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PLOS One logoLink to PLOS One
. 2022 Nov 3;17(11):e0277230. doi: 10.1371/journal.pone.0277230

Bacterial isolates, their antimicrobial susceptibility pattern, and associated factors of external ocular infections among patients attending eye clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia

Zewodie Haile 1,2, Hylemariam Mihiretie Mengist 2,*, Tebelay Dilnessa 2,*
Editor: Ivone Vaz-Moreira3
PMCID: PMC9632921  PMID: 36327266

Abstract

Background

External eye infection caused by bacteria can lead to reduced vision and blindness. Therefore, pathogen isolation and antimicrobial susceptibility testing are vital for the prevention and control of ocular diseases.

Objective

The main aim of this study was to assess bacterial isolates, their antimicrobial susceptibility pattern, and associated factors of external ocular infection (EOI) among patients attended eye clinic at Debre Markos Comprehensive Specialized Hospital (DMCSH), Northwest Ethiopia.

Methods

We conducted a cross-sectional study in patients with external ocular infections from January 1, 2021, to June 30, 2021, at DMCSH. Socio-demographic and clinical data were collected using semi-structured questionnaires. Following standard protocols, external ocular swabs were collected and inoculated onto blood agar, chocolate agar, MacConkey agar and mannitol salt agar (MSA). Finally, bacterial isolates were identified by Gram stain, colony morphology, and biochemical tests. Antimicrobial susceptibility testing was done by using the modified Kirby-Bauer disk diffusion technique according to Clinical and Laboratory Standards Institute (CLSI) guideline. Cleaned and coded data were entered into EpiData version 4.2 software and exported to Statistical Packages for Social Sciences (SPSS) version 22 for analysis. Bivariate logistic regression was applied to investigate the association between predictors and outcome variables. P-values ≤ 0.05 with 95% confidence interval were considered statistically significant.

Results

Two hundred seven study participants were enrolled in this study. More than half of them (57.5%, 119/207) were males, and 37.7% (78/207) of them were ≥ 65 years old. A total of 130 (62.8%) bacterial isolates were identified, with Gram-positive bacteria accounting for 78.5% (102/130) of the isolates. Staphylococcus aureus was the most common isolate with a 46.2% (60/130) prevalence. Ciprofloxacin was comparatively effective against Gram-positive and Gram-negative bacteria. The prevalence of culture-confirmed bacteria was significantly associated with age groups 15–24 (AOR: 9.18, 95%CI: 1.01–82.80; P = 0.049) and 25–64 (AOR: 7.47, 95%CI: 1.06–52.31; P = 0.043). Being farmer (AOR: 5.33, 95% CI: 1.04–37.33; P = 0.045), previous history of eye surgery (AOR: 5.39, 95% CI: 1.66–17.48; P = 0.005), less frequency of face washing (AOR: 5.32, 95% CI: 1.31–7.23; P = 0.010) and face washing once a day (AOR: 3.07, 95% CI: 1.13–25.13; P = 0.035) were also significantly associated with the prevalence of culture-confirmed bacteria.

Conclusion

The prevalence of culture-confirmed bacteria among patients with EOI was high in the study area. A considerable proportion of bacterial isolates exhibited mono and/or multi-drug resistance. Age (15–64 years), being farmer, previous history of eye surgery and less frequency of face washing were significantly associated with the prevalence of culture-confirmed bacteria. Bacterial isolation and antibiotic susceptibility testing should be routinely performed in the study area to combat the emergence of antibiotic resistance.

Introduction

Understanding the health of the eyes is vital due to many factors. Several factors including, but not limited to, dust, high temperature, and microorganisms are factors associated with the occurrence of various eye diseases that can lead to blindness [1]. Besides, changes in the ocular microbiota are associated with ocular diseases [2]. Pathogenic microorganisms cause external ocular disease due to the virulence of microorganisms and the hosts’ reduced resistance. Hosts’ reduced resistance results from different factors like living conditions, socio-economic status, decreased immune status, chemotherapy, chronic diseases, and malnutrition. Bacteria are the major contributor to ocular infections worldwide [3]. The World Health Organization (WHO) recognizes corneal diseases as the major cause of vision loss second to cataracts, and an emerging cause of visual disability and blindness worldwide [4,5].

External ocular bacterial infections can cause a series of signs and symptoms such as the formation of pus, conjunctival hyperemia, lid edema, and even visual impairment. The causative bacteria may come from the outside environment or endogenously transported by blood. Normal flora can also cause infection, especially when they enter the aqueous humor or vitreous fluid [6]. Modification of normal flora in the conjunctiva and eyelid also contribute to ocular infections [7].

External ocular infection can be monomicrobial or polymicrobial. It is associated with many factors including contact lenses, trauma, surgery, age, dryness of the eye, and chronic nasolacrimal duct obstruction [8]. Some bacteria are part of the normal microbial flora in the conjunctiva and eyelids [9]. Bacterial infections contribute up to 74% of ocular infections globally. Studies reported that Staphylococci are the leading causes of external ocular infections worldwide [10] among Gram-positive bacteria, while Pseudomonas aeruginosa, Klebsiella pneumoniae, and Escherichia coli are the major Gram-negative bacteria isolated from external ocular infections [11].

The most common external ocular infections that may lead to blindness include conjunctivitis, blepharitis, dacryocystitis, keratitis, orbital, and periorbital cellulitis [11,12]. Conjunctivitis (red-eye) is the inflammation of the conjunctiva, and bacterial conjunctivitis could be characterized by the presence of mucopurulent discharge and conjunctival hyperemia [13]. Acute bacterial conjunctivitis is a common and a highly contagious infection in children and is usually treated empirically with broad-spectrum topical antibiotics [14].

Bacterial conjunctivitis is more common in young children and the elderly than in other age groups. The most common pathogens in bacterial conjunctivitis are S. aureus and Streptococcus pneumoniae. Other bacteria including S. epidermidis, viridans streptococci, E. coli, P. aeruginosa, and Proteus mirabilis had been isolated less frequently from bacterial conjunctivitis [15]. Keratitis is an inflammation of the cornea which may lead to corneal ulcer and corneal blindness [16,17] whereas blepharitis is an inflammation of the eyelid that can cause loss of eyelash. This infection may not remain localized and is known to spread to other anatomical sites of the eyes [11]. Additionally, dacryocystitis is also a clinical condition characterized by inflammation of the lacrimal sac, which usually occurs because of obstruction of the nasolacrimal duct [18,19]. It may also be related to a malformation of the tear duct, injury, eye infection, or trauma [20].

There is a globally high prevalence of antimicrobial-resistant Staphylococcus species among external ocular pathogens. Antimicrobial resistance to most groups of antimicrobials is increasing with a decline in the effectiveness of many commonly used topical antimicrobials [16]. The management of bacterial eye infections may involve treatment with broad-spectrum antibiotics. The use of broad-spectrum antibiotics leads to the development of resistance to the commonly prescribed drugs. The emergence of bacterial resistance towards topical antimicrobial agents may increase the risk of treatment failure [21]. Therefore, up-to-date information is essential for appropriate antimicrobial therapy and management of external ocular infections [22]. In Ethiopia, external ocular infections caused by bacteria are important public health problems [23,24]. However, there is a paucity of published data about the spectrum of bacteria and their antimicrobial susceptibility patterns among external ocular infected patients in the study area. Here, we hypothesized that the bacterial profile, their antimicrobial susceptibility pattern, and associated factors of external ocular infections in DMCSH could be the same with previous similar studies conducted in Ethiopia. This study assessed the bacterial causes of EOI, their antimicrobial susceptibility pattern, and associated factors among patients attended the eye clinic of DMCSH, Northwest Ethiopia.

Materials and methods

Study area and setting

The study was conducted among EOI suspected patients at DMCSH, which is found in Debre Markos town, the capital of East Gojjam zone in Amhara National Regional State, Northwest Ethiopia. DMCSH is the only tertiary hospital providing health care services for over four million inhabitants of East Gojjam and West Gojjam zones and the surrounding areas. In addition, it is the only hospital with an independent tertiary eye clinic that provides both outpatient and inpatient services. All cases requiring tertiary care service in the area are referred to DMCSH. Besides, it has also a high patient flow as the eye clinic provides medical service for an average of 21,000 patients per year of which about 4,151 of them are clinically diagnosed as EOI. Moreover, it is the only hospital in the area providing bacterial culture and antimicrobial susceptibility testing services. Due to these reasons, DMCSH was selected as the only study site.

Study design and period

A hospital-based cross-sectional study was conducted from January 01, 2021, to June 30, 2021.

Source population

All patients who visited the eye clinic of DMCSH were the source population.

Study population

All patients suspected of EOI visiting the eye clinic of DMCSH during the study period were the study populations.

Eligibility

All EOI suspected patients except those taking and/or took antibiotics within the past two weeks and patients with acute physical eye injury were excluded from the study.

Sample size determination and sampling technique

The sample size was determined by using a single population proportion formula considering 95% CI, 5% marginal error, and a 58.3% prevalence of EOI from a previous study conducted at Gondar Teaching Hospital, Northwest Ethiopia in 2017 [16].

n=pq(zα2d)2

Where n = sample size, p = 58.3%, q = 1-p = 0.417, d = margin of error that can be tolerated, 5% (0.05), Z = level of 95% confidence interval (1.96). Using the above formula, the sample size was calculated to be 376. However, the average daily flow rate of EOI in the eye clinic of the hospital was 15 and the study was conducted for 3 months with 22 working days each month making a total of 990 patients visiting the eye clinic. Since the total population size i.e., 990 was below 10000, we applied a sample size correction. Considering this, the final sample size was calculated as follows; N final = n/ (1+n/N) = 188. After considering 10% non-response, a total of 207 study participants were enrolled using a consecutive convenient sampling technique.

