Unfortunately, the incorrect results, if taken as true by public health authorities, would greatly harm the affected populations and the reputation of the use of models in this field.

Finally, in the ‘Backward bifurcation’ section, we review an interesting paper by Garba et al. [6] that contains some biological assumptions that are inappropriate for dengue but may apply to other vector-borne infections. In addition, it contains some algebraic misprints that make it difficult to read. The paper's conclusion is that a backward bifurcation exists in the system; this is examined in our paper from a different point of view. Furthermore, the conclusions of Garba et al., which do not apply to dengue, would make the control of even those diseases to which Garba's parameters do apply extremely difficult. We argue that the values of the biological parameters used by Garba et al. are not realistic for dengue.

We will show in the ‘Estimating R0 …’ section that the variables in the equations of the models are densities, i.e. vectors/humans per unit area. Therefore, if these densities are spatially homogeneous and the area investigated is small, total numbers can be obtained by multiplying the variables by the area of the region under consideration. However, when we investigate the outbreak of an epidemic, we should consider that the initial infection is not distributed homogeneously throughout the area under consideration. In the literature, this is often disregarded and epidemics are investigated by assuming that the disease invades an area homogeneously. In Appendix I, we show the effects of the initial distribution of the disease on the size and duration of the epidemic.

GENERAL CONSIDERATIONS ABOUT MODELLING VECTOR-BORNE INFECTIONS

We will use dengue as an example of a vector-borne disease to illustrate points that are also valid for other vector-borne diseases, such as malaria and yellow fever. We do this to simplify the notation and make the points we want to emphasize simpler to understand.

In the dengue system, there are several populations involved: a human population, an adult mosquito population, at least six aquatic forms and mosquito eggs. In addition, there is the virus, which in dengue's case will be one of four known serotypes.

Our first point is the question of how to choose the populations that will enter the model. In the seminal papers by Ross [2] and Macdonald [3] (that address malaria), only adult mosquitoes, humans and parasites were considered. This was because they wanted to investigate the existence of critical sizes of these populations, below which the disease would disappear. In the mathematical literature, a model exhibiting this feature is said to have a threshold and, in the case of diseases, this threshold is given by the well-known basic reproduction number, R0 [7]. Let us briefly recall a slightly generalized form of the classical Ross–Macdonald model [2, 3]. The variables are described in Table 1 and are usually denoted as ‘compartments’ of the model.

Table 1.

Variables of the model and their biological description

Variable Biological description
SH Density of susceptible humans
LH Density of latent humans
IH Density of infected humans
rH Density of recovered humans
SM Density of susceptible mosquitoes
LM Density of latent mosquitoes
IM Density of infected mosquitoes

The equations that govern the dynamics of the system are given below and explained immediately afterwards.

graphic file with name S0950268814002660_eqn1.jpg (1)

The model parameters and their biological interpretation are given in Table 2.

Table 2.

Model parameters and their biological interpretation

Parameter Biological meaning
a Average daily rate of biting
b Fraction of bites actually infective to humans
δH Latency rate in humans
μH Human natural mortality rate
αH Dengue mortality in humans
γH Human recovery rate
ηH cηH is the fraction of bites in latent humans that are infective to mosquitoes
σH Loss of immunity rate
θH Loss of infectiousness in humans
ΛH Human immigration rate density explained in the text
c Fraction of bites in infected humans that are infective to mosquitoes
μM Natural mortality rate of mosquitoes
γM Latency rate in mosquitoes
ηM cηM is the fraction of bites of latent mosquitoes that are infective to humans
ΛM Mosquito immigration rate density explained in the text

Let us explain the meaning and limitations of the above model. First, as explained, the variables are densities, i.e. the number of humans/vectors per unit area. Therefore, to use the model as it is written above, we should consider an area where the population is approximately homogenously distributed and multiply each variable by this area. A qualitatively comprehensive attempt to discuss the challenge of calculating parameters taking into account spatial heterogeneities can be found in [8]. One particularly important point is raised by the term

graphic file with name S0950268814002660_eqn2.jpg (2)

Let us explain the meaning of this term. The parameter a is a composed quantity. Let a be the area explored by a mosquito via the joint movement of humans and mosquitoes. Let ξ be the number of bites a mosquito inflicts per unit time and per unit area in the human population. Then, ξAIM is the number of bites that AIM infected mosquitoes inflict on NHA people. Hence, the fraction of bites inflicted on susceptible humans is ξAIM(SHA/NHA) = αIM(SH/NH), where

graphic file with name S0950268814002660_eqn3.jpg (3)

Therefore, the number of susceptible humans that acquire the infection from infected mosquitoes per unit time is abIM(SH/NH), where b is the probability that a bite from an infected mosquito results in an infected (latent) human. Assuming that latent mosquitoes also transmit the infection, although with a lower probability, expressed by ηM, we see that equation (2) represents the density of new infections per unit time due to mosquito bites.

