Potential of Endophytic Diaporthe sp. as a New Source of Bioactive Compounds

Abstract

Endophytic fungi are symbiotically related to plants and spend most of their life cycle within them. In nature, they have a crucial role in plant micro-ecosystem. They are harnessed for their bioactive compounds to counter human health problems and diseases. Endophytic Diaporthe sp. is a widely distributed fungal genus that has garnered much interest within the scientific community. A substantial number of secondary metabolites have been detected from Diaporthe sp. inhabited in various plants. As such, this minireview highlights the potential of Diaporthe sp. as a rich source of bioactive compounds by emphasizing on their diverse chemical entities and potent biological properties. The bioactive compounds produced are of significant importance to act as new lead compounds for drug discovery and development.

Introduction

Endophytic fungi are microorganisms that inhabit the living tissues of plants without posing any harmful or deleterious symptoms to them. Often, plants accommodate one or many endophytic fungi [1]. The interaction between endophytic fungi and their hosts is mutual, as the hosts supply habitation and nutrients while the fungi secrete functional metabolites for plant growth and survival [2]. Metabolites produced by endophytic fungi have been shown to possess structural diversity and exhibited a broad range of biological activities [1, 3]. These metabolites, at some point, are similar to those produced by the host plants; indicating the potential of endophytic fungi as an alternative source of bioactive compounds [1]. Hence, it is not surprising that endophytic fungi have attracted considerable attention in producing novel bioactive compounds for exploitation in medicine, agriculture and modern industries [4].

Among the vast endophytic fungi, genus Diaporthe (anamorph of Phomopsis) is known for its strong biosynthetic capability to produce bioactive metabolites [3, 5]. Diaporthe sp. is a widely distributed fungal genus and colonizes a broad range of hosts. It consists of approximately 800 species, with more than 950 species attributed to Phomopsis sp. [6]. It is commonly isolated from above-ground plants, particularly from tropical and temperate woody plants [7]. Secondary metabolites isolated from Diaporthe sp. have displayed a broad spectrum of biological activities with diverse chemical entities [8, 9]. As such, this minireview summarizes the bioactive compounds produced from Diaporthe sp. (duration 2015-2020 February) that had colonized within different host plants, particularly highlighting on their unique chemical entities. The bioactive compounds discovered in Diaporthe sp. are reported within the interest of biological context, and thereby, their potential as therapeutic agents.

Bioactive compounds from Diaporthe sp.

Plant-derived fungi of Diaporthe have been reported to produce numerous types of compounds that exhibit a range of biological activities. These compounds offer abundant bioactive core skeletons for new medicinal lead compounds, thus contributing to the research of drug discovery and development. The unique classes of compounds are discussed in the following section. Table 1 lists the isolated compounds from Diaporthe sp.

Table 1.

Source of diverse bioactive compounds isolated from endophytic Diaporthe sp. and their potential biological activities.