Data collection

Demographic data (age, sex, monthly income, educational status, occupation, and residence) and ophthalmic clinical data (use of traditional medicine, history of eye trauma, history of eye surgery, frequency of face washing and presence of systemic disease) were collected using structured questionnaires, and physical examinations. Ocular specimen and interviewer-administered data were conducted by optometrist nurses after two days training. In addition, the clinical characteristics of patients were retrieved from patients’ records. To identify the clinical picture of EOI, all patients were examined using a slit lamp bio-microscope and diagnosed by an ophthalmologist. Then, the specimen was collected from each patient by gently swabbing the eye, the lower conjunctival sac, and lid margins using sterile cotton swabs moistened by saline. Specimen were aseptically obtained from EOI sites before the eye was cleaned with an antiseptic solution and antibiotic use [8]. In case of ulcerative blepharitis, lashes deposit, tear film foaming content and corneal punctuate erosions were swabbed. For dacryocystitis, only the pus was collected on a swab and inoculated onto a culture media. The collected specimens were directly transported to the microbiology laboratory of DMCSH for processing.

Isolation and identification of bacteria

Gram staining was done from each sample for presumptive identification of gram positive and Gram-negative bacteria. The specimens were then inoculated onto blood agar (Oxoid Ltd, Basingstoke, UK) and chocolate agar and then subcultured on MacConkey agar (Oxoid Ltd) and mannitol salt agar (Oxoid Ltd) [9] for selective growth of Gram-negative and Staphylococci. All the inoculated culture media were incubated at 35–37°C for 24 hrs. Additionally, chocolate agar plates were incubated with a 5% CO2 atmosphere. All culture plates were initially examined for growth after 24 hours and cultures with no growth were incubated for further 48 hours. For mixed colonies, a sub-culture on blood agar and chocolate agar was performed to get pure colonies. After obtaining pure colonies, further identification was done by using standard microbiological techniques including Gram stain, morphology characterization, and biochemical tests. Gram-positive cocci were identified by biochemical tests, catalase and coagulase positivity, optochin disk sensitivity, bile sensitivity and bacitracin sensitivity tests. Gram-negative bacteria were identified based on phenotypic characteristics and a series of biochemical tests such as carbohydrate utilization, indole production, mannitol fermentation, citrate utilization, lysine decarboxylation, H2S production, triple sugar iron utilization and motility testing [25].

Antimicrobial susceptibility testing

Antimicrobial susceptibility testing was performed using the modified Kirby-Bauer disk-diffusion technique on Muller Hinton agar (MHA) supplemented with 5% defibrinated sheep blood for fastidious bacterial isolates (Oxoid Ltd) according to CLSI 2021 guideline [26]. Briefly, 3–5 colonies of the test organism were transferred into a tube containing 3 ml of nutrient broth/normal saline and mixed gently until the suspension becomes turbid and adjusted to 0.5 McFarland standards. Nutrient broth and normal saline were used to standardize the approximate number of bacteria with 0.5 McFarland standards in the Kirby-Bauer disk diffusion method. The suspension was swabbed uniformly onto MHA agar entirely by rotating the plate 60 degrees between streak for non-fastidious organisms, and MHA with defibrinated sterile 5% sheep blood for fastidious organisms. For Gram-positive bacteria, discs impregnated with antimicrobials ampicillin (10μg), chloramphenicol (30μg), gentamicin (10μg), tetracycline (30μg), trimethoprim/sulfamethoxazole (1.25/23.75μg), ciprofloxacin (30μg), ceftriaxone (30μg), clindamycin (2 μg), doxycycline (30 μg), erythromycin (15μg), penicillin (10U), and cefoxitin (30μg) (Oxoid Ltd) were used. The methicillin resistance pattern of S. aureus and coagulase negative staphylococci (CoNS) was determined using the cefoxitin (30μg) antibiotic disk diffusion method. S. aureus and CoNS were reported methicillin-resistant when the zone of inhibition was ≤21 and ≤24 mm while methicillin-sensitive when the zone of inhibition was ≥22 mm and ≥25 mm, respectively. Antibiotic discs gentamicin (10μg), amikacin (30μg), ceftazidime (30μg), tetracycline (30μg), trimethoprim/sulfamethoxazole (1.25/23.75μg), ciprofloxacin (30μg), meropenem (10μg), imipenem (10μg), ampicillin (10μg), ceftriaxone (30μg), amoxicillin-clavulanic acid (20μg), and ciprofloxacin (30μg) (Oxoid Ltd and HiMEDIA LLC, Pennsylvania, USA) were used to assess the antimicrobial susceptibility pattern of Gram-negative bacteria. The zone of inhibition around the antimicrobial discs was measured to the nearest millimetre using a graduated calliper. Finally, the isolates were classified as sensitive, intermediate, and resistant to the tested drugs according to CLSI 2021 guideline [26].

Data quality control

The questionnaire was prepared in English and translated into Amharic which was then translated back to English for consistency. The filled questionnaires were daily checked for completeness. Standardized procedures were used for specimen collection and the collected specimens were processed within 6 hours of collection after appropriate preservation. The quality of culture media and the expiry date of reagents was checked before performing each test. Culture media were prepared aseptically by autoclaving and 5% of each batch was checked for sterility through overnight incubation at 37°C. Quality and performance of the culture media and antibiotics were also checked by inoculating standard bacterial strains of S. aureus ATCC® 25923, E. coli ATCC® 25922, P. aeruginosa ATCC® 27853, and S. pneumoniae ATCC® 49619.

Data analysis and interpretations

Data were cleaned, coded, and entered EpiData version 4.2 software and exported to SPSS version 22 software for analysis. Descriptive statistics were used to summarize data while bivariate logistic regression was applied to determine the association between predictors and outcome variables with a 95% confidence interval. Variables with a P-value ≤0.25 in the crude analysis were subjected to adjusted analysis through multivariate logistic regression with a 95% confidence interval to control confounding factors. P-values ≤ 0.05 were considered statistically significant. Results were presented by using graphs and tables based on the type of data.

Ethical consideration

The study was conducted after it was ethically approved by the Research and Ethical Review Committee of the College of Health Sciences, Debre Markos University (Protocol Number: DMU/CHS/RERC/65/2020). Written assent of care givers/guardians (for participants below 18 years old) and consent (for adults) were obtained before data collection. All the information obtained from the study participants was coded to keep confidentiality. Test results were communicated with the clinicians of the eye clinic for appropriate interventions.

Operational definitions

Ocular infection: Eye infections occurring when harmful microorganisms, bacteria, fungi, and viruses invade any part of the eyeball or the surrounding area [27].

External ocular infection: Eye infections occurring at the outer part of the eye including infectious diseases of the lids, conjunctiva, cornea, and lacrimal apparatus [28].

Prevalence of culture-confirmed bacteria: This indicates the prevalence of bacteria isolated from EOI patients using the routine culture method. This bacterial prevalence represents only aerobic/facultative anaerobic bacteria and bacteria not requiring special media for growth.

Acute physical eye injury: A physical eye injury that occurs within 24 hours [29].

More frequent face washing: Face washing two or more times per day with soap and water.

Face washing once a day: Face washing once a day with soap and water.

Less frequent face washing: Face washing occasionally less than once a day using soap and water.

Multi-drug resistance (MDR): Bacteria that resist more than one drug in three or more classes of antimicrobial drugs [30].

Systemic disease: The diseases of the eye that directly or indirectly result from a disease process originating from another part of the body [31].

Results

Socio-demographic and clinical features of the study participants

Two hundred seven study participants clinically diagnosed with EOI were included in the study. Of the study participants, 57.5% (119/207) were males. The age of the study participants ranged from one year to 88 years with a median value of 59 years. The study participants in the age group of ≥ 65 years accounted for 37.7% (78/207). About 75.8% (157/207) of the study participants were rural residents, 50.2% (104/207) were farmers, 65.2% (135/207) were married and 76.3% (158/207) were illiterates (can’t read and write) (Table 1).

Table 1. Prevalence of culture-confirmed bacteria stratified by socio-demographic characteristics of the study participants at DMCSH, Northwest Ethiopia, 2021.

Variables Frequency, N (%) Culture positive, N (%)$
Sex Male 119(57.5) 77(64.7)
Female 88(42.5) 53(60.2)
Age in year ≤14 12(5.8) 5(41.7)
15–24 52(25.1) 26(50)
25–64 67(32.4) 42(62.7)
≥65 78(37.7) 57(73)
Marital status Married 135(65.2) 91(67.4.0)
Single 37(17.9) 17(45.9)
Widowed 20(9.7) 14(70)
Divorced 15(7.2) 8(53.3)
Resident Urban 50(24.2) 27(54)
Rural 157(75.8) 103(65.6)
Educational status of participants Read and write 49(23.7) 26(53)
Not read and write 158(76.3) 104(65.8)
Occupations Civil servant 19(9.2) 6(31.6)
Farmer 104(50.2) 72(69.2)
Merchant 6(2.9) 5(83.3)
Housewife 34(16.4) 22(64.7)
Daily laborer 3(1.4) 2(66.7)
Others 41(19.8) 23(56)

Key: $ = Proportion is calculated using the number of study participants in each category as a denominator.