Analogously, the term Inline graphic represents the density of new infections per unit time in mosquitoes due to mosquito bites on infective humans.

The two quantities ΛH and ΛM are the number of humans and vectors born or otherwise introduced per unit area per unit time into the susceptible compartments. It is usual to assume that ΛH is a logistic term of the type Inline graphic, where rH is the Malthusian parameter and KH is the carrying capacity. Analogously, ΛM is the quantity of vectors that are born or otherwise introduced per unit area per unit time.

The other terms are transition terms between the compartments as explained, for example, in [9].

From equation (1), we can deduce [4, 9, 10] that the disease cannot invade the host population if R0 is <1, where R0 is

graphic file with name S0950268814002660_eqn4.jpg (4)

The terms fH and fM are defined as

graphic file with name S0950268814002660_eqnU1.jpg

In the limit when ηM = 0 and δH→∞, we obtain the expression of R0 of the original Macdonald model [3]:

graphic file with name S0950268814002660_eqn5.jpg (5)

The above result is very important because it indicates that we do not have to completely eradicate the mosquito population to prevent the disease from invading the host population [2]. Note, however, that the model is valid only when applied to a region where the populations involved (mosquitoes and humans) are spatially homogeneous, and in any case, border effects were neglected. We shall expand on this later in the paper.

In some regions of the world, seasonality affects the mosquito population considerably and, in some cases, the mosquito density falls so much that transmission is interrupted in the dry season. The disease, however, overwinters and reappears in the next season. A hypothesis to explain this phenomenon is transovarian transmission in the mosquitoes [4]. In this case, we are therefore forced to consider in the model the aquatic stages of the vector. Control measures that aim for the destruction of breeding places also force us to include aquatic forms in the model, even if seasonality is negligible. The model described in equation (1) has to be modified to include the immature forms. This can be done by modifying the last three equations related to the vectors in system (1) as follows:

graphic file with name S0950268814002660_eqn6.jpg (6)

First, we introduce two new system variables (compartments) representing non-infected and infected aquatic forms: SE and IE, respectively. For simplicity, we consider all the aquatic forms, i.e. eggs, larvae and pupae, as a single compartment (we use a subscript E to represent eggs). The new system reads

graphic file with name S0950268814002660_eqn7.jpg (7)

The new parameters in system (7) are described in Table 3.

Table 3.

Parameters and their biological meaning in the model with aquatic forms

Parameter Biological meaning
p Hatching rate of susceptible eggs
cs Climatic factor
g Proportion of infected eggs that develop into infected mosquitoes
rM Oviposition rate
μE Natural mortality rate of eggs
KE Carrying capacity of eggs

Let us now describe the meaning of some terms of system (7). The term pcs(t)SE represents the number of non-infected eggs per unit area per unit time that reach the adult stage. The parameter cs(t) was introduced to mimic seasonality (see [4]). The term pcs(t)IE represents the number of infected eggs per unit area per unit time that reach the infected adult stage. The term Inline graphic is a logistic-like term that represents the rate of mosquito reproduction in the form of non-infected eggs. Similarly, Inline graphic is a logistic-like term that represents the rate of mosquito reproduction in the form of infected eggs. KE is the carrying capacity of the environment. The remaining terms are transition rates between the compartments. This modified system also predicts a threshold for the infection to invade the host population (for details, see [4]). Note that we assume that the mortality of infected eggs is the same as the mortality of non-infected eggs. This is easily modified but, in the spirit of avoiding unnecessary experimentally unknown facts, we prefer to assume them equal. The proportional distribution of infected eggs into non-infected and infected mosquitoes was briefly discussed in [4]. In this reference, it was shown that this parameter is very important to explain semi-quantitatively dengue overwintering.

