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. 2000 Sep;7(5):835–839. doi: 10.1128/cdli.7.5.835-839.2000

An IS711 Element Downstream of the bp26 Gene Is a Specific Marker of Brucella spp. Isolated from Marine Mammals

Axel Cloeckaert 1,*, Maggy Grayon 1, Olivier Grepinet 1
PMCID: PMC95966  PMID: 10973465

Abstract

DNA polymorphism of the bp26 gene, coding for a diagnostic protein antigen for brucellosis, was assessed by PCR and restriction fragment length polymorphism analysis using primers to amplify the bp26 gene with its flanking regions. Surprisingly, whereas PCR performed on DNA of the reference strains of the six recognized Brucella species produced a product of the expected size (1,029 bp), PCR performed on DNA of three representative strains from marine mammals (from a seal, a dolphin, and a porpoise) produced a larger product, of about 1,900 bp. Nucleotide sequencing of the 1,900-bp PCR products revealed the presence of an insertion sequence, IS711, downstream of the bp26 gene and adjacent to a Bru-RS1 element previously described as being a hot spot for IS711 insertion. PCR performed on a large number of field strains from different geographic origins and from marine mammal isolates indicated that the occurrence of an IS711 element downstream of the bp26 gene was a feature specific to the marine mammal Brucella strains. Thus, this PCR assay is able to differentiate Brucella terrestrial isolates from marine mammal isolates and could be applied for diagnostic purposes.


Brucellae are gram-negative, facultative, intracellular bacteria that can infect many species of animals, as well as humans. Six species are recognized within the genus Brucella: B. abortus, B. melitensis, B. suis, B. ovis, B. canis, and B. neotomae (8). This classification is mainly based on differences in pathogenicity and host preference (8). The main pathogenic species worldwide are B. abortus, which is responsible for bovine brucellosis, B. melitensis, the main etiologic agent of ovine and caprine brucellosis; and B. suis, which is responsible for swine brucellosis. These three Brucella species may cause abortion in their hosts, which results in huge economic losses. B. ovis and B. canis are responsible for ram epididymitis and canine brucellosis, respectively. For B. neotomae, only strains isolated from desert rats have been reported. Distinction between species and biovars is currently performed by differential tests based on phenotypic characterization of lipopolysaccharide antigens, phage typing, dye sensitivity, CO2 requirement, H2S production, and metabolic properties (2).

Brucella strains have also been isolated from a great variety of wildlife species, such as bison, elk, feral swine, wild boars, foxes, hares, African buffalo, reindeer, and caribou (9).

The broad spectrum of Brucella hosts has recently been enlarged to include marine mammals. A number of recent reports have described the isolation and characterization of Brucella strains from a wide variety of marine mammals, such as bottlenose dolphins (Tursiops truncatus), common seals (Phoca vitulina), harbor porpoises (Phocoena phocoena), common dolphins (Delphinus delphis), Atlantic white-sided dolphins (Lagenorhynchus acutus), striped dolphins (Stenella caeruleoalba), hooded seals (Cystophora cristata), grey seals (Halichoerus grypus), a minke whale (Balaenoptera acutorostrata), and an otter (Lutra lutra) (3, 5, 10, 13, 18, 22). These strains were identified as brucellae by their colonial and cell morphology, staining characteristics, biochemical activity, agglutination by monospecific antisera, susceptibility to lysis by a Brucella-specific bacteriophage, and metabolic profiles. However, their overall characteristics were not assimilable to those of any of the six recognized Brucella species. Therefore, it was suggested that they comprise a new species to be called B. maris based on the current classification system (18).

It has been shown, on the basis of DNA-DNA hybridization studies, that the genus Brucella is a highly homogeneous group (>90% DNA homology for all species), and it has been proposed that this genus should comprise only one genomic species (26). Brucella strains isolated from marine mammals also fall into this homogeneous group according to DNA-DNA hybridization (25). Thus, several techniques have been employed to find DNA polymorphisms which would enable the molecular typing of the Brucella species and their different biovars (1, 4, 7, 11, 12, 14, 16, 17, 20, 21, 27).

