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. 2022 Oct 24;45(4):e20220043. doi: 10.1590/1678-4685-GMB-2022-0043

Prevalence and molecular characterization of alpha and beta-Thalassemia mutations among Hakka people in southern China

XiangXing Zeng 1,2, ZhiFang Liu 3, CaiHua He 2, Jia Wang 1, LiXiang Yan 1
PMCID: PMC9601249  PMID: 36288450

Abstract

Our aim was to investigate molecular features of thalassemia for proper clinical consultation and prevention in Heyuan. In our research, a total of 25,437 positive screening subjects were further subjected to a genetic analysis of α-thalassemia (α-thal) and β-thalassemia (β-thal). The deletion of α-thal mutation was tested by Gap-PCR, while the non-deletion of α-thal and β-thal mutation were identified by the PCR-reverse dot blot (PCR-RDB) technique. Nested PCR detected Hkαα/-- SEA and Hkαα/αα. Among the 25,437 positive screening subjects, 44.09% (11216/25437) subjects were bearers of thalassemia variations, and 30.85% (7847/25437) subjects showed α-thal changes alone. Among the 23 genotypes with α-thal mutation alone, the three common genotypes were --SEA/αα(68.34%), -α3.7/αα(16.44%), and -α4.2/αα(6.38%). Of the 11.50% (2924/25437) subjects and 29 genotypes with β-thal mutation alone, the three common genotypes were βCD41-42N(36.22%), βIVS-II-654N(30.88%), and β-28N(13.47%). Additionally, of the 1.75% (445/25437) subjects and 55 genotypes showed both α- and β-thal mutations. We also identified 269 cases of Hb H and six patients of Hkαα. Furthermore, the common genotypes of α-thal and β-thal mutations were consistent with allele frequencies of mutations. Our study establishes molecular features of thalassemia among Hakka people in Heyuan. It will be useful for developing strategies to prevent thalassemia.

Keywords: Genetic mutations, Thalassemia, Hakka, Southern China

Introduction

Thalassemia is an inherited chronic hemolytic disease on account of the deletion or point mutation of the human globin gene. According to the type of defective gene, thalassemias are divided into α-, β-, γ-, δ-, δβ-, and εγδβ-thalassemias. Among them, α-thalassemia (α-thal) and β-thalassemia (β-thal) were the two main types (Barnett, 2019; Shafique et al., 2021; De Simone et al., 2022). Carriers of thalassemia mutations account for about 5% of the global population, particularly in tropical and subtropical areas, for instance, North Africa, the Mediterranean region, India, Southeast Asia, Pakistan, and the Middle East (Merkeley and Bolster, 2020). In China, thalassemia is mainly found in the south of the Yangtze River, especially in the Guangxi, Hainan, and Guangdong regions (Yang et al., 2019; Cheng et al., 2022).

Human hemoglobin has three different developmental stages in the embryo, fetus, and adult. At the molecular level, hemoglobin synthesis is determined by two multigene clusters which are located in chromosome 16 and chromosome 11, respectively (Merkeley and Bolster, 2020; Shafique et al., 2021). The underlying molecular defects in the α-globin or β-globin gene clusters constitute the foundation of hemoglobin synthesis defects and the various genetic forms of α- or βthal (Taher et al., 2018; Viprakasit and Ekwattanakit, 2018). According to the severity of clinical symptoms, thalassemia is primarily divided into thalassemia trait (TT), thalassemia intermedia (TI), and thalassemia major (TM). TI and TM are generally identified as thalassemia patients (Taher et al., 2018; Viprakasit and Ekwattanakit, 2018). The heterozygous state of α⁺-thal (ααT/αα,-α/αα,αTα/αα) or α0-thal (-α/-α, --/αα,-α/ααT) is general clinically microcytic anemia or asymptomatic. While α-TI also called hemoglobin H disease (Hb H) (--/-α, --/αTα) is usually due to the compound heterozygous types for α⁺-thal and α0-thal. The homozygous types for α0-thal lead to hemoglobin Bart’s (--/--), which gives rise to death in utero or shortly after birth (Farashi and Harteveld, 2018; Kalle Kwaifa et al., 2020). The β-thal heterozygous state (β+N, β0N), which is called β-thalassemia trait or β-thalassemia minor, usually presents as asymptomatic microcytic anemia. Both β-thalassemia intermedia (β-TI) and β-thalassemia major (β-TM) arise from compound heterozygotes or homozygous β-globin mutations. Patients with β-TM usually depend on blood transfusion throughout life because they suffer from severe anemia since infancy. In contrast, patients with β-TI show considerable heterogeneity and may have mild or moderate anemia, and thus have different blood transfusion requirements (Jaing et al., 2021, Taher et al., 2021).