ESTIMATING R0 FROM THE INITIAL GROWING PHASE OF AN OUTBREAK: SEVERAL PITFALLS

From the discussion in the previous section, we can see that calculating R0 for a given population is an important task. This can be done in several ways. A simple way first proposed by May & Anderson [11] for directly transmitted infection was adapted by Massad et al. [12] and further refined by Favier et al. [13] for vector-borne infections. The first pitfall we will discuss was the use made by Pinho et al. [5] of this method as described below.

In their paper, Pinho et al. [5] analysed the dengue epidemic in Salvador, Brazil, and concluded that

The value of R0 is greater than 1 for the epidemic in 1995–1996 for any chosen value of the vector-control parameter, indicating that other strategies would be necessary besides the adult vector-control, as such as the control of the mosquito's aquatic phase, to reduce its force of infection and therefore to control the epidemic.

The aim of this section is to show that this conclusion cannot be deduced from either the model they used or from the calculations presented in their paper.

In fact, the equilibrium solutions of the model given by their equations (2.1) can be deduced analytically [10]. It is also possible, and easier, to deduce two thresholds. The first (denoted ‘basic offspring’ or demographic reproduction number) determines the permanence or extinction of the mosquito population. The second is a variant of the classical Macdonald [3] basic reproduction number (R0) and determines the establishment or extinction of the infection. From these results, and also from numerical simulations of the model, it is easy to see that by increasing the adult mortality rate, μM, or the aquatic phase mortality rate, μa, we can reach Macdonald's threshold before reaching the basic offspring threshold. Therefore, the disease dies out without eliminating the mosquito population (see Fig. 1 below from Pinho et al.'s model). Thus, Macdonald's threshold is useful. It would be useless if Pinho et al. [5, pp. 5692] were correct.

Fig. 1.

Fig. 1.

The values of cM such that the disease dies out but the mosquito population is still present.

The authors reached their conclusion by using their equation (3.8)

graphic file with name S0950268814002660_eqn8.jpg (8)

This equation, or rather a simplified version of it, was obtained in [13–15]. This technique assumes a force of infection Λ > 0 and, therefore, no value of the control parameter, cM (which Pinho et al. [5] added to the adult mortality rate, μM), can reduce R0 below unity. To investigate the case in which Λ < 0 and, therefore, R0 < 1, another method must be used, as described in [15]. Therefore, Pinho et al.'s conclusion that ‘other strategies would be necessary besides the adult vector-control […] to reduce the force of infection’ cannot be deduced from their equation (3.8) and is, in fact, wrong. Again, we stress that Macdonald's threshold would be useless if Pinho et al.'s [5] conclusion were true.

When R0 < 1, as explained in [15, 16], although an outbreak can occur, it will naturally fade away.

We shall return to the above method of estimating R0. Here we only mention that this method is correct if the disease is introduced in a small portion of the region, as it usually is, that is going to be invaded. This is because the exponential growth is deduced by assuming that the disease is introduced in a uniform region. However, as we shall see in Appendix I, when introduced in just a small portion of the region, the development of the disease proceeds as a wave. Since what is usually reported is the number of cases per unit time (epidemiological week, for instance) this method can only be used if the disease propagates slowly in space because (see Appendix I) the entire epidemic curve is not exponential but is so only in the very first initial phase.

Finally, to end this section, we note that the sensitivity of the mortality rates of mosquito phases was investigated in [10, 17, 18]. From these papers, we conclude that the adult mosquito mortality rate is the parameter to which R0 (and also the force of infection) is, by far, most sensitive. Compared with the aquatic phase mortality rate, this is rather intuitive because, in equilibrium, killing one mosquito prevents the appearance of hundreds of eggs and other aquatic phases, whereas killing one egg prevents the appearance of just one mosquito. Orders of magnitude of the relative effect between control measures directed against mosquitoes vs. control measures directed against eggs were given in [10]. In this paper, we compared the sensitivity of R0, the force of infection and the steady-state prevalence to the control parameters. In general, the sensitivity to control measures (increase of mortality rates) directed against mosquitoes is more efficient by 2–3 orders of magnitude. However, these calculations did not take into account the logistic and financial costs of any of the above-mentioned strategies.

BACKWARD BIFURCATIONS

In an influential and interesting paper, Garba et al. [6] claim that a model very similar to the one given by equation (1) exhibits so-called backward bifurcation (subcritical bifurcation). In this section, we find the stationary solutions of system (1) and prefer not to call the observed phenomena backward bifurcation. We examine this very interesting system from a different point of view and also discuss the possible origin of the phenomena exhibited by Garba et al.'s model [6].