The BP26 protein, also named Omp28, has been previously identified as an immunodominant antigen in Brucella infections of cattle, sheep, and humans (6, 19, 23). In the present study, DNA polymorphisms of the bp26 gene, coding for this protein, were assessed by PCR-restriction fragment length polymorphism analysis. Primers were designed to amplify the entire bp26 gene, with its flanking regions, based on the bp26 nucleotide sequence of B. melitensis 16M (GenBank accession no. U45996) (6). The primers used were 26A (forward primer; 5′ GCCCCTGACATAACCCGCTT 3′) and 26B (reverse primer; 5′ GAGCGTGACATTTGCCGATA 3′). PCR was performed on extracted DNAs as described previously (7, 27). Briefly, amplification reaction mixtures were prepared in volumes of 100 μl containing 10 mM Tris-HCl (pH 9.0), 50 mM KCl, 1.5 mM MgCl2, 0.1% Triton X-100 (1× PCR buffer; Promega, Charbonnieres, France), a 200 μM each concentration of deoxynucleoside triphosphate, a 1 μM concentration of each primer, 100 ng of genomic DNA, and 5 U of Taq DNA polymerase (Promega). The temperature cycling for the amplification was performed in a GeneAmp PCR system 9600 thermocycler (Perkin-Elmer) as follows: cycle 1 was 94°C for 5 min (denaturation); the next 30 cycles were 58°C for 1 min (annealing), 70°C for 1 min 30 s (extension), and 94°C for 1 min (denaturation); and the last cycle was 58°C for 1 min (annealing) and 70°C for 10 min (extension). The PCR products were run on 1% (wt/vol) agarose gels containing 0.5 μg of ethidium bromide per ml.

Surprisingly, whereas PCR performed on DNA of the reference strains of the six recognized Brucella species produced a product of the expected size (1,029 bp), PCR performed on DNA of three representative strains from marine mammals (a seal, a dolphin, and a porpoise) produced a larger product, of about 1,900 bp (Fig. 1). The nucleotide sequences of the 1,900-bp PCR products of the three marine Brucella strains (B2/94, B1/94, and B14/94) were determined, and they revealed the presence of an insertion sequence, IS711, downstream of the bp26 gene (Fig. 2). Interestingly, the IS711 element was found adjacent to a Bru-RS1 element described as being a hot spot for IS711 insertion (15). Bru-RS1 is a repeated palindromic DNA element of 103 bp which is highly conserved among brucellae and found more than 35 times in the Brucella genome (15). Such a Bru-RS1 element was previously described to occur downstream of the bp26 gene of B. melitensis 16M (19). Insertion of the IS711 element resulted in duplication of the nucleotides TA (data not shown) at the target site, as previously described for B. ovis (16). To assess whether the occurrence of an IS711 element downstream of the bp26 gene was specific to Brucella strains isolated from marine mammals, PCR with primers 26A and 26B was performed on a large number of field strains of Brucella from different geographic origins and a large number of the recent isolates from different marine mammals (Tables 1 and 2). All terrestrial isolates, including B. ovis strains for which a higher number of IS711 copies have been described (16, 17, 21), showed a PCR profile in an agarose gel with a band of size of 1,029 bp, whereas PCR on all marine mammal isolates showed the typical 1.9-kb band, implying the presence of the IS711 element (data not shown). The bp26 gene by itself, as shown by restriction fragment length polymorphism analysis with different restriction enzymes (AluI, ClaI, EcoRII, EcoRV, HaeII, HaeIII, HinfI, PstI, Sau3A, StyI, and TaqI) and nucleotide sequencing, did not appear to be useful for molecular typing purposes and thus must be rather conserved among brucellae (data not shown). Only a few differences were observed in the bp26 gene, and these were in B. abortus strains (data not shown).

FIG. 1.

FIG. 1

PCR-amplified bp26 gene using primers 26A and 26B of B. melitensis 16M (lane 2) and seal isolate B2/94 (lane 3) run on a 1% agarose gel. Lane 1, λ DNA EcoRI/HindIII ladder (Appligene, Illkirch, France).