Most patients with EOI were diagnosed with blepharitis and conjunctivitis with a respective prevalence of 46.9% (97/207) and 27.5% (57/207). Blepharitis was more common in males (58.4%) and in the age group of ≥65 years (38.6%) while dacryocystitis was more prevalent in females (85.7%) and in the age group of 15–24 years (57.1%). Hordeolum was reported only in the age group of 15–24 years, and it was more prevalent in females (66.7%). Besides, conjunctivitis and blepharoconjunctivitis were more prevalent in males (59.6%, 53.3%) and in the age group of ≥65 years (42.1%, 53.3%). Other EOIs were more common in males (67.9%) and in the age group of 15–24 years (39.3%) (Fig 1).

Fig 1.

Fig 1

Distribution of external ocular infection among patients stratified by gender (A) and age group (B) at DMCSH, Northwest, Ethiopia.

Prevalence of bacterial isolates

The overall prevalence of culture-confirmed bacterial isolates was 62.8% (130/207) with a 95% CI of 56.0–69%. Mixed bacterial isolates were not found in a single sample in this study. Among the isolates, 78.5% (102/130) were Gram-positive. S. aureus was the predominant Gram-positive bacteria accounting for 58.8% (60/102) followed by CoNS with a 26.5% (27/102) prevalence and S. pneumoniae with a proportion of 7.8% (8/102). From Gram-negative isolates, E. coli was the predominant bacterial isolate with a prevalence of 32.1% (9/28) followed by P. mirabilis (21.4%, 6/28). The least isolated bacteria were S. pyogenes from Gram positives (0.98%, 1/102) and P. aeruginosa from Gram negatives (3.6%, 1/28). The prevalence of culture-confirmed bacteria was 64.7% (77/119) in males, 73% (57/78) in age group of ≥65 years, 67.4% (91/135) in married, 65.6% (103/157) in rural residents, 65.8% (104/158) in those unable to read and write (illiterates), and 69.2% (72/104) in farmers (Table 1).

Most of the bacterial isolates were recovered from blepharitis (46.1%, 60/130) followed by conjunctivitis (30%, 39/130) and blepharoconjunctivitis (10%, 13/130) patients. Culture confirmed bacterial prevalence was the least among patients clinically diagnosed with hordeolum with a prevalence of only 2.3% (3/130). The predominant bacterial isolates observed in blepharitis cases were S. aureus (58.3%, 35/60) and CoNS (21.7%, 13/60). Among Gram-negative bacteria, E. coli was predominant in blepharitis patients (5%, 3/60) followed by K. pneumoniae (3.3%, 2/60) and Enterobacter species (3.3%, 2/60) (Table 2).

Table 2. Distribution of culture-confirmed bacterial isolates stratified by type of EOI at DMCSH, Northwest Ethiopia, 2021.

Isolates Clinical diagnosis
Conjunctivitis
N = 57, n (%)
Belphroconjactivitus, N = 15, n (%) Blepharitis
N = 97, n (%)
Dacryocystitis
N = 7, n (%)
Hordeolum N = 3, n (%) Others
N = 28, n (%)
Total
N = 207, n (%)
Gram-positive
S. aureus 14(23.3) 5(8.3) 35(58.3) 2(3.3) 2(3.3) 2(3.3) 60(100)
CoNS 9(33.3) 2(7.4) 13(48.1) 1(3.7) 0(0.0) 2(7.4) 27(100)
S. pneumoniae 2(25) 0(0.0) 3(37.5) 1(12.5) 0(0.0) 2(25) 8(100)
S. pyogenes 0(0.0) 0(0.0) 1(100) 0(0.0) 0(0.0) 0(0.0) 1(100)
S. agalactiae 2(50) 0(0.0) 0(0.0) 0(0.0) 1(25) 1(25) 4(100)
Viridans streptococci 1(50) 1(50) 0(0.0) 0(0.0) 0(0.0) 0(0.0) 2(100)
Sub total 28(27.5) 8(7.8) 52(51.0) 4(3.9) 3(2.9) 7(6.9) 102(100)
Gram-negative
E. coli 5(55.5) 1(11.1) 3(33.3) 0(0.0) 0(0.0) 0(0.0) 9(100)
P. aeruginosa 0(0.0) 0(0.0) 0(0.0) 1(100) 0(0.0) 0(0.0) 1(100)
K. pneumoniae 2(40) 1(20.0) 2(40) 0(0.0) 0(0.0) 0(0.0) 5(100)
P. mirabilis 2(33.3) 1(16.7) 1(16.7) 0(0.0) 0(0.0) 2(33.3) 6(100)
Citrobacter species 0(0.0) 2(66.7) 0(0.0) 0(0.0) 0(0.0) 1(33.3) 3(100)
Enterobacter species 2(50.0) 0(0.0) 2(50) 0(0.0) 0(0.0) 0(0.0) 4(100)
Sub total 11(39.3) 5(4.9) 8(28.6) 1(3.6) 0(0.0) 3(10.7) 28(100)
Total 39(30.0) 13(10.0) 60(46.2) 5(3.8) 3(2.3) 10(7.7) 130(100)

CoNS = Coagulase-negative staphylococci.

Antimicrobial susceptibility patterns of bacterial isolates

The antimicrobial susceptibility pattern of Gram-positive bacterial isolates was tested on twelve antibiotics. A significant number of culture-confirmed bacterial isolates were resistant to one or more antimicrobial agents. Among the isolates, S. aureus showed high sensitivity to ciprofloxacin (83.3%, 50/60) followed by cefoxitin (80%, 48/60) and clindamycin (71.7%, 43/60). But S. aureus was highly resistant to azithromycin (63.3%, 38/60), penicillin (56.7%, 34/60), erythromycin (60.0%, 36/60) and doxycycline (45.0%, 27/60). Based on cefoxitin resistance, the prevalence of methicillin-resistant S. aureus (MRSA) was 20% (12/60). Besides, 25.9% (7/27) methicillin-resistant coagulase-negative staphylococci (MRCoNS) were identified. S. pneumoniae showed high sensitivity to clindamycin (87.5%, 7/8) but highly resistant to penicillin and ceftazidime each accounting for 50% (4/8). S. pyogenes, S. agalactiae, and viridans streptococci were highly sensitive to clindamycin, gentamicin, and chloramphenicol; however, they exhibited resistance to trimethoprim/sulfamethoxazole, doxycycline, and ampicillin. Some Gram-positive bacteria showed intermediate sensitivity to antibiotics (Table 3).

Table 3. Antibiotic susceptibility pattern of culture-confirmed Gram-positive bacteria isolated from EOI patients at DMCSH, Northwest Ethiopia, 2021.

Isolates
(N = 130)
Antimicrobial susceptibility pattern
GM
n(%)
Fox
n(%)
P
n(%)
C
n(%)
SXT
n(%)
AZM
n(%)
CLD
n(%)
CIP
n(%)
CAZ
n(%)
AMP
n(%)
ERY
n(%)
DOX
n(%)

S. aureus
S 40(66.7) 48(80) 18(30) 40(66.7) 39(65) 17(28.3) 43(71.7) 50(83.3) NT NT 15(25.0) 24(40)
I 11(18.3) - 8(13.3) 3(5) 1(1.7) 5(8.3) 1(1.7) 2(3.3) NT NT 9(15.0) 9(15)
R 9(15) 12(20) 34(56.7) 17(28.3) 20(33.3) 38(63.3) 16(26.7) 9(15) NT NT 36(60.0) 27(45)

CoNS
S 15(55.6) 20(74.1) 10(37) 20(74.1) 21(77.8) 8(29.6) 20(74.1) 25(92.6) NT NT 13(48.1) 17(63)
I 6(22.2) - 3(11.1) 4(14.8) 3(11.1) 4(14.8) 2(7.4) 1(3.7) NT NT 10(37) 3(11)
R 6(22.2) 7(25.9) 14(51.9) 3(11.1) 3(11.1) 17(63) 5(18.5) 1(3.7) NT NT 4(14.8) 5(18.5)
S. pneumoniae S 3(37.5) NT 2(25) 5(62.5) 6(75) 5(62.5) 7(87.5) 4(50) 4(50) 4(50) 6(75) 4(50)
I 2(25) NT 2(25) 2(25.0) 2(25) 2(25) 1(12,5) 0(0.0) 0(0.0) 3(37.5) 2(25) 3(37.5)
R 3(37.5) NT 4(50) 1(12.5) 0(0.0) 1(12.5) 0(0.0) 4(50.0) 4(50) 3(37.5) 0(0.0) 1(12.5)

S. pyogenes
S 1(100) NT NT 1(100) NT 1(100) 1(100) 1(100) 1(100) 1(100) NT 1(100)
I 0(0.0) NT NT 0(0.0) NT 0(0.0) 0(0.0) 0(0.0) 0(0.0) 0(0.0) NT 0(0)
R 0(0.0) NT NT 0(0.0) NT 0(0.0) 0(0.0) 0(0.0) 0(0.0) 0(0.0) NT 0(0)

S. agalactiae
S 3(75) 2(50) 3(75) 2(50) 1(25) 2(50) 3(75) 4(100) NT 2(50) 1(25) 2(50)
I 1(25) 2(50) 0(0.0) 2(50) 1(25) 0(0.0) 0(0.0) 0(0.0) NT 1(25) 1(25) 0(0)
R 0(0.0) 0(0.0) 1(25) 0(0.0) 2(50) 2(50) 1(25) 0(0.0) NT 1(25) 2(50) 2(50)

Viridans streptococci
S 2(100) 2(100) 2(100) 2(100) NT NT 1(50) 2(100) 1(50) 2(100) 1(50) 1(50)
I 0(0.0) 0(0.0) 0(0.0) 0(0.0) NT NT 0(0.0) 0(0.0) 0(0.0) 0(0.0) 1(50) 1(50)
R 0(0.0) 0(0.0) 0(0.0) 0(0.0) NT NT 1(50) 0(0.0) 1(50) 0(0.0) 0(0.0) 0(0.0)

CoNS = Coagulase negative staphylococci, S = Sensitive, I = Intermediate, R = Resistance, AMC = Amoxicillin-clavulanic acid, AMP = Ampicillin, CIP = Ciprofloxacin, AK = Amikacin, C = Chloramphenicol, CLD = Clindamycin, TET = Tetracycline, SXT = Trimethoprim/sulfamethoxazole, ERY = Erythromycin, GM = Gentamicin, FOX = Cefoxitin, P = Penicillin, AZM = Azithromycin, CAZ = Ceftazidime, DOX = Doxycycline, NT = Not tested.