The clinical phenotype of thalassemia ranges from asymptomatic to fatal hemolytic anemia. So far, studies have shown that hematopoietic stem cell transplantation (HSCT) can cure thalassemia. Due to family economic conditions, post-transplant responses, and donor sources, a large number of patients still choose to receive long-term, massive blood transfusion therapy to inhibit the production of erythropoietin, reduce the incidence of skeletal deformities, and maintain the normal growth and development of patients with TM (De Simone et al., 2022). For that matter, it is significant to implement the genetic testing of thalassemia in the population of childbearing age and prenatal diagnosis for high-risk groups of thalassemia in the first and second trimesters to prevent the birth of the fetus with TM. As of May 2022, more than 948 mutant forms of the β-gene and 827 mutant forms of the α-gene have been identified, which are described in detail in the HbVar database (https://globin.bx.psu.edu/)

According to investigation, the Hakkas with unique genetic characteristics are considered Han Chinese people that primarily live in southern China. Many studies have shown significant genetic heterogeneity among Hakka people in different regions (Zhao et al., 2018; Ma et al., 2021). As one of the primary residences of the Hakkas, Heyuan City is situated in the northern mountainous area of Guangdong Province, China (Figure 1). Knowingly, the occurrence of thalassemia in Guangdong Province is so high. However, the prevalence and molecular characterization of α-thal and β-thal mutations among Hakka people in Heyuan so far have not been reported.

Figure 1 - . Geographic location of Heyuan city in Guangdong province.

Figure 1 -

In this study, we retrospectively performed a survey on thalassemia genotypes among the Hakka population in Heyuan. This study aims to reveal the prevalence and molecular characterization of α- and β-thal mutations among Hakka people, provide the scientific basis for the prevention and control of thalassemia, and construct a detailed frequency map of the spectrum of thalassemia mutation in Heyuan. This study will provide comprehensive data on the prevalence of thalassemia in Heyuan, providing a valuable reference for the government to formulate thalassemia prevention and control policies.

Material and Methods

Study population

From October 2010 to August 2020, a total of 25,437 participants who came to the Heyuan Women and Children Hospital carried out α-thal and/or β-thal genetic testing. We eliminated 118 patients who were repeatedly tested in the inpatient or outpatient department. The age of the patients varied from a few days to 91 years old (median age: 24 years), and all the participants or their families obtained informed consent. This study was endorsed by the Medical Ethics Committee of the Heyuan Women and Children Hospital.

Hematological analysis

The blood samples were obtained from the peripheral venous system of all subjects, which were collected in an anticoagulation tube containing ACD or EDTA-k2. Routine hematological examinations were performed using a hemocytometer (Sysmex XS-1800i, Japan). A capillary electrophoresis system (Sebia, France) was applied to analyze the levels of hemoglobin components. The subjects who met the following criteria were considered as suspected carriers of thalassemia and checked for further genetic analysis: (1) mean corpuscular volume (MCV) <82 fL and/or mean corpuscular hemoglobin (MCH) <27 pg; (2) HbA2 <2.5% or HbA2 >3.5% or HbF >2.0%; (3) abnormal haemoglobin zone; (4) parents or siblings carried the thalassemia gene mutation (Huang et al., 2019; Yang et al., 2019; Cai et al., 2021).