The stationary solution for the prevalence of the infection in humans, IH/NH, is obtained by replacing the derivatives on the right side of the system (1) equations and solving the resulting nonlinear system of equations. The results (see [10, 19] for more details) are:

graphic file with name S0950268814002660_eqn9.jpg (9)

which is the equilibrium prevalence of the infection in humans, where

graphic file with name S0950268814002660_eqn10.jpg (10)
graphic file with name S0950268814002660_eqn11.jpg (11)

and

graphic file with name S0950268814002660_eqn12.jpg (12)

To obtain equation (9), we assumed a logistic birth (or immigration) rate for ΛH

graphic file with name S0950268814002660_eqn13.jpg (13)

where rH is the per capita birth (or immigration) rate of humans and KH is the carrying capacity of humans.

The stationary solution for the total human population, NH, is

graphic file with name S0950268814002660_eqn14.jpg (14)

where

graphic file with name S0950268814002660_eqn15.jpg (15)

and

graphic file with name S0950268814002660_eqn16.jpg (16)

The stationary solution for the specific case of dengue prevalence in humans, IH/NH, is obtained by making δH → ∞ and θH = σH = 0 in equation (9)

graphic file with name S0950268814002660_eqn17.jpg (17)

The basic reproduction number can be deduced by making the numerator of the previous equation equal to zero, resulting in equation (5).

In the specific case of dengue, the value of NH reduces to:

graphic file with name S0950268814002660_eqn18.jpg (18)

where

graphic file with name S0950268814002660_eqn19.jpg (19)

and

graphic file with name S0950268814002660_eqn20.jpg (20)

Equation (17) does not show any backward bifurcation.

A possible misprint in Garba et al.'s [6] paper results from writing ΛH [their equation (1)] as

graphic file with name S0950268814002660_eqnU3.jpg

The correct equation should have NH instead of NM in the denominator because, as can be noted in system (1), the total number of bites inflicted by infected mosquitoes is a(IM+ηMLM), a fraction of which, SH/NH, are on susceptible humans, of which a fraction b is actually infective.

Garba et al.'s [6] assumption that the total number of bites that mosquitoes inflict in people is, of course, equal to the total number of bites that people receive is correct. However, the force of infection from mosquito to human, ab/NH(IM + ηMLM), depends on b, whereas the force of infection from human to mosquito, ac/NH(IH + ηHLH), depends on c. Therefore, equation (4) in Garba et al.'s [6] paper is correct only in the particular case when b = c. In addition, Garba et al. [6] assumed that susceptible and infected mosquitoes bite with different rates, although this is not explicitly used in their model. The points mentioned in the above remarks on Garba et al.'s [6] paper have no influence on the existence of backward bifurcation. We mention these facts for completeness and to describe the Garba et al. [6] paper fairly, i.e. describing all the biological realities that they introduce in their model.

To compare our model with that in the paper by Garba et al. [6], in more detail, we take, ΛH = const., instead of the one given by equation (13), and make ΛM also constant. The system can be solved, and the stationary state value of IH/NH (the translation to Garba et al.'s [6] notation is shown in Appendix II) is:

graphic file with name S0950268814002660_eqn21.jpg (21)

where

graphic file with name S0950268814002660_eqn22.jpg (22)

It is easy to demonstrate that one of the roots of equation (21) is negative. Making the positive solution equal to zero, we can deduce the threshold. In fact, the threshold (and therefore R0) can be deduced by making Inline graphic, i.e. Cg = 0. The result is

graphic file with name S0950268814002660_eqn23.jpg (23)

This value of R0 can also be deduced by linearizing the system (1), using Garba et al.'s [6] notation, around the trivial solution (no disease). The value of NM/NH is crucial. Garba et al. [6] use ΛMμH/ΛHμM (see [6, p. 14]). However, to obtain the other points in their figure 2, it is necessary to increase the initial value of NM with respect to NH. This is what we think Garba et al. [6] did: they varied the parameters and calculated R0 using NM/NH = ΛMμH/ΛHμM, but introduced infected mosquitoes into the initial condition. Introducing infected mosquitoes into the initial condition changes R0 by increasing NM/NH. Therefore, the values given by R0 in Figure 2 are actually greater than 1.

