Skip to main content
PeerJ logoLink to PeerJ
. 2022 Dec 1;10:e13787. doi: 10.7717/peerj.13787

Litter inputs and standing stocks in riparian zones and streams under secondary forest and managed and abandoned cocoa agroforestry systems

Haialla Carolina Rialli Santos Brandão 1, Camila Andrade Coqueiro Moraes 2, Ana Paula Silva 2, José Francisco Gonçalves Júnior 3, Renan de Souza Rezende 4, Daniela Mariano Lopes da Silva 5,
Editor: Mark Gessner
PMCID: PMC9744167  PMID: 36518290

Abstract

Background

Cocoa is an important tropical tree crop that is mainly cultivated in agroforestry systems (AFS). This system, known as cabruca in northeastern Brazil, holds promise to reconcile biodiversity conservation and economic development. However, since cocoa AFS alters forest structure composition, it can affect litter dynamics in riparian zones and streams. Thus, our objective was to determine litter inputs and standing stocks in riparian zones and streams under three types of forest: managed cocoa AFS, abandoned cocoa AFS, and secondary forest.

Methods

We determined terrestrial litter fall (TI), vertical (VI) and lateral (LI) litter inputs to streams, and litter standing stocks on streambeds (BS) in the Atlantic Forest of northeastern Brazil. Litter was collected every 30 days from August 2018 to July 2019 using custom-made traps. The litter was dried, separated into four fractions (leaves, branches, reproductive organs, and miscellaneous material) and weighed.

Results

Terrestrial litter fall was similar in all forests, ranging from 89 g m−2 month−1 in secondary forest (SF) to 96 g m−2 month−1 in abandoned cocoa AFS (AC). Vertical input were higher in AC (82 g m−2 month−1) and MC (69 g m−2 month−1) than in SF (40 g m−2 month−1), whereas lateral input were higher in MC (43 g m−2 month−1) than in AC (15 g m−2 month−1) and SF (24 g m−2 month−1). Standing stocks followed the order SF > AC > MC, corresponding to 425, 299 and 152 g m−2. Leaves contributed most to all litter fractions in all forests. Reproductive plant parts accounted for a larger proportion in managed AFS. Branches and miscellaneous litter were also similar in all forests, except for higher benthic standing stocks of miscellaneous litter in the SF. Despite differences in the amounts of litter inputs and standing stocks among the forests, seasonal patterns in the abandoned AFS (AC) were more similar to those of the secondary forest (SF) than the managed AFS, suggesting potential of abandoned AFS to restore litter dynamics resembling those of secondary forests.

Keywords: Riparian vegetation, Cocoa, Tropical streams, Litterfall, Agroforestry system

Introduction

Riparian zones are important for the functioning of headwater streams (Vannote et al., 1980; Naiman, Décamps & Mcclain, 2005), including in tropical zones (Gonçalves Júnior et al., 2014; Bambi et al., 2016; Rezende et al., 2017a; Rezende et al., 2019; Calderón et al., 2019). The riparian canopy limits instream primary production and provides allochthonous organic matter to stream and riparian food webs in the form of litter, which increases heterotrophic metabolism (Gonçalves Júnior et al., 2014; Rezende et al., 2019). Therefore, litter dynamics are a fundamental characteristic of headwater streams (Abelho & Graça, 1996; Neres-Lima et al., 2017). In the tropics, litter is typically supplied throughout the year (Tonin et al., 2017), although this pattern varies among forest types (Lindman et al., 2017; Seena et al., 2017), largely driven by precipitation and temperature regimes (Bambi et al., 2016; Tonin et al., 2017). Changes in the structure and composition of riparian forests can affect the supply of litter to streams and their riparian zones (Delong & Brusven, 1994; Ferreira et al., 2019; Wild, Gücker & Brauns, 2019), as well as in-stream litter dynamics (Sutfin, Wohl & Dwire, 2016; Tiegs et al., 2019).

