Table 1.
List of the HBV strains included in the study (n = 1053).
| Group and Region | No. of Strains | Year(s) of Collection | GenBank Accession Numbers | Citation |
|---|---|---|---|---|
| Siberian Natives, n = 381 | ||||
| Altaians: Altai Republic, Ust-Kansky District (southwestern Siberia) | 21 | 1997 | JX090656-JX090674, JX125378, JX125379 | [25] |
| Altaian Kazakhs: Altai Republic, Kosh-Agachsky District (southwestern Siberia) | 7 | 1999 | JX090719-JX090724, JX125377 | [25] |
| Tuvans: Tyva (or Tuva) Republic (southern Siberia) | 18 | 2004–2008 | Author’s numbers (tuvXX, see Figure S1 in Supplementary Materials) |
[35] |
| Teleutes: Kemerovo Region, Belovsky District (southwestern Siberia) | 5 | 2003 | JX090633-JX090637 | [25] |
| YNAR: combined group of Khants, Nenets, Komi, Kets in the Yamal-Nenets Autonomous Region (YNAR; northwestern Siberia) | 35 | 1992–2006 | JX090647, JX090675-JX090679, JX090688-JX090702, JX090711-JX090718, JX125366-JX125368, JX125382-JX125384 | [36] |
| Taimyr: combined group of Dolgans and Nganasans in the Dudinsky District (northernmost Siberia, Taimyr Peninsula) | 32 | 2000 | JX090626-JX090632, JX090638-JX090646, JX090703-JX090710, JX125370-JX125375, JX125381, JX125386 | [25] |
| Buryats: Irkutsk Region, Nukutsky and Alarsky Districts (southeastern Siberia) | 35 | 2005, 2006 | JX090605-JX090625, JX090680- JX090687, JX125364, JX125365, JX125369, JX125376, JX125380, JX125385 | [36] |
| Yakuts: Sakha Republic (or Yakutia) (eastern Siberia) | 17 | 2004–2006 | Author’s numbers (yakXX, see Figure S1 in Supplementary Materials) |
[35] |
| 15 | 1997 | AY653781, AY653782, AY653787-AY653789, AY653796, AY653799, AY653828, EU594390-EU594395, EU594433 | [37,38] | |
| 35 | 2014 | KM212957, KP143742-KP143745, KP165597-KP165605, KP184495-KP184499, KP202936-KP202945, KP230541, KT962021-KT962025 | [39] | |
| 38 | 2008–2019 | OK143470, OK143474, OK143477, OK143478, OK143480, OK143482, OK143485, OK143489 OK143490, OK143494-OK143496, OK143498, OM025238-OM025253, author’s numbers (88–732, see Figure S1) | [40] | |
| Chukchi: Chukotka Autonomous Region (northeastern-most Siberia) | 123 | 1997–2008 | Author’s numbers (chXX, schXX, see Figure S1 in Supplementary Materials) |
[35] |
| Urban populations of Russia and western republics of the former USSR (listed from west to east), n = 179 | ||||
| Estonia | 21 | 2003 |
EU594383-EU594386, EU594400-EU594414, EU594434, EU594435 |
[37,38] |
| Latvia | 33 | 2003–2005 |
AY603447-AY603466, AY653829, AY653858, AY653885, AY653886, EU594387, EU594388, JX096952-JX096958 |
[37,41]; Silamikelis & Legzdina, 2012 |
| Belarus | 31 | 2005 | EU414067, EU414075, EU414077, EU414078, EU414080-EU414085, EU414087, EU414090, EU414091, EU414093, EU414095-EU414097, EU414107-EU414110, EU414114-EU414122, EU414124-EU414129, EU414132-EU414143 | [42] |
| Russia (region not specified) | 2 | 2004 | AB205127, AB205128 | Nakajima et al., 2005 |
| Saint Petersburg | 2 | 2003, 2014 | AY509974, KT963508 | Morozov, 2004; Kalinina et al., 2016 |
| Moscow | 5 | 2003, 2004 | AB126580, AB126581, AY653786, AY653801, AY653847 | Abe & Tran, 2003; [38] |
| Volgograd city (southern European Russia) | 15 | 2003, 2004 | AY653776, AY653780, AY653791, AY653798, AY653800, AY653805, AY653808, AY653809, AY653825, AY653826, AY653830, AY653839, AY653843, EU594382, EU594389 | [37,38] |
| Tyumen city (eastern Ural) | 2 | 2004 | AY653871, AY653894 | [38] |
| Kemerovo city (western Siberia) | 8 | 2003, 2004 |
AY653821, AY653859, AY653862, AY653866, AY653873, EU594415-EU594417 |
[37,38] |
| Krasnoyarsk (southern Siberia) | 11 | 2003, 2004 | AY653810, AY653823, AY653824, AY653831, AY653870, AY653892, EU594429, EU594430-EU594432, EU594436 | [37,38] |
| Irkutsk Region (southeastern Siberia) | 8 | 2005 | JX090648-JX090655 | [36] |
| Chita city (eastern Siberia) | 7 | 2004 |
AY653806, AY653811, AY653834, AY653849, AY653856, EU594398, EU594399 |
[38] |
| Khabarovsk city (far eastern Russia) | 34 | 2003, 2004, 2015 | AY653822, AY653833, AY653850, AY653855, AY653876 AY653878, EU594418-EU594427, KX925286-KX925303 | [37,38]; Kotova et al., 2016 |
| Central Asian Republics of the Former USSR and Mongolia, n = 50 | ||||
| Uzbekistan | 19 | 2003, 2007 | AB222707-AB222715, AY653777, AY653814-AY653817, AY653819, AY653827, AY653832, AY653838, EU594397 | [37,43] |
| Kazakhstan | 2 | 2003 | EU594396, EU594428 | [38] |
| Tajikistan | 1 | 2003 | AY738889 | [17] |
| Mongolia | 28 | 2005–2006 |
AB263404-AB263412, AB270534-AB270550, DQ111986, DQ111987 |
[44,45] |
| Other Strains | ||||
| Prototype HBV strains with known (sub)genotypes from other parts of the world | 319 | 1984–2015 | See Figure S1 in Supplementary Materials for the accession numbers, locations, and years of collection |
- |
| HBV strains from ancient tombs located in different parts of the world (including modern Russian and Central Asian territories) | 124 | up to 10,000 years ago | Author’s names; see the Figure S1 in Supplementary Materials for the names, locations and years of burials |
[31] |