Among Gram-negative bacterial isolates, E. coli showed a 100% sensitivity to ciprofloxacin, meropenem, and imipenem (9/9), and a high sensitivity to trimethoprim/sulfamethoxazole as well as amikacin 77.8% (7/9). On the other hand, E. coli demonstrated high resistance to amoxicillin-clavulanic acid and tetracycline each accounting for 44.4% (4/9), and ampicillin and ceftazidime each accounting for 33.3% (3/9).

P. mirabilis showed a 100% sensitivity to ciprofloxacin, amikacin, chloramphenicol, and meropenem. Additionally, this isolate also showed high susceptibility to trimethoprim/sulfamethoxazole 83.3% (5/6), gentamycin, ampicillin, and ceftazidime (each accounting for 66.7% (4/6)). However, P. mirabilis showed less sensitivity to amoxicillin-clavulanic acid, imipenem, and tetracycline (each accounting for 50% (3/6)). P. aeruginosa, K. pneumoniae, and Citrobacter isolates were 100% sensitive to amikacin, imipenem, and ciprofloxacin (Table 4).

Table 4. Antibiotic susceptibility pattern of culture-confirmed Gram-negative bacterial isolates from EOI patients at DMCSH, Northwest Ethiopia, 2021.

Isolates (n = 130) Antimicrobial susceptibility pattern
GM
N(%)
AMK
N(%)
AMC
N(%)
C
N(%)
AMP
N(%)
TET
N(%)
SXT
N(%)
MER
N(%)
IPM
N(%)
CIP
N(%)
CAZ
N(%)
E. coli S 3(33.3) 7(77.8) 5(55.6) 6(66.7) 4(44.4) 4(44.4) 7(77.8) 9(100) 9(100) 8(88.9) 4(44.4)
I 3(33.3) 1(11.1) 0(0.0) 1(11.1) 2(22.2) 1(11.1) 1(11.1) 0(0.0) 0(0.0) 0(0.0) 2(22.2
R 2(22.2) 1(11.1) 4(44.4) 2(22.2) 3(33.3) 4(44.4) 1(11.1) 0(0.0) 0(0.0) 1(11.1) 3(33.3)
P. aeruginosa S 1(100) 1(100) NT NT NT NT NT 1(100) 1(100) 1(100) NT
I 0(0.0) 0(0.0) NT NT NT NT NT 0(0.0) 0(0.0) 0(0.0) NT
R 0(0.0) 0(0.0) NT NT NT NT NT 0(0.0) 0(0.0) 0(0.0) NT
K. pneumoniae S 3(60) 5(100) 2(40) 4(80) 1(20) 3(60) 4(80) 4(80) 5(100) 5(100) 5(100)
I 1(20) 0(0.0) 2(40) 0.(0.0) 2(40.0) 0(0.0) 1(20) 1(20) 0(0.0) 0(0.0) 0(0.0)
R 1(20) 0(0.0) 1(20) 1(20) 2(40) 2(40) 0(0.0) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
P. mirabilis S 4(66.7) 6(100) 3(50) 6(100) 4(66.7) 3(50) 5(83.3) 6(100) 3(50) 6(100) 4(66.7)
I 1(16.7) 0(0.0) 1(16.7) 0(0.0) 0(0.0) 1(16.7) 0(0.0) 0(0.0) 3(50) 0(0.0) 2(33.3)
R 1(16.7) 0(0.0) 2(33.3) 0(0.0) 2(33.3) 2(33.3) 1(16.7) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
Citrobacter species S 1(33.3) 3(100) 1(33.3) 2(66.7) 3(100) 1(33.3) 2(66.7) 3(100) 3(100) 3(100) 1(33.3)
I 2(66.7) 0(0.0) 1(33.3) 1(33.3) 0(0.0) 1(33.3) 1(33.3) 0(0.0) 0(0.0) 0(0.0) 1(33.3)
R 0(0.0) 0(0.0) 1(33.3) 0(0.0) 0(0.0) 1(33.3) 0(0.0) 0(0.0) 0(0.0) 0(0.0) 1(33.3)
Enterobacter species S 2(50) 3(75) 2(50) 2(50) 1(25) 1(25) 4(100) 3(75) 3(75) 3(75) 3(75)
I 1(25) 0(0.0) 1(25) 1(25) 1(25) 2(50) 0(0.0) 0(0.0) 0(0.0) 1(25) 1(25)
R 1(25) 1(25) 1(25) 1(25) 2(50) 1(25) 0(0.0) 1(25) 1(25) 0(0.0) 0(0.0)

S = Sensitive, I = Intermediate, R = Resistance, AMC = Amoxicillin-clavulanic acid, AMP = Ampicillin, CIP = Ciprofloxacin, AK = Amikacin, C = Chloramphenicol, TET = Tetracycline, SXT = Trimethoprim/sulfamethoxazole, GM = Gentamicin, MER = Meropenem, IPM = Imipenem, CAZ = Ceftazidime, NT = Not tested.

Multidrug-resistance patterns of bacterial isolates

Among the total culture-confirmed bacterial isolates (n = 130), 59.2% (77/130) of them demonstrated MDR pattern. Among Gram-positive isolates, 65.7% (67/102) were MDR while only 32.1% (9/28) of the Gram-negative isolates were found to be MDR. S. aureus (63.2%, 43/68) and CoNS (29.4%, 20/68) showed a high percentage of MDR pattern. From Gram-negative isolates, E. coli (55.5%, 5/9) and Enterobacter species (22.2%, 2/9) exhibited a high level of MDR pattern (Table 5).

Table 5. Multidrug resistance patterns of culture-confirmed bacterial isolates from EOI patients at DMCSH, Northwest Ethiopia, 2021.

Isolates
Total MDR patterns
R0 N(%) R1 N(%) R2 N(%) R3 N(%) R4 N (%) ≥R5 N(%)
S. aureus 60 2(3.3) 5(8.3) 10(16.7) 14(23.3) 14(23.3) 16(26.7)
CoNS 27 2(7.4) 2(7.4) 5(18.5) 8(29.6) 8(29.6) 3(11.1)
S. pneumoniae 8 4(50) 1(12.5) 1(12.5) 2(25.0) 0(0.0) 0(0.0)
S. pyogenes 1 1(100) 0(0.0) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
S. agalactiae 4 1(25) 0(0.0) 2(50) 2(50) 1(25) 0(0.0)
Viridans streptococci 2 2(100) 0(0.0) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
E. coli 9 2(22.2) 2(22.2) 0(0.0) 2(22.2) 1(11.1) 2(22.2)
P. aeruginosa 1 0(0.0) 1(100) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
K. pneumoniae 5 1(20) 2(40) 1(20.0) 1(20.0) 0(0.0) 0(0.0)
P. mirabilis 6 2(33.3) 3(50) 0(0.0) 1(16.7) 0(0.0) 0(0.0)
Citrobacter species 3 1(33.3) 2(66.7) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
Enterobacter species 4 0(0.0) 2(50) 0(0.0) 2(50.0) 0(0.0) 0(0.0)
    Total 130 18(13.8) 20(15.4) 19(14.6) 32(24.6) 24(18.5) 2(1.5)

CONS = Coagulase-negative staphylococci, Ro = bacterial isolate sensitive to all antibiotics, R1 = bacterial isolate resistance to one antibiotics, R2 = bacterial isolate resistance to two antibiotics of different classes, R3 = bacterial isolate resistance to three antibiotics of different classes, R4 = bacterial isolate resistance to four antibiotics of different classes, and >R5 = bacterial isolate resistance to five and above antibiotics of different classes.

Factors associated with culture-confirmed bacterial isolates

Different socio-demographic and clinical characteristics of the study participants were assessed for their possible association with the prevalence of culture-confirmed bacterial isolates in patients with EOI. In bivariate logistic regression, rural residence (P = 0.141), age group 15–24 years (P = 0.030), age group 25–64 years (P = 0.043), age groups ≥ 65years (P = 0.037), merchant (P = 0.136), housewife (P = 0.231), farmer (P = 0.082), history of eye surgery (P = 0.001), frequency of face washing once a day (P = 0.020) and less frequency of face washing (P = 0.010) showed statistically significant association with culture-confirmed causes of EOI. After adjusting for confounding factors, age groups of 15–24 and 25–64 years, being farmer, history of eye surgery, less frequency of face washing, and face washing once a day were significant predictors of culture-confirmed bacterial causes of EOI (P < 0.05) (Table 6).