Many tropical forests are jeopardized by rapid deforestation and expansion of agriculture (Bawa et al., 2004). This includes the Atlantic Forest of Brazil as one of the most threatened tropical forests worldwide (Winbourne et al., 2018; Taubert et al., 2018). Agroforestry systems (AFSs), however, have potential to partly reconcile the conservation of tropical forest patches with economic development (Cassano et al., 2009; Schroth et al., 2011). One example is the cultivation of cocoa in the Atlantic Forest of northeast Brazil where cocoa trees (Theobroma cacao L.) are grown in AFS that cover a large portion of the remnant Atlantic Forest (Piasentin, Saito & Sambuichi, 2014). The cocoa trees are planted in the shade of native forest trees (dominant and codominant strata) and are surrounded by natural vegetation. Therefore, cocoa AFS are thought to cause less environmental impact than other crop systems (Johns, 1999; Sambuichi, 2002), with benefits for local biodiversity (Faria et al., 2007; Cassano et al., 2009; Schroth et al., 2011). Important processes such as the incorporation of large amounts of organic matter into the forest soil are indeed maintained in cocoa AFS (Beer et al., 1998; Gama-Rodrigues et al., 2010; Barreto et al., 2011; Fontes et al., 2014; Costa et al., 2018). Nevertheless, changes in the vegetation structure of AFS compared to unmanaged forest may affect the amount of litter deposited in riparian zones (Delong & Brusven, 1994; Wild, Gücker & Brauns, 2019) and supplied to streams (Gonçalves Júnior et al., 2014).

Studies on litter dynamics in tropical streams and their riparian zones are scarce, especially under cocoa AFS, although some evidence suggests that replacing cocoa AFS changes the cycling of carbon and nitrogen in streams (Costa et al., 2017; Souza et al., 2017; Costa et al., 2018), possibly as a result of altered litter supply by riparian vegetation. Thus, the current study aimed to assess the influence of cocoa AFS on litter dynamics by determining differences in secondary forest and managed and abandoned AFS on litter inputs and benthic standing stocks in streams and riparian zones in these forests. We expected that (i) managed and abandoned cocoa AFS produce more litter than secondary forest where forest structure (Curvelo et al., 2009; Dawoe, Isaac & Quashie, 2010; Fontes et al., 2014) and soil carbon stocks differ (Gama-Rodrigues et al., 2010, Costa et al., 2018) and nutrients are rapid cycled (Nair et al., 1999); (ii) streams running through forests with high litter production tend to receive larger amounts of litter (França et al., 2009; Gonçalves Júnior et al., 2014), resulting in greater litter standings stocks in the streambeds (Webster et al., 1994; Lisboa et al., 2015); and (iii) seasonal patterns of litter inputs and standing stocks reflect precipitation patterns because water availability controls litter production (Tonin et al., 2017).

Methods

Study area

The study was conducted in the riparian zones of three small watersheds (Fig. 1) representing secondary forest (E 485415, N 8397615), abandoned cocoa AFS (E 481551, N 8364478), and managed cocoa AFS (E 448466, N 8363187). All sites are located in the Atlantic Forest of southern Bahia in northeast Brazil. The climate is wet tropical (hot and humid with no defined dry season, Af according to the Köppen classification) with annual rainfall ranging from 1,100 to 2,200 mm. The study streams are second-order according to the Strahler classification. Daily rainfall data were obtained from the website of the Real-Time Climate Monitoring Program of the Northeast Region (PROCLIMA, Schwetzingen, Germany; http://proclima.cptec.inpe.br) for the municipalities of Itacaré, Ilhéus, and Barro Preto (Fig. 2).

Figure 1. Location of study sites in secondary forest (SF), a managed AFS (MC) and an abandoned AFS (AC) in northeastern Brazil.

Figure 1

Map database: Instituto Brasileiro de Geografia e Estatística (Brazilian territory, cities and hydrography, 2017); Ministério do Meio Ambiente (Serra do Conduru State Park limits, 2012), Fundação SOS Mata Atlântica and Instituto Nacional de Pesquisas Espaciais (Atlantic Forest remnants, 2016).

Figure 2. Daily precipitation at the study sites in secondary forest (SF), a managed AFS (MC) and an abandoned AFS (AC) in northeastern Brazil.

Figure 2

The secondary forest, which covers 9,275 ha, is located in a conservation area (Serra do Conduru State Park-License 2017-013654/TEC/PESQ-0014) (Martini et al., 2007). The vegetation is a mosaic of different developmental stages, including secondary forest and remnants of mature forests with different degrees of selective logging in the past (Winbourne et al., 2018). The uniform canopy of the forest exceeds 25 m in height and includes a few emerging individual trees, epiphytes, large lianas, and a dense understory (Martini et al., 2007; Costa et al., 2018). Tree species density levels in the area were high at all sites, independent of forest successional stage; old growth forest totaled 144 species, old logged forest had 137 species, and recently logged forest 134. Of the species recorded in the Serra do Conduru State Park, 51.4% are endemic to the Atlantic Forest and 26% occur only in the south of Bahia (Martini et al., 2007). The abandoned AFS covers 73.4 ha and is located in an AFS (Santa Cruz, CA, USA) where crop management was abandoned 20 years before the present study. Old cocoa trees and other, irregularly distributed species such as jackfruit, erythrina, embaúba, and jequitibá trees (Argôlo, 2009) resulted in a medium level of shading (70%). The managed AFS is located in another AFS (Nova Harmonia) with a total area of 89.8 ha. It comprises areas under cocoa production, a forest patch in the central portion, and two areas undergoing regeneration (Santos et al., 2016). Management consists of pruning cocoa trees every 6 months, with the biomass left in place (Costa et al., 2018), complemented by vegetation cutting, and some liming for soil amelioration. The cocoa plants were spaced at 3 m × 3 m and intercropped with introduced shade trees (erythrina), according to the proposed management for the area.