FIG. 2.

FIG. 2

Schematic view deduced from nucleotide sequencing of the bp26 gene and flanking regions of B. melitensis 16M and seal isolate B2/94. Arrowheads indicate the locations of the primers used for PCR.

TABLE 1.

Brucella reference, vaccine, and field strains from terrestrial mammals used in this study

Species Biovar Straina Host or source Geographic origin
B. abortus 1 544 (ATCC 23448; BCCN R4)b Cattle England
1 B19 (BCCN V1)c Cattle United States
1 99S (BCCN R20) Cattle United States
1 2308 (BCCN R23) Cattle United States
1 BCCN 92-73 Cattle France
1 BCCN 94-44 Human Algeria
1 BCCN 95-19 Chamois France
1 BCCN 95-50 Cattle Argentina
1 BCCN 95-51 Cattle Argentina
1 BCCN 95-55 Cattle Costa Rica
1 BCCN 96-62 Cattle Italy
2 86/8/59 (ATCC 23449; BCCN R5)b Cattle England
3 Tulya (ATCC 23450; BCCN R6)b Human Uganda
3 BCCN 91-90 Cattle Greece
3 BCCN 92-25 Cattle France
3 BCCN 92-104 Cattle Guinea
3 BCCN 93-15 Cattle Spain
3 BCCN 93-26 Dromedary Soudan
3 BCCN 94-18 Cattle France
3 BCCN 94-19 Cattle France
3 BCCN 94-63 Cattle France
3 BCCN 95-7 Cattle France
3 BCCN 95-12 Cattle France
4 292 (ATCC 23451; BCCN R7)b Cattle England
5 B3196 (ATCC 23452; BCCN R8)b Cattle England
6 870 (ATCC 23453; BCCN R9)b Cattle Africa
9 C68 (ATCC 23455; BCCN R11)b Cattle England
R 45/20 (BCCN V2)c Cattle England
R RB51 (BCCN V5)c Cattle United States
B. melitensis 1 16M (ATCC 23456; BCCN R1)b Goat United States
1 Rev.1 (BCCN V4a)c Goat Mexico
1 BCCN 75-478 Sheep Israel
1 BCCN 87-92 Human United States
1 BCCN 88-42 Sheep Israel
1 BCCN 90-61 Sheep South Africa
1 BCCN 92-70 Human France
1 BCCN 92-106c Unknown Algeria
1 BCCN 93-2 Human France
1 BCCN 93-4 Human France
1 BCCN 94-37 Human France
1 BCCN 96-28 Sheep Israel
2 63/9 (ATCC 23457; BCCN R2)b Goat Turkey
3 Ether (ATCC 23458; BCCN R3)b Goat Italy
3 BCCN 83-198 Human Spain
3 BCCN 90-112 Cattle Greece
3 BCCN 92-80 Sheep Spain
3 BCCN 92-118 Human Tunisia
3 BCCN 94-16 Cattle France
3 BCCN 95-30 Sheep Italy
3 BCCN 95-36 Goat Italy
3 BCCN 96-32 Sheep Israel
3 BCCN 96-142 Human France
3 BCCN 96-146 Human Algeria
B. suis 1 1330 (ATCC 23444; BCCN R12)b Swine United States
1 BCCN 95-13 Human New Caledonia
1 BCCN 96-138a Human Argentina
1 BCCN 98-21 Human France
1 BCCN 98-43 Unknown Argentina
2 Thomsen (ATCC 23445; BCCN R13)b Swine Denmark
2 BCCN 93-75 Swine Spain
2 BCCN 93-80 Swine Spain
2 BCCN 94-2 Boar Belgium
2 BCCN 94-9 Hare France
2 BCCN 94-11 Boar France
2 BCCN 97-59 Swine France
2 BCCN 97-100 Swine France
2 BCCN 97-107 Swine France
2 BCCN 98-9 Boar France
3 686 (ATCC 23446; BCCN R14)b Swine United States
4 40 (ATCC 23447; BCCN R15)b Reindeer Former USSR
5 513 (BCCN R21)* Wild rodent Former USSR
B. ovis 63/290 (ATCC 25840; BCCN R17)b Sheep Africa
Reo 198 (BCCN R22) Sheep United States
BCCN 76-247 Sheep France
BCCN 76-250 Sheep France
BCCN 91-66 Sheep Spain
BCCN 91-70 Sheep Spain
BCCN 91-208 Sheep Spain
BCCN 91-264 Sheep Argentina
BCCN 91-266 Sheep Argentina
BCCN 97-41 Sheep Argentina
BCCN 98-47 Sheep Argentina
B. canis RM6/66 (ATCC 23365; BCCN R18)b Dog United States
D519 (BCCN C1) Dog Madagascar
Hoy 1066 (BCCN C3) Dog United States
BCCN 87-62 Dog Canada
BCCN 87-65 Dog Canada
BCCN 96-104 Dog Romania
BCCN 96-121 Dog France
BCCN 97-60 Dog Argentina
B. neotomae 5K33 (ATCC 23459; BCCN R16)b Desert rat United States
a