Fig. 2.

Fig. 2.

The three behaviours of the system described in the text.

Consider the value of R0 [equation (23)]. Because the disease affects both populations involved, we must note that, if NM/NH calculated at time t = 0 makes R0 > 1, then the disease will invade the population in the sense that immediately after 0 the values of IM and IH will be greater than their values at t = 0.

If the disease invades the population, two things can happen. If the value NM(t)/NH(t) is such that, at some value of t, the value of R0 falls below 1, the disease will disappear. If this does not happen, the disease will go to the steady state. This depends on the initial condition. For the values given by Garba et al. [6], who do not use densities, the transition occurs for SV(0) = 2717.8445, EV(0) = 0, IV(0) = 100, SH(0) = 511.82, EH(0) = 0, IH(0) = 1, RH(0) = 0. Note that without disease, the equilibrium values are NV = 1875 and NH = 512.82. The resulting figure is shown below.

A summary of the above results will now be given. First, we define a function of t, R(t), as

graphic file with name S0950268814002660_eqn24.jpg (24)

We can understand the behaviour of this system by using this function as explained below.

  1. If R(t = 0) (which happens to be R0) is less than 1, then the disease will not invade (see the two lowest curves in Fig. 2);

  2. If R(t = 0) is greater than 1, the disease will invade the population, but we have to distinguish between two cases:
    1. If, for some t, R(t) drops below 1, then the disease disappears (see curves 3–7 in Figure 2)
    2. If R(t) is greater than 1 for all t, then the disease goes to a steady state different from zero (see curves 8–15 in Fig. 2)
  3. There is a threshold value for NM(0)/NH(0), below which case (2.1) occurs and above which case (2.2) occurs. We found this threshold numerically but we suspect that, by using Garba et al.'s [6] method, this can be obtained analytically.

In Appendix II, we show in detail why we prefer not to call the phenomena described above and in Garba et al.'s [6] paper a backward bifurcation, as is suggested by Garba et al. [6].

CONCLUSIONS

Mathematical models in sciences must have their complexity adjusted to their goals, and, as we have seen, we have basically two classes of models. At one extreme we have models that are intended to check if our intuition about why a certain phenomenon occurs is correct. This model must be as simple as possible, otherwise it may fail. An example of such a model is a model designed to test dengue overwintering [4]. At the other extreme, we have models whose goals are to predict future outcomes. These models are necessarily very complex. An example of such a model (for dengue vaccination) is given by [20]. Of course there are models in between these classes.

In this paper, the model belonging to the second class of models (to estimate the basic reproduction number from the initial phase of the infection) fails by not including sufficient complexities that are necessary to deal with the data.

We have seen in Appendix I why the effects of the spatial distribution of a vector-borne infection should be taken into account when estimating the basic reproduction number from the initial size of the epidemics. Another crucial effect that has to be taken into account is that the size and duration of the epidemic depend on the initial distribution of the invasion of the infection, i.e. where and how it was introduced in a given region previously free of the infection.

The model belonging to the first class that is examined in this paper is one that tries to clarify the role of the so-called backward bifurcation. In the ‘Backward bifurcations’ section, we examined in detail the paper by Garba et al. [6] which analyses this possible role of the so-called backward bifurcation in dengue.

To summarize the above considerations, we list some recommendations, using vector-borne diseases models, to avoid some of our misgivings about the use of models:

  1. Complicated models of vector-borne infections should be used when attempting to make predictions about future events. They are error-prone if not all necessary biological realities are included otherwise their predictions may be unreliable. Many models of vector-borne diseases are designed to estimate parameters that are important to plan control measures. In the example we use in this paper, the estimation of the basic reproduction number from the initial phase of an epidemic is examined and examples of biological realities that should be included are given. Alternatively, we suggested another method to collect data: ideally a uniform region should be chosen with both populations uniformly distributed and only count cases from this region, from the beginning of the outbreak. Because people commute into and out this region, the above method underestimates the basic reproduction number. This error depends on the size of the region that should be carefully estimated. The region cannot be too large because of the propagation of epidemic waves as explained above. On the other hand, it cannot be too small to minimize the effect of people commuting into and out of the region. We plan to publish details of how to choose such a region in another paper. We should stress that most published calculations of the basic reproduction number are not bad approximations of R0, but should be carefully interpreted to account for error bounds.