Litter inputs and benthic standing stocks

Litter inputs and benthic standing stocks were determined from August 2018 to July 2019. Details of the methodology are described in Gonçalves Júnior et al. (2014) and Bambi et al. (2016). Terrestrial litter fall (TI), vertical (VI) and lateral (LI) litter inputs to streams, and litter deposited on the streambeds (benthic standing stock–BS) were assessed along 100 m stream stretches at each location (Fig. 3).

Figure 3. Sampling design to determine litter inputs and standing stocks in riparian zone and streams.

Figure 3

TI deposited on the riparian soil represents the amount of litter that can potentially be transported to the stream. It was collected with 10 nets (1 mm mesh, 2.5 m2 total area), five on both sides of the streams, installed 1 m above the ground at 20 m distance from one another in the riparian zone. VI represents litter that falls directly into the streams from the riparian canopy. It was collected with 27 buckets (30 cm diameter, 1.9 m2 total area) fixed to trees, perpendicular to the stream channel at a height of approximately 2 m. The buckets were arranged in three groups of nine, spaced approximately 30 m apart with a distance of 1 m between the individual buckets. Small holes in the bottom of the buckets allowed any collected water to drain. LI represents the indirect input of litter by lateral movement from the forest floor to the stream due to gravity, runoff, wind, or animal action. LI was collected with 10 nets (1 mm mesh, 0.5 m length, 1.5 m2 total area) arranged at ground level along the stream margins, five on both sides of the streams. Total litter input to the streams was calculated as the sum of lateral and vertical inputs. Finally, benthic standing stocks represent the litter accumulated on the streambed. It was estimated by taking Surber samples (0.25 mm mesh, 0.45 m2 total area), five in each stream at 20 m distance from one another (Fig. 3).

The litter trapped in the nets and buckets was collected at monthly intervals and sorted into four fractions upon return to the laboratory: leaves, branches (i.e., woody pieces less than 25 cm in length), reproductive organs such as flowers and fruits, and miscellaneous material (i.e., unidentified plant matter and animal remains). The sorted litter was dried in an oven at 60 °C for 72 h and weighed. TI, VI and LI were expressed in g dry mass m−2 d−1, LI per m2 was calculated by dividing the collected litter mass by the trap width and multiplying the result by two (to account for inputs from both stream banks) and by the mean channel width (Pozo et al., 2009). The annual litter inputs to the streams and riparian zones corresponds to the sum of the mean monthly litter inputs during the study year (Table 1).

Table 1. Absolute monthly inputs and standing stocks (g m−2) as well as relative contributions (%) of various litter fractions to litter inputs and standings stocks in streams and riparian zones.

Litter
fraction
Forest type Terrestrial Vertical input Lateral input Standing stock
Mean
(g m−2)
Range
(g m−2)
Contribution (%) Mean
(g m−2)
Range
(g m-²)
Contribution (%) Mean
(g m−2)
Range
(g m−2)
Contribution (%) Mean
(g m−2)
Range
(g m−2)
Contribution (%)
Leaves SF 48 0–76 65 27 0–122 67 18 0–164 74 153 6–483 36
MC 50 0–193 56 30 0–194 41 28 0–441 65 91 0–422 60
AC 64 4–322 67 56 0–287 69 12 0–5,160 80 182 30–424 61
Branches SF 6 0–92 8 3 0–201 8 3 0–83 13 81 0–431 19
MC 2 0–48 3 3 0–137 4 2 0–103 5 10 0–95 7
AC 12 0–75 12 6 0–86 7 1 0–99 7 48 0–386 16
Reproductive
parts
SF 3 0–32 4 1 0–33 2 0 0–15 0 7 0–76 2
MC 25 0–398 28 33 0–493 46 7 0–389 16 23 0–289 15
AC 6 0–73 6 7 0–306 9 1 0–62 7 2 0–57 1
Miscellaneous
litter
SF 17 0–137 23 9 0–108 23 3 0–63 13 185 0–1,432 43
MC 12 0–217 13 7 0–137 9 6 0–293 14 28 0–395 18
AC 14 0–46 15 13 0–56 15 1 0–47 7 67 0–382 22
Total SF 74 8–221 40 0–230 24 0–215 425 28–2,050
MC 89 0–511 69 0–638 43 0–816 152 0–559
AC 96 4–339 82 0–521 15 0–303 299 78–726

Note:

Secondary Forest (SF), Managed AFS (MC) and Abandoned AFS (AC).