ATCC, American Type Culture Collection; BCCN, Brucella Culture Collection, Nouzilly, France. 

b

Reference strain. 

c

Vaccine strain. 

TABLE 2.

Marine mammal sources of Brucella strains used in this study

Latin name Common name Brucella strain Geographic origin
Balaenoptera acutorostrata Minke whale B202R Norway
Cystophora cristata Hooded seal M2006/94/6 Scotland
Delphinus delphis Common dolphin B14/94, M644/93/1, M452/97/2 Scotland
Halichoerus grypus Grey seal M2375/94/3 Scotland
Lagenorhynchus acutus White-sided dolphin M997/94/2, M2438/95/1, M18/96/1, M181/97/1, M2788/97/1 Scotland
Lagenorhynchus albirostris White-beaked dolphin M870/97/1 Scotland
Lutra lutra Otter M1771/94/1 Scotland
Phoca vitulina Common seal B2/94, M2357/93/1, M2466/93/4, M2533/93/1, M292/94/1, M336/94/1, M339/94/2, M972/94/1, M490/95/1, M514/96/4 Scotland
Phocoena phocoena Porpoise B1/94, M1068/91/2, M39/94/1, M1570/94/1, M1661/94/2, M515/96/2, M854/98/8, M1747/98/3 Scotland
Stenella caeruleoalba Striped dolphin M2194/94/1, M40/95/1 Scotland
Tursiops truncatus Bottlenose dolphin 7763/2 France

IS711 elements, also known as IS6501 (21), have been described as useful targets for molecular characterization of Brucella species and biovars based on the number and distribution of IS711 copies within the bacterial genomes (4, 16, 17, 21, 24). IS711-based fingerprints were described as stable, species specific, and to some extent biovar specific. B. ovis has been shown to carry a larger number of IS711 copies than the other Brucella species (16, 17, 21). Recently, it has been shown that Brucella strains isolated from marine mammals have more copies of IS711 than all classical species except B. ovis (3). Bricker et al. (3) cloned one of these IS711 elements and its flanking regions to develop a PCR assay which would be specific for strains isolated from marine mammals. However, they obtained an amplification product of the expected size for all marine mammal isolates and not for the classical Brucella species and biovars, except for B. ovis. The PCR assay of our study with primers 26A and 26B, although developed by chance, has the advantage of discriminating between all terrestrial isolates, including B. ovis, and the marine mammal isolates. This simple PCR assay could have several uses in the future, such as possibly tracing these marine mammal strains if they are transmitted to livestock.

Nucleotide sequence accession numbers.

The nucleotide sequences of the genes from bp26 to IS711 have been deposited in GenBank under accession numbers AF242532, AF242533, and AF242534.

Acknowledgments

We thank G. Foster, B. Garin-Bastuji, and J. Godfroid for the gift of the Brucella strains isolated from marine mammals. We are grateful to J. M. Verger for helpful discussions.

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