Table 6. Association of socio-demographic and clinical factors with bacterial isolates in EOI patients at DMCSH, Northwest Ethiopia, 2021.

Variables
Isolates N (%)$ COR (95%CI) P-value AOR (95%CI) P-value
Sex Female 53(40.8) 1
Male 77(59.2) 1.22(0.697–2.131) 0.487 - -
Age
≤14 years 5(3.8) 1 1
15–24 years 26(20) 4.05 (1.15–14.29) 0.030* 9.18(1.01–82.80) 0.049**
25–64 years 42(32.3) 3.37(1.01–11.31) 0.048* 7.47(1.06–52.31) 0.043**
≥65 years 57(43.8) 1.99(1.04–3.80) 0.037* 1.88(0.80–4.41) 0.148
Residence
Urban 27(20.8) 1 1
Rural 103(79.2) 1.62(0.85–3.101) 0.141* 0.92 (0.25–3.38) 0.908
Educational status
Read and write 26(20.0) 1
Not read and write 104(80.0) 0.88(0.19–3.94) 0.872 - -
Occupation
Civil servant 6(4.6) 1 1
Farmer 72(55.4) 2.77(0.88–8.72) 0.082* 5.33(1.04–37.328) 0.045**
Merchant 5(3.8) 0.57(0.27–1.19) 0.136* 0.37(0.09–1.52) 0.169
Housewife 22(16.9) 0.25(0.027–2.40) 0.231* 0.19(0.01–3.83) 0.283
Daily labourer 2(1.5) 0.69(0.27–1.77) 0.449 0.47(0.09–2.54) 0.385
Others 23(17.7) 0.64(0.05–7.62) 0.723 1.08(0.06–19.18) 0.955
Use of traditional medicine Yes 5(3.8) 0.33(.038–2.87) 0.314 - -
No 125(96.2) 1
History of eye trauma
Yes 11(8.5) 1.25(0.48–3.27) 0.643 - -
No 119(91.5) 1
History of eye surgery Yes 21(16.2) 6.46 (2.18–19.16) 0.001* 5.39 (1.66–17.48) 0.005**
No 109(83.8) 1 1
Frequency of face washing
Less frequent 54(41.5) 3.37(1.67–6.79) 0.001* 5.32 (1.31–7.23) 0.010**
Once a day 69(53.1) 4.74(1.45–15.47) 0.020* 3.07 (1.13–25.13) 0.035**
More frequent 7(5.4) 1 1
Systemic disease Yes 5(3.8) 0.69(0.12–3.89) 0.889 - -
No 125(96.2) 1

Key

$ = Proportion is calculated using total bacterial isolate (130) as a denominator

*P-value <0.25

**P-value <0.05, COR-Crude Odds Ratio, AOR-Adjusted Odds Ratio, CI- Confidence Interval.

Patients in the age groups of 15–24 (AOR: 9.18, 95% CI: 1.01–82.80; P = 0.049) and 25–64 (AOR: 7.47, 95% CI: 1.06–52.31; P = 0.043) years had a statistically significant odds of harbouring culture-confirmed bacteria. On the other hand, patients who had a history of eye surgery were 5.39 times more likely to harbour culture-confirmed bacteria than their counterparts were (AOR: 5.39, 95% CL: 1.66–17.48; P = 0.005). Besides, the odds of harbouring culture-confirmed bacteria in patients who used to wash their face less frequently was 5.32 times (AOR: 5.33, 95% CI: 1.31–7.23; P = 0.010). In addition, patients washing their face once a day were 3.08 times more likely to be infected with culture-confirmed bacteria compared to patients who used to wash their face more frequently (AOR: 3.08, 95% CI: 1.13–25.13; P = 0.035) (Table 6).

Discussion

Out of the 207 study participants, 130 (62.8%, 95% CI: 56.0–69%) harboured culture-confirmed bacteria which is in line with previous studies conducted in different parts of Ethiopia (59.4%, 62.4%, 60%, 58.3%, 57.8%, and 60.8%) [1,8,16,24,32,33] and in India [17] where a 61% prevalence of bacteria-caused EOI was reported. However, this finding is lower than a study conducted in the Republic of Yemen (74.1%), Nigeria (74.9%), and Southwest Ethiopia (74.7%) [22,34,35], but it is higher than a study conducted in Bangalore (34.5%), Gondar (47.4%), Jimma (48.8%) and Addis Ababa (54.2%) [21,3638]. This difference could be due to variations in geographical location, study design, and socioeconomic status of the populations.

In the current study, Gram-positive cocci were the most common culture-confirmed isolates with a prevalence of 77.7% (95% CI: 71.9–86) which is in line with several other studies from Ethiopia; Gondar (74.2%) [1], Addis Ababa (72.2%) [39], St. Paul Hospital Millennium Medical College, Addis Ababa (74.6%) [40] and with studies conducted abroad; Nigeria (86.5%) [35], Italy (81.8%) [41] and India (79.69%) [17]. However, it is lower than a study conducted in Gondar 88% [16] and Borumeda Hospital 93.7% [8] but higher than reports from Jimma 52% [22], Hawassa 61.5% [3], Bahir Dar 66.3% [24], Shashemene 68.2% [33] and Egypt 58.9% [42]. Like these studies, Gram-positive cocci were the most common bacteria isolated from EOI patients [4345] owing to the availability of these pathogens as commensals on the skin. Consistent with previous studies in Ethiopia at Gondar [16], Bahir Dar [24], Shashemene [33], Addis Ababa [39], and a recent study from Italy [41] the predominant Gram-positive cocci were S. aureus and CoNS. The increased prevalence of Gram-positive cocci may be due to contamination of the eye from skin normal flora as a result of touching eyes with hands, cataract extraction, and through contact lens [1,9]. However, the respective prevalence of S. aureus (46.1%) and CoNS (20.5%) in this study is higher compared to other studies conducted in Addis Ababa (36.8%) [39], Bahir Dar (37% and 23.1%) [24], Shashemene (37.4%) [33] and Yemen’s Sana’a city (30.1% and 8.2%) [34]. But, this prevalence is lower than a study from Gondar (50.3% and 33.5%) [16] and Shashemene (28.8%, (in the case of CoNS) [33]. This difference could be due to differences in sample size where our sample size is comparatively smaller.

The prevalence of culture-confirmed Gram-negative bacteria in the current study was 21.5% which is in line with a study from Addis Ababa (18.8%) [40], but lower than studies from Bahir Dar (33.7%) [24], Gondar (44.5%) [36], Shashemene (31.8%) [33] and India (35%) [38]. However, it is higher than studies conducted in Borumeda, Gondar, and Jimma, which reported a respective prevalence of 6.5%, 12%, and 11.5% [8,16,22]. In our study, E. coli was the predominant Gram-negative bacteria similar to studies conducted in Shashemene, Ethiopia [33], Nigeria [35] and Italy [41]. On the contrary, other studies conducted in Jimma [22], Yemen [46], and Gondar [20] reported P. aeruginosa as the dominant Gram-negative bacterial isolate. Moreover, studies by Ayehubizu et al. [24] and Getahun et al. [16] reported K. pneumoniae as a predominant Gram-negative bacteria.

Unlike previous studies conducted in Ethiopia which reported the dominance of conjunctivitis [16,24,33,47], the commonest type of EOI in the current study was blepharitis with a prevalence of 46.2% followed by conjunctivitis (28.1%). Like the studies, S. aureus was the predominant isolate in blepharitis and conjunctivitis patients in the current study. However, the prevalence of S. aureus in blepharitis (58.3%) and conjunctivitis (35.9%) in the current study is higher compared with studies conducted in different parts of Ethiopia Menelik II referral hospital (37.8% and 22.6%) [37], Bahir Dar (15% and 26.6%) [24], Shashemene (47.2% and 30.8%) [33] and Tigray (38.5% and 21.5%) [47]. However, the prevalence of blepharitis and conjunctivitis in the current study is lower than a study from Gondar (50.6% and 51.1%) [16]. The high rate of S. aureus and CoNS among blepharitis cases may be associated with the presence of virulence factors such as exo-enzymes which have the potential of introduction by hands and aerosols [48].

Dacryocystitis causes irritation and discomfort to the patient which commonly affects the middle-aged and elderly women [49]. In this study, the prevalence of dacryocystitis was 3.6% predominantly caused by Gram-positive bacteria which is lower than other studies conducted in Ethiopia; Bahir Dar (45.5%) [24], Gondar (7.3%) [16], Shashemene (17.7%) [33] and Tigray (4.8%) [47]. Gram-positive bacteria predominantly cause dacryocystitis in this study similar to different studies in Ethiopia [16,24,33,47] and Iran [18]. On the contrary, a study from Israel [50] reported a predominance of Gram-negative bacteria in dacryocystitis patients. In this regard, an earlier study [49] also noted the increasing trend of Gram-negative bacteria especially in the case of chronic dacryocystitis. This scenario is different in different study settings. For example, a study [51] reported a high predominance of CoNS in chronic dacryocystitis while S. aureus and Pseudomonas species predominate in the case of acute dacryocystitis. The cause of these epidemiological differences could be due to differences in bacterial ecology owing to regional and climate differences as reported in keratitis and conjunctivitis patients [52,53].