Diaporthe sp.	Host plant	Compounds	Chemical nature	Activity	Cell/Target	Ref.
Diaporthe sp. SNB-GSS10	Sabicea cinerea	Mycoepoxydiene (1); Altiloxin A (2); Enamidin (3); Eremofortin F (4)	Mycoepoxidiene; Terpenoids; Enamidines; Sesquiterpenoids	Cytotoxic	KB (human uterine cervical carcinoma cell); MRC-5 (human lung fibroblast cell); MDA-MB-435 (human breast cancer cell)	[7]
Diaporthe sp. LG23	Mahonia fortunei	19-nor-Lanosta-5(10),6,8,24-tetraene-1α,3β,12β,22S-tetraol (5); 3β,5α,9α-Trihydroxy-(22E,24R)-ergosta-7,22-dien-6-one (6); 3β,5α,9α,14α-Tetrahydroxy-(22E,24R)-ergosta-7,22-dien-6-one (7); (22E,24R)-Ergosta-7,9(11),22-triene-3β,5α,6α-triol (8); Chaxine C (9); Demethylincisterol A3 (10); Volemolide (11)	Triterpenoids	Antibacterial	Staphylococcus aureus (Gram-positive); Escherichia coli (Gram-negative); Bacillus subtilis (Gram-positive); Pseudomonas aeruginosa (Gram-negative); Streptococcus pyogenes (Gram-positive)	[23]
Diaporthe sp. 1308-05	Aucuba japonica var. borealis	Homopetasinic acid (12)	Acid derivatives	Cytotoxic	Cochliobolus miyabeanus (fungus); COLO 201 (human colon adenocarcinomacell); HL60 (human promyelocytic leukemia cell)	[25]
Diaporthe citri G-01	Mikania glomerata Spreng	3-Nitropropionic acid (13)	Acid derivatives	Sub-lethal	Larvae of Diatraea saccharalis (sugarcane borer)	[2]
Diaporthe maritima DAOMC628553	Picea rubens	Phomopsolides A-C (14-16); (S,E )-6-(4-hydroxy-3-oxopent-1-en-1-yl)-2H-pyran-2-one (17)	Pyranones	Antibiotic	Bacillus subtilis (Gram-positive)	[6]
Phomopsis sp. PSU-H188	Hevea brasiliensis	Phomopsisporones A-B (18-19); (E)-1893A (20); 1893B (21); Mycoepoxydiene (1); 2,3-Dihydromycoepoxydiene (22); Deacetylmycoepoxydiene (23); Nectriapyrone (24); Cytochalasin N (25); Diaporthalasin (26); (3R)-5-Methylmellein (27); (3R,4R)-cis-4-Hydroxy-5-methylmellein (28); (R)-(−)-5-Hydroxymethylmellein (29); Dothiorelones A-C and E (30-33); Cytosporones B and D (34-35)	Cytosporones; Mycoepoxydienes; Pyranones; Cytochalasins; Melleins; Pyridine derivatives	Antibacterial; Cytotoxic	Staphylococcus aureus (Gram-positive); MRSA (Gram-positive); KB (human oral cavity cancer cell); MCF-7 (human breast cancer cell); Vero (kidney fibroblast cells)	[12]
Diaporthe phaseolorum SKS019	Acanthus ilicifolius	Diaporphasines A-D (36-39); Meyeroguillines A, C and D (40-42); 5-Deoxybostrycoidin (43); Fusaristatin A (44)	Alkaloids	Cytotoxic	MDA-MB-435 (human breast cancer cell); HepG2 (human liver cancer cell); HCT116 (human colon cancer cell); NCI-H460 (human non-small cell lung cancer cell); MCF10A (human normal breast cell)	[21]
Diaporthe arengae TATW2	Terminalia arjuna (Roxb.)	Methyl 3-(3,5-di-tert-butyl-4-hydroxyphenyl)propionate (45); Pterin-6-carboxylic acid (46); 2,6-Ditert-butyl-4-phenol (47)	Phenolics	Anti-hypercholesterolemic	hRBC (red blood cell)	[1]
Diaporthe toxica	Lupinus sp.	Phomopsin F (48)	Hexapeptides	Cytotoxic	HepG2 (human liver cancer cell)	[26]
Diaporthe sp. SYSU-HQ3	Excoecaria agallocha	Diaporisoindoles A-E (49-53); Tenellones C and D (54-55); Diaporindenes A-D (56-59); Isoprenylisobenzofuran A (60)	Alkaloids; Benzophenones; Alkaloids	Anti-tuberculosis; LPS-activated NO production	MptpB (Mycobacterium tuberculosis protein tyrosine phosphatase B); RAW 264.7 (murine macrophage cell)	[27] [28]