DNA extraction and molecular analysis

The genomic DNA of suspected thalassemia subjects was obtained by the extraction kit (Zee san, China) and stored at -20 °C for subsequent tests. The concentration and purity of DNA were assessed by the NanoDrop 2000c UV-Vis spectrophotometer (Thermo Fisher, USA). The protocols are strictly following the manufacturer’s instructions. The deletion of α-thal mutation (--SEA/, -α4.2/, and -α3.7/) was tested by Gap-PCR. The PCR-RDB technique was applied to test the non-deletion α-thal mutations (αCSα/, αQSα/ and αWSα/), and 17 types of β-thal mutations, including IVS-Ⅱ-654(C>T), CD71-72(+A),CD17(A>T), CD43(G>T), -28(A>G), CD41-42(-TCTT), -29(A>G),βE (CD26,G>A), CD14-15(+G), -30(T>C), CAP(-AAAC), -32(C>A), CD27-28(+C), CD31(-C), IVS-Ⅰ-5(G>C), Int(ATG>AGG) and IVS-Ⅰ-1(G>A, G>T). The genetic analysis was done by commercial kits (Yaneng, Shenzhen, China), according to the manufacturer’s instructions (Munkongdee et al., 2020; Wang et al., 2021; Zhuang et al., 2021). Hkαα/-- SEA and Hkαα/αα was detected by nested PCR which was confirmed by Shenzhen Yaneng Biotechnology Co. Ltd.

Statistical analyses

We used SPSS19.0 (IBM, USA) and Excel (Microsoft, USA) software to analyze the data. We used n% to express the constituent ratio. P<0.05 was used for a statistical cut-off.

Results

Genetic analyses of α-thal and β-thal

In the Heyuan region, the number of 25,437 suspected thalassemia subjects has further been indicated for genetic analysis of the thalassemia according to the effects of hematological analysis. Genetic studies revealed that 44.09% (11216/25437) subjects carried thalassemia variations, including 30.85% (7847/25437) with α-thal changes alone, 11.50% (2924/25437) with β-thal changes alone, and 1.75% (445/25437) subjects with both α-thal and β-thal mutations. In addition, 14221 cases (55.91%, 14221/25437) with thalassemia mutation were not found in the detection range.

Distribution of α-thal and β-thal genotypes

As shown in Table 1, 23 genotypes were found in the 7847 α-thal carriers, among which the five common genotypes were --SEA/αα, -α3.7/αα, -α4.2/αα, αCSα/αα, --SEA/-α3.7, respectively, accounting for 68.34% (5363/7847), 16.44% (1290/7847), 6.38% (501/7847), 2.15% (169/7847), 2.14% (168/7847). There were 269 patients with Hb H among the 7847 α-thal carriers, including 217 patients of deletion Hb H and 52 patients of non-deletion Hb H. Interestingly, we detected six cases of the rare α-thal mutation, including two cases of HKαα/αα and four cases of HKαα/--SEA.

Table 1. Distribution of α-thal genotypes in Heyuan.

Types Phenotypes Genotypes Total Cases Frequency (%)
‘Silent’α-thal α+ 3.7/αα 2147 1290 16.44%
α+ 4.2/αα 501 6.38%
α+ αCSα/αα 169 2.15%
α+ αWSα/αα 132 1.68%
α+ αQSα/αα 55 0.70%
α-thal trait α0 --SEA/αα 5425 5363 68.34%
α++ 3.7/-α3.7 26 0.33%
α++ 4.2/-α3.7 16 0.20%
α++ 3.7WSα 6 0.08%
α++ 4.2/-α4.2 5 0.06%
α++ 3.7CSα 2 0.03%
α++ --α4.2CSα 2 0.03%
α++ αWSα/αWSα 2 0.03%
α++ 4.2QSα 1 0.01%
α++ --α4.2WSα 1 0.01%
α++ αQSα/αWSα 1 0.01%
Hb H α0+ --SEA/-α3.7 269 168 2.14%
α0+ --SEA/-α4.2 49 0.62%
α0+ --SEACSα 26 0.33%
α0+ --SEAWSα 23 0.29%
α0+ --SEAQSα 3 0.04%
the rare α-thal mutation α0+ HKαα/ --SEA 6 4 0.05%
α+ HKαα/αα 2 0.03%
Total 7847 100%

Among the 17 mutation sites of β-globin genes, we detected 13 kinds of mutation loci except for -30 (T>C), IVS-Ⅰ-5 (G>C), -32 (C>A), CD31 (-C). We found 29 kinds of genotypes, including 13 heterozygous (98.22%), 12 compound heterozygotes (1.33%), and four homozygotes (0.44%). βCD41-42N is the top common genotype, accounting for 36.22% of the 2942 β-thal carriers, followed by βIVS-Ⅱ-654N(30.88%), β-28N(13.47%), βCD17N(8.93%), βEN(2.63%). Other genotypes were observed in less than 2% of β-thal carriers (Table 2).