Prescription of antibiotics without conducting antimicrobial susceptibility testing for severe ocular infections is routinely practiced resulting in an increased rate of antimicrobial resistance [54]. In this study, culture-confirmed bacterial isolates showed a resistance pattern of 63.3%, 60%, 56.6%, 45.5%, and 44.4% to azithromycin, penicillin, erythromycin, tetracycline, and doxycycline, respectively. This is lower compared to other studies done in Ethiopia; Hawassa (69.9%) [3] and Gondar (77.1%) [36]. Most of the isolated bacteria were sensitive to ciprofloxacin which is in agreement with a study conducted in Addis Ababa [40]. S. aureus showed high resistance to azithromycin, penicillin, erythromycin, and doxycycline, which is partly similar to studies done in Bahir Dar, Gondar, and Shashemene [16,24,33] where the authors showed a high resistance pattern of S. aureus, especially to penicillin. The current study reported a high resistance pattern of S. pneumoniae to ceftazidime and penicillin. The high prevalence of penicillin-resistant S. pneumoniae in this study is contrary to a study from Shashemene [33] where the authors reported 100% susceptibility of S. pneumoniae to penicillin. On the other hand, CoNS showed high resistance to penicillin like previous studies from Ethiopia [16,24,33].

We observed a 20% prevalence of MRSA based on cefoxitin resistance. This result is high compared to studies conducted at St. Paul Hospital Millennium Medical College (12.5%) [40], Bahir Dar (16.9%) [24] and the United Kingdom (8.3%) [55] but lower than studies conducted in Menelik II Referral Hospital (34.3%) [37] Gondar (24%) and Uganda (31.9%) [9]. In our study, S. aureus was the predominant cause of culture-confirmed dacryocystitis which showed a high sensitivity to ciprofloxacin similar to studies from Ethiopia [47] and Israel [51].

In this study, E. coli was observed to be resistant to amoxicillin-clavulanic acid, tetracycline, ampicillin, and ceftazidime. P. mirabilis also showed less sensitivity to amoxicillin-clavulanic acid, imipenem, and tetracycline. Other studies also reported a high resistance profile of E. coli and Proteus species to tetracycline and ampicillin [16,24,33]. Other Gram-negative bacteria including P. aeruginosa, K. pneumoniae, and Citrobacter exhibited 100% sensitivity to amikacin, imipenem and ciprofloxacin in this study, which is similar to previous studies conducted in Ethiopia [16,24,33] where the authors reported high susceptibility of P. aeruginosa, K. pneumoniae, and Citrobacter especially to ciprofloxacin.

We observed a high prevalence of MDR among Gram-positive bacteria (66.7%) where S. aureus (63.2%), CoNS (29.4%), and S. pneumoniae (2.9%) showed a high multidrug resistance profile. Among Gram-negative bacteria, 32.1% were MDR in the present study. Overall, 59.2% of the culture-confirmed bacterial isolates were MDR. This is lower than previous studies conducted in Ethiopia; Gondar (64.6%) and St. Paul’s Hospital Millennium Medical College (66.4%) [16,40], southern Ethiopia (69.9%) [54] and other studies from Gondar (87.1%) [1] and (77.3%) [36]. However, it is higher than studies from Tigray (53.9%) [11] and Bahir Dar (45.2%) [24].

Overall, the observed MDR pattern of culture-confirmed bacteria to different antibiotics could be linked to prescription of broad-spectrum antibiotics, lack of regular screening of antimicrobial resistance patterns before prescription, self-medication practice, and misuse of antibiotics [8,20,24]. The antimicrobial resistance pattern of bacteria causing ocular diseases differs from place to place and time to time due to different drug regulatory policies and bacterial ecology [56]. The differences in antimicrobial susceptibility patterns of bacterial isolates against different antimicrobials in different countries and/or settings might be due to the differences in bacterial strain, laboratory procedures, bacterial load, laboratory facility, drug control policies, and awareness of the community towards drug resistance.

In the present study, different socio-demographic and clinical variables were significant causes of bacterial EOI. The prevalence of culture-confirmed bacteria was significantly associated with age groups 15–24 years (P = 0.049) and 25–64 years (P = 0.043), being farmer (P = 0.045), previous history of eye surgery (P = 0.005) and washing face less frequently (P = 0.01) and washing face once a day (P = 0.035). This result is comparable with the data reported from Dessie [8]. In this study, although not a significant predictor (P = 0.148), most culture-confirmed bacteria were isolated from individuals in the age group ≥ 65 years old which might be due to age-associated deterioration of immunity supported by a study done in Menelik II referral hospital [37] and ALERT center, Ethiopia [39]. Children and elderly are known to be more susceptible to EOI [15] in support of our findings. A study conducted in ALERT center [39] reported that residence and educational status didn’t show any statistically significant association with bacterial prevalence in EOI patients (P>0.05) which is similar to this study.

This study has the following limitations: 1) conducted in a single center 2) lack of facilities to isolate Chlamydia, anaerobic bacteria, and slow-growing bacteria 3) we did not report the vancomycin resistance pattern of S. aureus while it was the predominant isolate in the study 4) we didn’t isolate fungi and molecular methods were not employed and 5) a short time frame and smaller sample size. Having these limitations, our study provides a glimpse into the incidence, antimicrobial susceptibility patterns and associated factors of culture-confirmed bacterial causes of EOI important for clinicians and policymakers to design appropriate interventions.

Conclusion

The prevalence of culture-confirmed bacteria isolated from EOI patients was significantly high in the study area. The major bacterial isolates were S. aureus, CoNS, S. pneumoniae, E. coli, and P. mirabilis. Ciprofloxacin was a comparatively more effective antibiotic for both Gram-positive and Gram-negative bacteria. However, high rate of bacterial antibiotic resistance was observed in this study. In addition, a considerable proportion of Gram-positive and Gram-negative bacterial isolates demonstrated MDR. Young and old age (below 65 years), being a farmer, previous history of eye surgery and less frequency of face washing significantly increased the incidence of culture-confirmed bacterial causes of EOI. Strict guidelines and drug regulation policies should be in place for the prevention and control of antimicrobial resistance. Additionally, bacterial isolation and antimicrobial susceptibility testing should be routinely performed, and public health measures are also pivotal to tackling EOI caused by bacteria.

Supporting information

S1 Data. File 1: Data set included in the analysis.

(SAV)

Acknowledgments

We would like to acknowledge Debre Markos University and DMCSH for their administrative support. Further, we duly acknowledge DMCSH eye clinic and microbiology laboratory staffs for assisting in data collection and allowing the laboratory space. We duly acknowledge Arnaud John Kombe Kombe (PhD) for editing the language of the manuscript.

Abbreviations

AST

Antimicrobial Susceptibility Testing

ATCC

American Type Culture Collection

CFU

Colony-Forming Unit

CLSI

Clinical and Laboratory Standards Institute

CONS

Coagulase-Negative Staphylococcus

DMCSH

Debre Markos Comprehensive Specialized Hospital

EUCAST

European Committee on Antimicrobial Susceptibility Testing

MDR

Multi-drug Resistance

EOI

External ocular infection

MRSA

Methicillin-resistant Staphylococcus aureus

Data Availability

All relevant data are within the paper and its Supporting Information files.

Funding Statement

The author(s) received no specific funding for this work.

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Decision Letter 0

Baochuan Lin

26 Jul 2022

PONE-D-22-13636Bacterial Isolates, Antimicrobial Susceptibility Pattern and Associated Factors of External Ocular Infections among Patients attending Eye Clinic at Debre Markos Comprehensive Specialized Hospital, Northwest EthiopiaPLOS ONE

Dear Dr. Mengist,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

I have received the reviews of your manuscript. While your paper addresses an interesting question, the reviewers stated several concerns about your study and did not recommend publication in its present form. One reviewer felt that the rationale of the study needs to be strengthen, as well as the criteria of sample selection and collection. The other reviewers felt that the manuscript could benefit from substantial editing for clarity.  Please see the reviewers’ insightful comments below

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Reviewer #1: Yes

Reviewer #2: Partly

Reviewer #3: Partly

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2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: No

Reviewer #3: Yes

**********

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Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The aim of this study was to identify the prevalence of bacteria isolated from ocular samples and their pattern of resistance to antibiotics. This article is very interesting for readers of this journal. The language of the paper is difficult to understand and includes many errors, and the results must be better reported. The main text and the methods have to need to improve.

1) Improve the title, it is too long; also the keywords.

2) The abstract is too long. Some details of statistical data would be reported in the main text and not in the abstract. The introduction and result sections in abstract could be improved, and reduce Method section.

3) Improve the Introduction, to be more specific and clear, reference https://doi.org/10.3390/microorganisms8071033. Report epidemiological data that focus on the mobility of this disease in the world.

4) Table 3,4: could only show R% and no I% or S%, it is better.

5) In the discussion section, reference this article and compare it with your results, https://doi.org/10.3390/antibiotics11040463

Reviewer #2: Thank you very much for the opportunity to review the above-referenced manuscript titled "Bacterial Isolates, Antimicrobial Susceptibility Pattern and Associated Factors of External Ocular Infections among Patients attending Eye Clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia" by Haile et al. Considering the increasing burden of ocular bacterial infections and the concurrent variation in its etiology studies investigating into such pertinent issues are warranted. There is an existing similar published peer-reviewed manuscript from this same area of North-Western Ethiopia. However, Haile and colleagues provide contextual evidence, which I found elusive considering the lack of necessary details to determine the soundness of the study.