Diaporthe sp. SCSIO 41011	Rhizophora stylosa	Isochromophilones A-F (61-66); 5-Chloroisorotiorin (67); epi-Isochromophilone (68); Isochromophilone III (69); epi-Isochromophilone III (70); 6-((1E,3E)-3,5-Dimethylhepta-1,3-dien-1-yl)-2,4-dihydroxy-3-methylbenzaldehyde (71); (2E,4E)-1-(2,6-Dihydroxy-3,5-dimethylphenyl)hexa-2,4-dien-1-one (72)	Azaphilone derivatives	Cytotoxic	ACHN; OS-RC-2; 786-O cells (human renal cancer cells)	[20]
Diaporthe sp. ECN-137	Phellodendron amurense	Diaporthols A and B (73-74)	Polyketides	Anti-migration	TGF-β1-elicited MDA-MB-231 (human breast cancer cell)	[16]
Diaporthe sp. ARL-09	Anoectochilus roxburghii	Cytoskyrin C (75); Epicytoskyrin (76)	Bisanthraquinones	Cytotoxic	SMMC-7721 (human hepatoma cell)	[29]
Diaporthe pseudomangiferaea	Tylophora ouata	Acetoxydothiorelones A and B (77-78); Dothiorelones K-N (79-82); 16-Acetoxydothiorelone C (83); Dothiorelones A-C (30-32); Dothiorelones G and I (84-85); Cytosporone D (35); Pestalotiopsone B (86); Mucorisocoumarin A (87); 5-Hydroxy-7-methoxy-4,6-dimethyl-2-phenylisoindoline-1,3-dione (88); Diaporphthalide A (89); Diaporlactone A (90)	Thiorelone	Anti-fibrosis; Cytotoxicity; Anti-diabetic	MRC-5 (human lung fibroblasts cell); BGC-823 (human gastric carcinoma cell); PTP1B (protein tyrosine phosphatase 1B)	[30]
Diaporthe sp.	Datura inoxia Mill	Xylarolide (91); Xylarolides A and B (92-93); Diportharine A (94)	Nonenolides; Coumarins	Antioxidant; Cytotoxic	DPPH; MIAPaCa-2 (human pancreatic cancer cell); PC-3 (human prostate cancer cell)	[24]
Diaporthe lithocarpus A740	Morinda officinalis	Tenllone I (95); Lithocarins B-D (96-98); Tenellone H (99); Phomopene (100)	Benzophenones; Eremophilanes; Monoterpentoids	Cytotoxic	SF-268 (human glioblastoma cell); MCF-7 (human breast cancer cell); HepG2 (human liver cancer cell); A549 (human lung adenocarcinoma cell)	[8]
Diaporthe sp. GZU-1021	Chiromanteshaematochir	Diaporthichalasins A-C (101-103); Phomopsichalasin G (104); 21-O-Deacetyl-L-696,474 (105); Cytochalasin H (106); Biatriosporin N (107); Phomopsichin B (108); Penialidin A (109); Phomoxanthone A (110)	Cytochalasins; Tetrahydroxanthone dimers	LPS-activated NO production; Anti-inflammatory cytotoxic	RAW 264.7 (murine macrophage cell)	[15]
Diapothe vochysiae LGMF1583	Vochysia divergens	Vochysiamides A and B (111-112); 2,5-Dihydroxybenzyl alcohol (113)	Carboxiamides; Alcohols	Antibacterial; Cytotoxic	MSSA (Gram-positive); MRSA (Gram-positive); Klebsiella. pneumonia (Gram-negative); A549 (human lung adenocarcinoma cell); PC-3 (human prostate cancer cell)	[5]
Phomopsis sp. CFS42	Cephalotaxus fortunei Hook	Phomotide A (114); 4-Acetyl-3,4-dihydro-6,8-dihydroxy- 3-methoxy-5-methylisocoumarin (115)	Polyketides	-	-	[9]
Diaporthe eucalyptorum KY-9	Melia azedarach Linn	Eucalyptacid A (116); Eucalactam B (117); Eugenitol (118); Cytosporone C (119); 4-Hydroxyphenethyl alcohol (120); 1-(4-Hydroxyphenyl)ethane-1,2-diol (121); N-(2-Hydroxy-2-phenylethyl)acetamide (122); Phomopene (100)		Antifungal	Alternaria. solani (fungus)	[31]