Table 2 - . Distribution of β-thal genotypes in Heyuan.

Types Phenotypes Genotypes Total Cases Frequency (%)
β-TT β0N βCD41-42N 2872 1059 36.22%
β+N βIVS-Ⅱ-654N 903 30.88%
β+N β-28N 394 13.47%
β0N βCD17N 261 8.93%
β+N βEN 69 2.36%
β0N βCD14-15N 52 1.78%
β0N βCD27-28N 52 1.78%
β0N βCD71-72N 29 0.99%
β+N β-29N 20 0.68%
β+N βCAPN 18 0.62%
β0N βCD43N 8 0.27%
β0N βIVS-Ⅰ-1N 5 0.17%
β0N βIntN 2 0.07%
β-TI β++ βIVS-Ⅱ-654-28 7 4 0.14%
β++ β-28-28 2 0.07%
β++ β-28CD26 1 0.03%
β-TM β0+ βCD41-42IVS-Ⅱ-654 45 13 0.44%
β00 βCD41-42CD17 5 0.17%
β00 βIVS-Ⅱ-654IVS-Ⅱ-654 5 0.17%
β0+ βCD41-42CAP 4 0.14%
β00 βCD41-42CD41-42 3 0.10%
β00 βCD17/βCD17 3 0.10%
β0+ βCD41-42E 2 0.07%
β0+ βCD41-42-28 2 0.07%
β0+ βCD17-28 2 0.07%
β0+ βCD27-28-28 2 0.07%
β0+ βCD43IVS-Ⅱ-654 2 0.07%
β0+ βCD14-15-28 1 0.03%
β0+ βCD17IVS-Ⅱ-654 1 0.03%
Total 2924 100%

Distribution of composite α-thal and β-thal mutation

In total, we determined 55 genotypes in the 445 subjects with composite α-thal and β-thal variations (Table 3). The top five genotypes of αβ-thalassemia were --SEA/αα combined with βCD41-42N(21.12%), --SEA/αα combined with βIVS-Ⅱ-654N(17.98%), --SEA/αα together with β-28N(9.66%), -α3.7/αα together with βCD41-42N(7.64%), -α3.7/αα together with βIVS-Ⅱ-654N(5.39%). The other 48 genotypes of α-thal combined with the β-thal mutation were infrequent, and the frequency does not exceed 5.0%. As shown in Table 3, the β-globin gene mutation (βCD41-42N, βIVS-Ⅱ-654N, β-28N, βCD17N) combined with the α-globin gene (--SEA/αα, -α3.7/αα, -α4.2/αα) made up of 78.20% of genotypes of αβ-thalassemia.

Table 3 - . Distribution of composite α-thal and β-thal in Heyuan.

β‐thalassemia variations α‐thalassemia variations Total
--SEA/αα 3.7/αα 4.2/αα αWSα/αα --SEA/-α3.7 αCSα/αα --SEA/-α4.2 αQSα/αα 3.7/-α3.7 HKαα/--SEA
βCD41-42N 94 34 13 7 4 3 1 1 1 1 159
βIVS-Ⅱ-654N 80 24 11 9 4 1 0 2 1 0 132
β-28N 43 17 2 2 2 0 0 0 0 66
βCD17N 17 11 2 2 1 1 0 0 0 0 34
βCD14-15N 5 4 2 0 0 0 0 0 0 0 11
βEN 11 3 0 0 1 0 3 0 0 0 18
βCD27-28N 2 2 1 1 0 0 0 0 0 0 6
βCAPN 4 0 0 0 0 1 0 0 0 0 5
βCD71-72N 1 1 1 0 0 0 0 0 0 0 3
β-29N 2 0 0 0 0 0 0 0 0 0 2
βIntN 1 0 0 0 0 0 0 0 0 0 1
β-28IVS-Ⅱ-654 1 0 0 0 0 0 0 0 0 0 1
βCD41-42IVS-Ⅱ-654 1 0 0 0 0 0 0 0 0 0 1
βIVS-Ⅰ-1N 1 0 0 0 0 0 0 0 0 0 1
βIVS-Ⅱ-654CAP 1 0 0 0 0 0 0 0 0 0 1
βCD41-42-28 1 0 0 0 0 0 0 0 0 0 1
βCD43N 1 0 0 0 0 0 0 0 0 0 1
β-28CD14-15 0 1 0 0 0 0 0 0 0 0 1
βCD17IVS-Ⅱ-654 0 1 0 0 0 0 0 0 0 0 1
Total 266 98 32 21 12 6 4 3 2 1 445