  2. Models that have as a goal examination of the mechanism behind certain phenomenon should be as simply as possible. The model of this type examined in this paper deals with the existence of backward bifurcation. The model has, perhaps, too many variables. For instance, differential mortality in humans by dengue is known to be small and in the model studied is perhaps the cause of the so-called backward bifurcation. We conclude that this additional mortality should have not been introduced in the model for dengue. Of course the model may be useful for other diseases.

ACKNOWLEDGEMENTS

This work was partially supported by LIM01 HCFMUSP, Fapesp, CNPq, Dengue Tools under the Seventh Framework Programme of the European Community, grant agreement no. 282589, and MS/FNS (grant no. 27835/2012).

APPENDIX I. The initial condition

As explained before, most models of vector-borne infections assume (sometimes without saying so) that the variables are population densities and usually homogeneously distributed over a sufficiently large area. This approach has two problems: the first, solved in this Appendix, is that modifications of this model are needed before it can be applied to situations where inhomogeneous populations occur; the second problem is that authors usually assume that the disease is also introduced into the region in a uniformly distributed manner. In fact, the disease is introduced in a small area of the region and the disease propagates through the region as a wave [21]. Let us explain the latter statement in detail.

When the disease is introduced in a virgin area (village, city, etc.), it is introduced in a small geographical area of this region and then propagates as a wave to other places of the region. Since what is usually reported is the number of cases per unit time (epidemiological week, for instance) the method discussed in the ‘Estimating R0 …’ section can only be used if the disease propagates slowly in space. This is the reason why only a few points of the epidemic curve can be used. When not used properly, the method can fail to produce a good measure of the basic reproduction number and in any case the number so derived applies only to the small region where the infection was introduced. Of course if the region is uniform this number is valid for the whole region. In this Appendix we show how to model the propagation of the infection although in this paper this is done in a very sketchy manner; however, this is important as explained above. However, the propagation of an epidemic throughout a region is of central importance in understanding the infection dynamics and in interpreting the available data. It is extremely difficult to include the mobility of humans and vector populations and we suspect that in some cases no general statements can be made. This section, however, is important in highlighting that some general consequences can already be deduced without investigating in detail some points, namely, land use, population density, overlay, etc.

In this Appendix, we compare the outcomes of two epidemics, one of which assumes that the disease is introduced uniformly in the region and the second which assumes the disease is introduced in just a small area and then propagates. Thus, by comparing the two results we can estimate the effect of the fact that epidemics usually start in small regions.

We begin estimating this effect on a one-dimensional road of length D. In the case in which we assume that the disease is introduced uniformly, the system of equations (1) can be numerically integrated, and the resulting epidemic compared. To calculate the effect of introducing the disease in just small regions, the system of equations (1) has to be modified to consider the spatial dimension. Let SH(x,t)dx be the number of susceptible humans living between x and x + dx at time t. The other variables are defined similarly.

APPENDIX I. (25)

where

APPENDIX I. (26)

and

APPENDIX I. (27)

In equation (26), aβH(x,x′) is the number of bites per unit time that IM(x′,t)dx′ infected mosquitoes inflict in SH(x,t)dx susceptible humans (note that infected mosquitoes are in position x′ and susceptible humans are in position x). Similarly, in equation (aβM(x,x′) is the number of bites per unit time that SM(x′,t)dx′ susceptible mosquitoes inflict in IH(x,t)dx infected humans (susceptible mosquitoes are in position x′ and infected humans are in position x). As a first approximation, we may assume that βH(x,x′) and βM(x,x′) are the same functions. For simplicity, we also assume that βH(x,x′) = βH(|x−x′|) and βM(x,x′) = βM(|x−x′|) are functions of the distance |x−x′ only.

The standard way to solve system (25) is by choosing one of its variables [say, IH(x,t) and writing an integral equation for it. The result in this case is an integral equation with 16 terms that will be analysed in a future publication.

We can, however, estimate the phenomena we are investigating by selecting a less complicated system [21] that describes a simple SIR model, given by equation (3) of the above reference.

As mentioned by Postnikov & Sokolov [22, pp. 209], equations (3), (4) and (10) of [21] are more general than the equations most commonly seen in the literature.

In a two-dimensional region, which, for simplicity, will be considered circular, the system of equations (25) is modified by replacing x with r, the distance from an arbitrary point to the centre, and adding an angular variable θ. Thus, SH(r,θ,t)ds is the number of susceptible humans living in a small area ds = r dr dθ around the point (r, θ) at time t. This unfolds similarly for the other variables.