Mycoepoxydienes

Fungal mycoepoxydienes were among the bioactive compounds isolated from Diaporthe sp.. They are formed via polyketide pathway through the condensation of acetyl-coenzyme A (CoA) and malonyl-CoA [10]. Mycoepoxydienes have a rare oxygen-bridged cyclooctadiene that serves as the core with α,β-unsaturated lactone moiety [11]. In 2015, Mandavid et al. reported the isolation of mycoepoxydiene (1) from the ethyl acetate extract of Diaporthe sp. SNB-GSS10. The compound exhibited potent cytotoxicity against human uterine cervical carcinoma KB, human breast cancer MDA-MB-435 and human lung fibroblast MRC-5 cells with IC₅₀ 7.5, 17.7 and 15.8 μM, respectively [7]. In a study on Phomopsis sp. PSU-H188, five mycoepoxydiene derivatives; (E)-1893A (20), 1893 B (21), mycoepoxydiene (1), 2,3-dihydromycoepoxydiene (22) and deacetylmycoepoxydiene (23) were obtained. Among them, (E)-1893A was isolated for the first time in fungal endophytes. Similar to other reports, mycoepoxydiene was found active against human breast cancer MCF-7 (IC₅₀ 9.27 μM) and human oral cavity cancer KB (IC₅₀ 14.43 μM) cells while the rest were less active [7, 12]. Based on the cytotoxic mechanisms of mycoepoxydiene derivatives, they are able to induce cancer cells apoptosis in vivo, thus reflecting their potential for the development of anti-cancer drugs [13].

Cytochalasins

Cytochalasin, which has often been regarded as mycotoxin, is characterized by a substituted perhydro-isoindolone moiety joined to a macrocycle [14]. In 2017, two cytochalasin derivatives, known as cytochalasin N (25) and diaporthalasin (26), were isolated from Phomopsis sp. PSU-H188. Both compounds did not show any cytotoxicity on cancerous KB and MCF-7 cells, but cytochalasin N exerted a significant cytotoxic effect on non-cancerous Vero cells at 4.89 μM. Meanwhile, diaporthalasin was found to inhibit Gram-positive MRSA an Staphylococcus aureus (MIC 4 μg/ml), which had no cytotoxicity on non-cancerous cells [12]. In a study that assessed Diaporthe sp. GZU-1021, six cytochalasin derivatives were obtained. Among them, diaporthichalasins A-C (101-103) were identified as new compounds, whereas phomopsichalasin G (104), 21-O-deacetyl-L-696,474 (105) and cytochalasin,H (106) were known compounds. Although the compounds had similar cytochalasin skeleton, they displayed different inhibition on lipopolysaccharide-induced nitric oxide (LPS-induced NO) production. It was deduced that both hydroxyl (C-18) and acetyl (C-21) groups present in cytochalasin H enhanced its bioactivity [15]. Besides, cytochalasins has been found to play a crucial role in interrupting the formation of filamentous actin. They are able to modify cell motility and morphology, adherence or secretion and drug resistance. These properties are essential for the development of chemotherapeutic agents in drug resistant cancer cells [14]. Therefore, multiple chemical syntheses that focus on the various functional groups present in cytochalasins may aid in the discovery of novel bioactive compounds.

Depsidones

On the other hand, another class of compounds known as depsidones has been found in Diaporthe sp.. In 2018, the discovery of diaporthols A and B (73-74) produced by Diaporthe sp. ECN-137 was reported by Nakashima et al. The compounds had tetracyclic skeletons, which mimicked the core structure of purpactin A. They were examined for their activity on transforming growth factor-β1 (TGF-β1) induced wound closure of MDA-MB-231 breast cancer cells [16]. The TGF-β1, one of the mRNAs detected in most primary breast cancers, has a significant function in apoptosis, angiogenesis and cancer progression [17]. Diaporthols A and B isolated were appeared to suppress the TGF-β1-induced wound closure at 20 μM, hence signifying their potential as tumor inhibitors [16]. Reports have also emphasized that such compounds are active inhibitors in cholesteryl ester transfer protein (CETP) and acyl-CoA:cholesterol acyltransferase (ACAT), which promote the therapeutic potential of atherosclerosis [18]. Therefore, different derivatives of depsidones indicate the potential of developing new drugs.