Allele frequencies of α-thal and β-thal mutations

The allele frequencies of α-globin gene variation are shown in Table 4. The results revealed that 8646 chromosomes with α-thal gene variation were detected, including six α-thal gene mutations. For these mutations, the top rates of α-thal gene mutation were --SEA, accounting for 68.46% of all α-thal variation chromosomes, followed by -α3.7(19.06%), -α4.2(7.12%), αCSα(2.37%), αWSα(2.17%), αQSα(0.73%) and HKαα(0.08%). There were 3426 chromosomes with β-thal gene variation, including 13 β-thal gene variation. For these mutations, the top rates of β-thal gene mutation were CD41-42(-TCTT)(36.54%), followed by IVS-II-654(C>T)(31.20%), -28(A>G) (13.98%), CD17 (A>T) (9.05%), βE (CD26,G>A) (2.60%), CD14-15(+G) (1.90%), CD27-28(+C) (1.75%), CD71-72(+A) (0.93%), CAP(-AAAC) (0.82%), -29(A>G) (0.64%), CD43(G>T) (0.32%), IVS-Ⅰ-1(G>T, G>A) (0.18%), and Int(ATG>AGG) (0.09%) (Table 4).

Table 4 - . Allele frequencies of α-thal/β-thal mutations in Heyuan.

Type Mutation Phenotype Allele (n) Allele Frequency (%)
α-thal --SEA α0 5919 68.46
3.7 α+ 1648 19.06
4.2 α+ 616 7.12
αCSα α+ 205 2.37
αWSα α+ 188 2.17
αQSα α+ 63 0.73
HKαα α+ 7 0.08
Total 8646 100
β-thal CD41-42(-TCTT) β0 1252 36.54
IVS-Ⅱ-654(C>T) β+ 1069 31.20
-28(A>G) β+ 479 13.98
CD17(A>T) β0 310 9.05
βE (CD26, G>A) β+ 89 2.60
CD14-15(+G) β0 65 1.90
CD27-28(+C) β0 60 1.75
CD71-72(+A) β0 32 0.93
β-29(A>G) β+ 22 0.64
CAP(-AAAC) β+ 28 0.82
CD43(G>T) β0 11 0.32
IVS-Ⅰ-1(G>T, G>A) β0 6 0.18
Int(ATG>AGG) β0 3 0.09
Total 3426 100

Discussion

This is the first large-scale research to assess the prevalence and molecular properties of thalassemia mutation among Hakka people in Heyuan. We discovered that the total incidence of thalassemia mutation carriers was 44.09%, including 30.85% subjects of α-thal variation alone, 11.50% subjects of β-thal variation alone, and 1.75% subjects of both of them. It is much higher than that of the neighboring regions Shaoguan (Ma et al., 2021) and Meizhou (Zhao et al., 2018). There were significant statistical differences between the three regions which are located in Guangdong province (P<0.01). Some possible reasons may explain this difference. It may be because, firstly, we selected the subjects who were primarily suspected of thalassemia, while the subjects were used for routine health examination in other studies. Besides, ethnic differences are also noted. In Shaoguan and Meizhou, ethnic minorities such as Yao people and She people are included (Zhao et al., 2018; Ma et al., 2021). In our study, only the Hakka people of Han nationality are studied.