Major comments

1. What was the authors' rationale for selecting the Debre Markos Comprehensive Specialized Hospital?

2. Are their patients' characteristics different from that of Gondar teaching hospital regarding socioeconomic and lifestyle factors since all facilities are located in the same region and with similar published literature from the latter?

3. How representative is the sample?

4. Authors, in their limitation, mentioned the "lack of facilities to isolate fastidious bacteria, anaerobic bacteria, and slow-growing bacteria," which contradicts some elements of the methodology, and I require authors to address the below query.

5. What necessitated the authors to use chocolate agar (traditionally and widely known for the growth of fastidious organisms) for the initial isolation process?

6. Authors grow some organisms in the presence of 5% CO2; what was the rationale if there were facilities limitations.

7. Where chlamydia trachomatis investigated?

8. How was the sample transported, and with what transport medium?

9. Who collected the samples, and what was his/her expertise?

10. Who administered the questionnaire, and at what stage was it done?

Minor comments

1. Authors should present their hypothesis in the background to give meaning to the objective.

2. Could the authors provide some details of the facilities and the services they provide

3. The introduction could benefit from adequate structuring. Consider presenting in an inverted pyramid form, thus more broad and narrow it downwards.

4. By 'written assent', do the researchers mean taking written consent from caregivers? A more direct explanation will be ideal.

5. Consider deleting the operational terminologies since it appears redundant.

Reviewer #3: There is no author/s identified from the Department of Ophthalmology though this was given on the title page.

The author may state as a limitation those tests not carried out on fungi, molecular detection and keratitis cases.

**********

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

**********

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Attachment

Submitted filename: PloS review.docx

PLoS One. 2022 Nov 3;17(11):e0277230. doi: 10.1371/journal.pone.0277230.r003

Author response to Decision Letter 0


7 Aug 2022

Rebuttal letter

Manuscript number: PONE-D-22-13636

Title: Bacterial Isolates, Antimicrobial Susceptibility Pattern and Associated Factors of External Ocular Infections among Patients attending Eye Clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia, to be published in PLOS ONE

Dear Reviewers,

We really appreciate your effort made to make our manuscript readable through providing us with valuable comments and corrections. We have corrected all concerns you raised throughout the manuscript. We provided two types of documets; clean manuscript and another manuscript with track changes so that you can easily notice the revisions we made. Below is a detailed point-by-point response to your queries.

Point-by-point response

Result section

I kindly recommend the authors rewrite this section, particularly the AST results. For example, there are texts read, as “Most Gram-positive and Gram-negative bacteria were sensitive to ciprofloxacin. However, 83.3% (85/102) of Gram-positive bacteria showed resistance to at least one drug.” Such kinds of generalizations are ambiguous for the reader and need to be specified and rewritten.

1. Response: We corrected the statement and avoided vaue results.

Introduction

Line 2: “Several factors including, but not limited to, dust, high temperature…” here the dust, temperature by them self may induce EOI? Need to clarify it.

2. Response: Corrected

Method section

In this section, please include the Study participants and Socio-demographic data and please check to include the eligibility criteria in "... clinically diagnosed with external Eye infections and fulfilled the eligibility criteria during..."

You may revise the sentence as follows: ‘’Demographic data (age, sex, monthly income, educational level, occupation, and address and) and ophthalmic clinical data (history of repeated infections, duration of stay in the hospital, use of contact lenses, surgery, previous antibacterial therapy, systemic diseases, and use of traditional medicine) were collected using structured questionnaires and physical examinations, respectively.’’

3. Response: Thank you. We revised it accordingly.

The authors should include specimen collection, Transportation and processing of parts

It did not show specimen handling for external ocular infections on the method part.

4. Response: The specimen was collected at DMCSH and processed at DMCSH microbiology laboratory. Thus, no need to use transport media as the sample was directly processed in the laboratory.

Antimicrobial susecepility testing

“The methicillin resistance pattern of S. aureus and coagulase-negative staphylococci (CoNS) was determined using the cefoxitin (30μg) antibiotic disk diffusion method. S. aureus and CoNS were reported methicillin-resistant…” in this sentence cefoxitin was used as a surrogate test for CoNS. Is it recommended by the CLSI guidelines? I am in doubt please check out it.

Cotrimoxazole and Trimethoprim / Sulfamethoxazole are two names for a single drug and it would be better two use one of the names in this or a single document.

5. Response: Yes using cefoxitin for determining methicillin resistance is recommended by CLSI and studies aalso recommend this. This is because Cefoxitin is considered as a better inducer of mec -A gene expression than oxacillin or methicillin (https://www.sciencedirect.com/science/article/pii/S0255085721017485).

Results:

This section did not cover some important aspects of the study. For example, Keratitis is not covered in this manuscript as well as fungal infections.

6. Response: Since its prevalence was very small, keratitis was reported together in “Other external ocular infections”. Fungal infections are not the objectives of the study and should not be reported.

Antimicrobial susceptibility patterns of bacterial isolates

The following drugs were not stated in the method section but simply appeared in the result section and were tested for some gram-positive isolates. Clindamycin. Doxycycline, trimethoprim, and sulfamethoxazole.

7. Response: Thank you. We included clindamycin and doxycycline in the methods. But trimethoprim-sulfamethoxazole was already included in its other name; cotrimoxazole.

The same kind of error has been introduced in gram-negative isolates. ciprofloxacin, meropenem, imipenem, ampicillin were not listed as drugs used for AST. However, there were in the result section. This indicated that your result is not based on your plan or May the result has been taken from other lab results. It should be based on what you had written in the method sections.

8. Response: We used all the drugs indicated in the results, however, we didn’t include in the methods section due to technical error; otherwise, we all understand scientific misbehaving. It is totally wrong to consider we took the results from other studies while we all are reputed researchers and senior medical microbiologists. Research s found on trust and we don’t encourage such kinds of statements. However, if a researcher is found with evidence using manulpulated data in his/her research, we encourage to claim retraction of papers.

Multidrug-resistance patterns of bacterial isolates

I recommend the author illustrate the class of antibiotics tested in table 5. In addition to that, the study did not mention the drug resistance genes. It needs to have a justification why not carried out those isolates, which are MDR.

9. Response: The classes of drugs are already discusses in tables 3 and 4. Readers are advised to have a first information from these tables. Including drug classes in Table 5 will be just a repetition of the previous results. So we just reported the summaries in Table 5.

Figures: The figure1 is unclear, together with the legend. Thus, it is suggested to improve them. The two variables (SEX and AGE) should be depicted separately against the clinical cases.

10. Response: Thank you. We did it accordingly and the figure is now clear.

DISCUSSIONS

In discussion parts... Is 62.9% in lined with 57.4%? You must have a 95% CI to justify the difference.

In this section, the author more focuses on the clinical importance of the isolates and AST pattern rather than reporting and comparing the magnitudes in a different location. Interpret and correlate the findings with their clinical relevance.

11. Response: Our discussion is written well as prevalence studies better be copared and justified with the results other similar studies. There is no 62.9% result in our manuscript rather 62.8% (95% CI: 56.0-69%) which is in line with 57.4% as clearly indiated in the first paragraph of the discussion section with 95% CI.

Reviewer #1: The aim of this study was to identify the prevalence of bacteria isolated from ocular samples and their pattern of resistance to antibiotics. This article is very interesting for readers of this journal. The language of the paper is difficult to understand and includes many errors, and the results must be better reported. The main text and the methods have to need to improve.

1. Response: We tried to avoid grammatical errors and typos across the manuscript.

1) Improve the title, it is too long; also the keywords.

2. Response: Titles should explain atleast what and when. Besides, all specific objectives are advised to be indicated in the title. In this regard, we couldn’t do modifications here.

2) The abstract is too long. Some details of statistical data would be reported in the main text and not in the abstract. The introduction and result sections in abstract could be improved, and reduce Method section.

3. Response: Thank you. We removed some sentences from the abstract.

3) Improve the Introduction, to be more specific and clear, reference https://doi.org/10.3390/microorganisms8071033. Report epidemiological data that focus on the mobility of this disease in the world.

4. Response: We cited this reference to include more epidemiological data.

4) Table 3,4: could only show R% and no I% or S%, it is better.

5. Response: Some drugs should be reported with R, I and S. To do so, we prepared the tables like that. If it was only binary data like yes/no, it is advisable to use only one i.e. either yes or no as the other can be known by deducting it from the total proportion.

5) In the discussion section, reference this article and compare it with your results, https://doi.org/10.3390/antibiotics11040463

6. Response: Thank you for sharing this recent study. We duly included it in the discussion happily.

Reviewer #2: Thank you very much for the opportunity to review the above-referenced manuscript titled "Bacterial Isolates, Antimicrobial Susceptibility Pattern and Associated Factors of External Ocular Infections among Patients attending Eye Clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia" by Haile et al. Considering the increasing burden of ocular bacterial infections and the concurrent variation in its etiology studies investigating into such pertinent issues are warranted. There is an existing similar published peer-reviewed manuscript from this same area of North-Western Ethiopia. However, Haile and colleagues provide contextual evidence, which I found elusive considering the lack of necessary details to determine the soundness of the study.

1. Response: Sure, there are similar studies in northwest Ethiopia. But, northwest Ethiopia is too vast including the three zones of Gojja, the four zones of Gondar and the Wolkait Humera zones. There are no similar studies in east gojjam zone so far, and e did the research to fill these gaps. Different research have different ne insights and we do have our own insights which has made the manuscript novel in this regard. Prevalence studies indicate a one time data which require repeated investigation. Therefore, it is not dscouragable to work on similar themes in different place, time and population.