On the other hand, equations (26) and (27) become

APPENDIX I. (28)

and

APPENDIX I. (29)

Returning to the one-dimensional case, we obtain, by solving numerically equation (10) of reference [21], the results reproduced in Figure 3a for the case where the initial condition covers the entire road. The epidemic, Inline graphic, consists of a huge peak that almost disappears and later returns after a significantly long time. This is not what is observed in the real world.

Fig. 3.

Fig. 3.

Numerical solution for the one-dimensional case when: (a) the initial condition covers the entire road; (b) the disease is introduced on one end of the road. Figures not to the same scale.

When the disease is introduced only at one end of the road, Figure 3b shows the epidemic [number of cases vs. time t, i.e. Inline graphic]. In this case, we can see that the epidemic rises much slower and lasts for a very long time, being interrupted only if seasonality is considered. This can be understood in the following way: the epidemic wave travels from, for example, the left side of the road to the right side. The epidemic that started because of the initial condition, at the left side, vanishes, but it is still recorded by the cases that are happening on the wave front. It may happen that the disease reappears on the left side before the wave reaches the right side. We then have the impression that the disease reaches steady state.

Returning to the case of the calculation of R0 from the initial phase of the outbreak, we can see that, in nature, the disease is frequently introduced in a small part of the environment and that because of what was stated above, one has to consider only the very beginning of the outbreak. Alternatively, we can modify the way data are collected. Ideally one should choose a uniform region with both populations uniformly distributed and collect cases only from this region from the beginning of the outbreak. Because people commute into and out this region, the above method underestimates the basic reproduction number. This error depends on the size of the region that should be carefully estimated. Other challenges of introducing spatial heterogeneities in epidemic models are qualitatively analysed in [8].

APPENDIX II. Further comments on Garba et al.'s [6] findings

For a more detailed comparison with the paper by Garba et al. [6], we consider the following system of differential equations:

APPENDIX II. (30)

We intend to show that the above system presents a threshold that has a branch with negative values.

In the case of dengue, the disease-induced mortality rates in the populations, αM in the vector population and αH in the human population, are usually assumed to be zero. In the calculations below, we keep those as different from zero, for completeness.

The stationary solution for human prevalence is given by

APPENDIX II. (31)

where

APPENDIX II. (32)

When A3 = 0, we have

APPENDIX II. (33)

which is equivalent to

APPENDIX II. (34)

the threshold condition for the basic reproduction number is R0 = 1. In this case (A3 = 0), the coefficient A2 becomes

APPENDIX II. (35)

For A3 = 0, one root of IH/NH is zero and the second root of equation (31) is

APPENDIX II. (36)

The expression for X−αH is

APPENDIX II. (37)

and the expression for Y−αM is

APPENDIX II. (38)

Both X−αH and Y−αM are positive, and, as a consequence, the coefficients A1 and A2 are positive. Hence, the second root [equation (36)] of IH/NH is negative. Thus, we prefer not to call the interesting findings by Garba et al. [6] a backward bifurcation. Our interpretation of the phenomena observed by Garba et al. is described in the present paper in the last four paragraphs of the section ‘Backward bifurcations’.

The translation from the notation of this paper to the notation used by Garba et al. [6] is presented in Tables 4 and 5.

Table 4.

Translation from the notation of this paper to the notation used by Garba et al. for the variables

Present notation Garba et al. [6] notation
SH SH
LH EH
IH IH
RH RH
SM SV
LM EV
IM IV

Table 5.

Translation from the notation of this paper to the notation used by Garba et al. for the parameters

Present notation Garba et al. [6] notation
ΛM ΠV
ΛH ΠH
γM σV
αM δV
δH σH
γH τH
αH δH
μH μH
μM μV

The results obtained by Garba et al. [6] may not be entirely correct because they come from writing λH [their equation (1)] as

APPENDIX II.

The correct equation should have NH instead of NM in the denominator because, as can be noted in system (1), the total number of bites inflicted by infected mosquitoes is a(IM + ηMLM), a fraction SH/NH of which are on susceptible humans, of which a fraction b is actually infective. Therefore, as mentioned previously, equation (4) in Garba et al.'s [6] paper is correct only if b = c.

DECLARATION OF INTEREST

None.

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