Our studies indicated that the five prominent genotypes in the 23 identified genotypes were --SEA/αα, -α3.7/αα, -α4.2/αα, αCSα/αα, and --SEA/-α3.7, which are composed of 95.45% of all the α-thal mutation carriers. It is similar to the situation in the Hakka people of Meizhou, which is adjacent to Heyuan. This is also consistent with the --SEA mutation which is commonly found in thalassemia variants in the Southeast. Whereas, αQSα/αα had a low detection rate in the non-deletion α-thal mutations, which was consistent with the previous study in Guangxi province (Lai et al., 2017; He et al., 2017; He et al., 2018). Compatible with the overall detection of α-thal genotype, --SEA, -α3.7, -α4.2, αCSα are the top allele frequencies of α-thal mutations in Heyuan.

A large amount of data shows that there are great differences of β-thal mutations in different regions and different races. IVS1-5 (G > C) and CD41/42 (-TTCT) are the most commonest in South Asia and Southeast Asia, respectively. In Heyuan, the detection of 29 genotypes and 13 kinds of mutation loci displayed the molecular characterization of β-thal among the Hakkas people. The typical five genotypes are βCD41-42N(36.22%), βIVS-Ⅱ-654N(30.88%), β-28N(13.47%), βCD17N(8.93%), and βEN(2.36%), which were compatible with gene frequencies of β-thal mutations in Heyuan. βCD41-42N is the top common genotype, which was analogous to the research published in the Guangxi provinces (Lai et al., 2017; He et al., 2018). Nevertheless, βIVS-Ⅱ-654N is the foremost common β-thal variation in other regions, such as Meizhou (Zhao et al., 2018), and the Chaoshan region (Zheng X et al., 2016) of Guangdong provinces, Hubei provinces (Zhu et al., 2020). It is worth noting that the Hakka people are the main subjects studied in Heyuan and Meizhou, but the results of β-thal mutation are different. This needs further research to verify.

Additionally, up to 445 subjects with composite α-thal and β-thal variations were detected in our study, including 16 with Hb H disease compound β-thal. But in another Hakka region (Zhao et al., 2018), among the 148 cases of composite α-thal and β-thal variations, only two examples were Hb H disease compound β-thal. We also detected seven cases of HKαα mutation, including six subjects of heterozygous mutation and one subjects of HKαα compound β-thal. The above results suggested that all patients of β-thal carriers should be carefully screened for α-thalassemia to obtain the correct genotype, and to carry out proper risk assessment and consultation, especially during prenatal diagnosis.

Building on our results, the pressure of prevention and control for thalassemia in Heyuan should not be underestimated. Heyuan is a relative poverty-stricken mountainous region in Guangdong province. According to data from the People’s Government of Heyuan in 2020 (http://www.heyuan.gov.cn/), the per capita disposable income of urban residents and the per capita disposable income of rural residents are ¥2,8018.2 and ¥1,7313.4, respectively. Patients with β-TM need regular red blood cell transfusion and iron chelation therapy to maintain their lives, but the annual cost is about ¥10,000. Another issue is that due to the high frequency of --SEA thalassemia in Heyuan, Hb Bart’s hydrops fetalis is harmful to the mother.

According to our data, there are certain peculiarities about molecular characteristics of thalassemia gene variation among the Hakka population in Heyuan. It may have something to do with the Hakka, who fuse the genetic aspects of the Han people in both northern and southern China (Zheng L et al., 2013). Although we have obtained some exciting discoveries in our research, there are still some shortcomings. Firstly, the major limitation of this study are the diagnostic capabilities for rare thalassemia types are insufficient apart from HKαα. With the development of technology, it will be possible to fully apply molecular diagnostic technology to discover unique kinds of thalassemia. On the other hand, we just retrospectively assessed the molecular characteristics of genetic testing for thalassemia, without prenatal diagnosis and its follow-up. In the future, we should strengthen the analysis of additional clinical data to provide a more dependable reference for clinical consultation.

In conclusion, this study has indicated that --SEA/αα and βCD41-42N are the most frequent genotypes of α- and β-thal mutations among Hakka people in Heyuan, respectively. Besides, this research has displayed that the types of thalassemia mutations among the Hakka population in Heyuan have a high degree of heterogeneity and broad-spectrum. These greatly enriched the spectrum of thalassemia mutation in Chinese people. These results have important practical significance for carrying out effective clinical consultation and preventing the occurrence of TM in the Heyuan region.

Acknowledgments

We acknowledge that there is no funding for this research. We thank all the research subjects and their families for their cooperation in this research.

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