Major comments

1. What was the authors' rationale for selecting the Debre Markos Comprehensive Specialized Hospital?

2. Response: DMCSH was selected because it is the only rwfderral hospital with independent eye clinic.

2. Are their patients' characteristics different from that of Gondar teaching hospital regarding socioeconomic and lifestyle factors since all facilities are located in the same region and with similar published literature from the latter?

3. Response: There may not be significant lifestyle factors differences among residents of nowrthwestern Ethiopia. However, socioeconomic data is different even among similar town residents. Such kinds of studies are recommended to be conducted at each district even below zonal level because cross-sectional studies are one time events that should be repeated in place and time.

3. How representative is the sample?

4. Response: We utilized consecutive sampling technique which is considered as the best among non-probability sampling techniques. We used scientific methods for calculating the sample size and thus we beleiv it is representative enough. In principle, 10% of a population is considered as representative where ours is above 20%.

4. Authors, in their limitation, mentioned the "lack of facilities to isolate fastidious bacteria, anaerobic bacteria, and slow-growing bacteria," which contradicts some elements of the methodology, and I require authors to address the below query.

5. Response: Thank you. We didn’t isolate some fastidious bacteria (Chlamydia), anaerobic bacteria and slow growing bacteria. The sentence is just to mean Chlamydia and we made corrections here.

5. What necessitated the authors to use chocolate agar (traditionally and widely known for the growth of fastidious organisms) for the initial isolation process?

6. Response: We used blood agar and chocolate agrar as general enriched media to grow all types of bacteria. Then, Macconkey agar and MSA were used to selectively grow Gram-negative bacteria and Staphylococci, respectively.

6. Authors grow some organisms in the presence of 5% CO2; what was the rationale if there were facilities limitations.

7. Response: The presence of 5% CO2 is important for the growth of microaerophilic bacteria, not anerobic bacteria. We used candle jar for providing 5% CO2 for microaerophilic bacteria including Streptococci. Ths facilities for anaerobic bacteria and microaerophilic bacteria are quite different.

7. Where chlamydia trachomatis investigated?

8. Response: We didn’t report C. trachomatis in this study.

8. How was the sample transported, and with what transport medium?

9. Response: Since we did the lab procedures inside DMCSH, no transport media was used. We directly inoculated the samples in agars.

9. Who collected the samples, and what was his/her expertise?

10. Response: As clearly indicated in the data collection part now, data and specimen were collected by optometrist nurses

10. Who administered the questionnaire, and at what stage was it done?

11. Response: Optometrist nurses administered the questionnaire and done after specimen collection.

Minor comments

1. Authors should present their hypothesis in the background to give meaning to the objective.

2. Could the authors provide some details of the facilities and the services they provide

3. The introduction could benefit from adequate structuring. Consider presenting in an inverted pyramid form, thus more broad and narrow it downwards.

4. By 'written assent', do the researchers mean taking written consent from caregivers? A more direct explanation will be ideal.

5. Consider deleting the operational terminologies since it appears redundant.

12. Response: We provided a hypothesis in the background. Regarding the facilities, we included what eye care related facilities are given by DMCSH. We included only eye care related facilities and services as our objective is related to eye infections. The introduction is from general to specific and we believe it is not necessary to restructure. We corrected the ethical issues in the manuscript and made it clear. Operational terminologies are very important in case of our manuscript. It helps readers understand the scenario. The opertational terms here are not general, rather they are terms we operationally used in this study.

Reviewer #3: There is no author/s identified from the Department of Ophthalmology though this was given on the title page.

The author may state as a limitation those tests not carried out on fungi, molecular detection and keratitis cases.

1. Response: we included limitations on failure of identifying fungi and lack of using molecular methods. But keratitis is included in the “other ocular infections” part as it is a very small proportion to be independently reported. Ophtalmologists identified patients during the study. For this, we acknowledged them.

Attachment

Submitted filename: 4. Rebutal letter-R5.docx

Decision Letter 1

Baochuan Lin

19 Sep 2022

PONE-D-22-13636R1Bacterial isolates, their antimicrobial susceptibility pattern, and associated factors of external ocular infections among patients attending eye clinic at Debre Markos Comprehensive Specialized Hospital, Northwest EthiopiaPLOS ONE

Dear Dr. Mengist,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

All reviewers agreed that the revised version showed improvement, however, there are a few points that still need to be addressed. Please discuss the limitation of the study and justification of study done in a single center.  Also, one of the reviewers has concern that the previous comments were not well addressed (see reviewer's insightful comments below).

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Academic Editor

PLOS ONE

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Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #2: (No Response)

Reviewer #3: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: No

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: No

Reviewer #3: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

Reviewer #2: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The authors have addressed review comments raised in a previous round of review and the manuscript was improved and is now it is acceptable for publication.

Reviewer #2: (No Response)

Reviewer #3: Some comments are not well addressed. For instance, cotrimoxazole is not the same drug as either trimethoprim, or sulfamethoxazole. It is the combination of two drugs.

Please state the limitations of this study.

**********

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

**********

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PLoS One. 2022 Nov 3;17(11):e0277230. doi: 10.1371/journal.pone.0277230.r005

Author response to Decision Letter 1


20 Sep 2022

Rebuttal letter

Manuscript number: PONE-D-22-13636R1

Title: Bacterial Isolates, their Antimicrobial Susceptibility Pattern and Associated Factors of External Ocular Infections among Patients attending Eye Clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia

Dear Editor and reviewers,

Thank you so much for your time and comments. We have corrected all concerns you raised throughout the manuscript. We provided two types of documents; clean manuscript and another manuscript with track changes so that you can easily notice the revisions we made. Below is a detailed point-by-point response to your queries.

Point-by-point response

1. Discuss the justification of study done in a single center

Response: We included the justification in the methods section as follows

The study was conducted among EOI suspected patients at DMCSH, which is found in Debre Markos town, the capital of East Gojjam zone in Amhara National Regional State, Northwest Ethiopia. DMCSH is the only tertiary hospital providing health care services for over four million inhabitants of East Gojjam and West Gojjam zones and the surrounding areas. In addition, it is the only hospital with an independent tertiary eye clinic that provides both outpatient and inpatient services. All cases requiring tertiary care service in the area are referred to DMCSH. Besides, it has also a high patient flow as the eye clinic provides medical service for an average of 21,000 patients per year of which about 4,151 of them are clinically diagnosed as EOI. Moreover, it is the only hospital in the area providing bacterial culture and antimicrobial susceptibility testing services. Due to these reasons, DMCSH was selected as the only study site.

2. Cotrimoxazole is not the same drug as either trimethoprim, or sulfamethoxazole. It is the combination of two drugs.

Response: Yes, we understand. We used a combination of trimethoprim/sulfamethoxazole in this study, and we previously called it as “cotrimoxazole”. For convenience we removed the name “cotrimoxazole” and replaced it with its standard naming Trimethoprim/sulfamethoxazole (SXT). We used this combination with a total dose of 25μg and with a respective trimethoprim/sulfamethoxazole dose of (1.25/23.75μg). This is the standard use based on CLSI guideline.

3. Please state the limitations of this study.

Response: We stated the limitations of the study in the last paragraph of the Discussion section as follows;

This study has the following limitations: 1) conducted in a single center 2) lack of facilities to isolate Chlamydia, anaerobic bacteria, and slow-growing bacteria 3) we did not report the vancomycin resistance pattern of S. aureus while it was the predominant isolate in the study 4) we didn’t isolate fungi and molecular methods were not employed and 5) a short time frame and smaller sample size. Having these limitations, our study provides a glimpse into the incidence, antimicrobial susceptibility patterns and associated factors of culture-confirmed bacterial causes of EOI important for clinicians and policymakers to design appropriate interventions.

Attachment

Submitted filename: Rebutal letter-R6.docx

Decision Letter 2

Ivone Vaz-Moreira

24 Oct 2022

Bacterial isolates, their antimicrobial susceptibility pattern, and associated factors of external ocular infections among patients attending eye clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia

PONE-D-22-13636R2

Dear Dr. Mengist,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Ivone Vaz-Moreira, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation.

Reviewer #1: All comments have been addressed

Reviewer #3: All comments have been addressed

**********

2. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #3: Yes

**********

3. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #3: Yes

**********

4. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #3: Yes

**********

5. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: Yes

Reviewer #3: Yes

**********

6. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: (No Response)

Reviewer #3: The authors addressed all the comments. Therefore, no more comments provided. I recommend the authors to proceed the next step.

**********

7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #3: No

**********

Acceptance letter

Ivone Vaz-Moreira

26 Oct 2022

PONE-D-22-13636R2

Bacterial isolates, their antimicrobial susceptibility pattern, and associated factors of external ocular infections among patients attending eye clinic at Debre Markos Comprehensive Specialized Hospital, Northwest Ethiopia

Dear Dr. Mengist:

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

If we can help with anything else, please email us at plosone@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Ivone Vaz-Moreira

Academic Editor

PLOS ONE

Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Data. File 1: Data set included in the analysis.

    (SAV)

    Attachment

    Submitted filename: 5. Rebutal letter-R4.docx

    Attachment

    Submitted filename: PloS review.docx

    Attachment

    Submitted filename: 4. Rebutal letter-R5.docx

    Attachment

    Submitted filename: Rebutal letter-R6.docx

    Data Availability Statement

    All relevant data are within the paper and its Supporting Information files.


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