Azaphilones

Azaphilones, which consist of a highly oxygenated pyranoquinone bicyclic core skeleton, has received a great deal of scientific interest recently due to their interesting structural features and promising biological activities [19]. In 2018, six new polyoxygenated chloroazaphilones (isochromophilones A-F, (61-66)) and their analogues were obtained from the ethyl acetate extract of Diaporthe sp. SCSIO 41011. Among the newly isolated azaphilones, isochromophilones A and B were the first described azaphilones with the absence of a carbonyl group at C-6. Upon being assessed for their cytotoxicity on ACHN, OS-RC-2 and 786-O human renal carcinoma cells; isochromophilone D displayed cytotoxicity against 786-O cells with the lowest IC₅₀ (8.9 μM). In cell cycle arrest and cell apoptosis, the compound induced total apoptotic cells at 56% (48 h) and 98% (72 h) at 10 μM [20]. Apart from this, various bioactivities, such as inhibitions of glycoprotein gp120-CD4 binding, protein Grb2-SH2 and MDM2-p53 interactions, heat shock protein 90 (Hsp90) and dihydrofolate reductase, were reported for azaphilones [19]. Considering the biological diversity of azaphilones, syntheses that alter the side chains or the cyclic moieties should be weighed in to assess their structure-activity relationships, so as to explore their potential for drug discovery.

Other Organic Compounds

Other metabolites isolated from Diaporthe sp. include alkaloids, terpenoids, pyranones, benzophenones, bisanthraquinones, xanthones, acid derivatives, alcohols and amides. In 2017, Cui and colleagues isolated six new alkaloids, namely diaporphasines A-D (36-39), meyeroguillines C and D (41-42) along with known meyeroguilline A (40), 5-deoxybostrycoidin (43) and fusaristatin A (44), from D. phaseolorum SKS019. They were described for the first time in Diaporthe sp., as containing the skeletons of chromeno[3,2-c]pyridines and isoindolinones. 5-Deoxybostrycoidin, which was initially isolated from fungus Nectria haematococca, had induced cytotoxicity against human breast cancer MDA-MB-435 and human non-small cell lung cancer NCI-H460 cells with IC₅₀ of 5.32 and 6.57 μM, respectively [21, 22]. Meanwhile, a new lanostanoid, known as 19-nor-lanosta-5(10),6,8,24-tetraene-1α,3β,12β,22S-tetraol (5) was obtained from Diaporthe sp. LG23. The compound is a rare tetracyclic triterpenoid with an unusual aromatic ring B system, coupled with the loss of a common methyl group at C-19. It exhibited remarkable antibacterial activity on Gram-positive Streptococcus pyogenes at 0.1 μg/ml, when compared to gentamicin (10.0 μg/ml) [23]. Additionally, two rare cyclic 10-membered nonenolides, known as xylarolides A and B (92-93), were obtained from Diaporthe sp. isolated from Datura inoxia Mill. It is noteworthy to highlight that xylarolide A showed potent growth inhibition on human pancreatic cancer MIAPaCa-2 and human prostate cancer PC-3 cells with IC₅₀ of 20 and 14 μM, respectively [24].

Endophytic Diaporthe sp. is an interesting group of microorganisms that provide a rich source of bioactive and chemically diverse compounds with medicinal potential. In this minireview, a range of rare carbon skeletons of compounds isolated from Diaporthe sp. is discussed. They have been reported to possess cytotoxic, antimicrobial, anti-hypercholesterolemic, anti-tuberculosis, anti-fibrosis, anti-diabetic, antioxidant and anti-inflammatory properties. The discovered compounds may act as potential leads for scientists to synthesize potent analogues. It has been observed that most of the bioactivity studies of Diaporthe sp. are focused on in vitro. Therefore, in depth in vivo and a series of mechanism studies regarding these bioactive compounds are in need for their future application as therapeutic agents.

Fig. 1A.

Bioactive compounds (1-35) isolated from endophytic Diaporthe sp.

Fig. 1B.

Bioactive compounds (36-68) isolated from endophytic Diaporthe sp.

Fig. 1C.

Bioactive compounds (69-106) isolated from endophytic Diaporthe sp.

Fig. 1D.

Bioactive compounds (107-122) isolated from endophytic Diaporthe sp.