Antibodies |
|
Monoclonal ANTI-FLAG M2 antibody |
Sigma-Aldrich |
Cat# F3165; RRID:AB_259529
|
ANTI-FLAG M2 Affinity Gel |
Sigma-Aldrich |
Cat# A2220; RRID:AB_10063035
|
Myc-Tag Mouse mAb |
Cell Signaling Technology |
Cat# 2276; RRID:AB_331783
|
Anti-Histone H3 antibody |
Huabio |
Cat# M1306-4 |
Beta Actin Monoclonal antibody |
Proteintech |
Cat# 66009-1-Ig; RRID:AB_2687938
|
Anti-Benzoyllysine Rabbit mAb |
PTM Biolabs |
Cat# PTM-761 |
Anti- Benzoyllysine antibody conjugated agarose beads |
PTM Biolabs |
Cat# PTM-763 |
Anti-Acetyllysine Mouse mAb |
PTM Biolabs |
Cat# PTM-101 |
|
Chemicals, peptides, and recombinant proteins |
|
H3-20 peptide: Ac-ARTKQTARKSTGGKAPRKQL |
This paper |
N/A |
H4-20 peptide: Ac-SGRGKGGKGLGKGGAKRHRK |
This paper |
N/A |
Benzoyl coenzyme A lithium salt |
Sigma-Aldrich |
Cat# B1638 |
Acetyl coenzyme A lithium salt |
Sigma-Aldrich |
Cat# A2181 |
Critical commercial assays |
lipofectamine 2000 |
Invitrogen |
Cat# 11668019 |
|
Deposited data |
|
Proteomics dataset of the Kbz sites in the quantitative benzoylome |
PRIDE |
PXD034187 |
|
Experimental models: Cell lines |
|
293T |
NCACC |
Cat# GNHu17 |
HepG2 |
NCACC |
Cat# TCHu72 |
Hela |
NCACC |
Cat# TCHu187 |
|
Recombinant DNA |
|
Plasmid: pCMV-Flag-HAT1 |
This paper |
N/A |
Plasmid: pCMV-Flag-CBP |
This paper |
N/A |
Plasmid: pCMV-Myc-p300 |
This paper |
N/A |
Plasmid: pCMV-Flag-GCN5 |
This paper |
N/A |
Plasmid: pCMV-Flag-MOF |
This paper |
N/A |
Plasmid: pCMV-Flag-PACF |
This paper |
N/A |
Plasmid: pCMV-Flag-Tip60 |
This paper |
N/A |
Plasmid: pCMV-Flag-HBO1 |
This paper |
N/A |
Plasmid: pCMV-Flag-HBO1 G485A/E508Q |
This paper |
N/A |
Plasmid: pCMV-Flag-JADE1 |
This paper |
N/A |
|
Software and algorithms |
|
MaxQuant software (v1.6.15.0) |
MaxQuant |
https://www.maxquant.org/ |
PyMol package |
Pymol |
http://www.pymol.org/ |
R clusterProfiler package |
R-project |
https://www.r-project.org/ |
iceLogo (v1.2) |
IceLogo |
https://iomics.ugent.be/icelogoserver/ |
ImageJ |
National Institutes of Health |
https://imagej.nih.gov/ij/ |