Statistical analysis

Differences among the forests in litter inputs and benthic standing stocks were assessed by generalized linear mixed-effects models (glmer function in the lme4 package of R) with forest type (=site), time and the interaction of forest type and time as predictive variables (Bates et al., 2015). We considered trap and time as random factors to account for the pseudoreplicated design of the study, since the three forest types were represented only by a single site each. Separate models were run for each of the plant organic matter fractions (leaves, branches, reproductive organs, miscellaneous material). P-values were obtained by likelihood ratio tests (chi-square distribution) of the full model against a partial model without the explanatory variable. All models were tested for error distribution by using the hnp package and function in R, and corrected for over-or underdispersion. Differences in litter inputs and standing stocks among forest types (sites) were also assessed by using bootstrapped 95% confidence intervals, which were computed by the bias-corrected and accelerated (BCa) method using the boot package and function in R, based on 1,000 bootstrap replicates (Davison & Hinkley, 1997; Canty & Ripley, 2016). Differences were considered statistically significant when the bootstrapped confidence intervals did not overlap.

Given their flexibility, generalized additive mixed models (GAMM) were used as an additional approach to explore the seasonal patterns of litter inputs (i.e., vertical, lateral and terrestrial inputs) and standing stocks (Tonin et al., 2017, 2019). The input of leaves, branches, reproductive matter, or miscellaneous material over the 12-months study period was used as a normally distributed (identity-link function) predictor, nested within sites, as a random component of the GAMM models. Trap and time were used as random factors in the GAMM models. The degree of smoothing in an additive model is expressed as effective degrees of freedom (edf). Higher edf values indicate a lower degree of linearity (i.e., here variation over time), with a value of 1 indicating a perfectly linear effect. The additive mixed models were fitted by using the by command in the mgcv package in R. Validation was used to estimate the optimal degree of smoothing (Wood, 2017). The residual spread within models among sampling dates was measured by using the varIdent function in R.

Results

Leaf material was the single largest litter fraction, with percentages >60% for TI and VI and >70% for LI in the secondary forest and abandoned AFS (Fig. 4, Table 1). In the managed AFS, the percentages of TI, VI, and LI were 56%, 41%, and 65%, respectively. Leaves also represented large portions of the instream standing stock of litter, 61% in the abandoned AFS, 60% in the managed AFS, and 36% in the secondary forest. Miscellaneous types of organic matter was the second most abundant litter fraction of TI and VI observed in secondary forest and abandoned AFS (23% and 15% for TI and VI). Miscellaneous litter accounted for 43% of the standing stock in the secondary forest (Table 1). Branches were also a large portion of the litter standing stock in secondary forest (13%) and abandoned AFS (7%) (Table 1). Because of their sporadic and transient occurrence, reproductive parts were a low proportion of the total litter, except in managed AFS (Table 1), where they accounted for a higher proportion in all types of litter inputs and standing stocks (Figs. 4C, 4H, 4M and 4R). Branches and miscellaneous litter were generally similar in all forests, except for higher benthic standing stocks of miscellaneous litter in the secondary forest (Fig. 4).

Figure 4. (A–T) Inputs and standing stocks of various litter fractions in streams and riparian zones of secondary forest (SF), a managed AFS (MC) and an abandoned AFS (AC).

Figure 4

Black circles and vertical lines represent means and bootstrapped 95% confidence intervals. Different numbers indicate significant differences of means as judged based on non-overlapping confidence intervals.

The greatest seasonal variation in litter inputs and standing stocks was found for leaves, with the highest contributions during the transition between dry and rainy months and two seasonal peaks in some cases (Figs. 5A and 5C). Seasonal variation was less pronounced and generally not significant for branches, reproductive plant parts, and miscellaneous litter (Figs. S1 to S3). Vertical litter inputs showed seasonal patterns for leaves in the secondary forest (effective degrees of freedom—edf = 5.5; Fig. 5D) and abandoned AFS (edf = 5.1; Fig. 5E), with higher contributions during the rainy months, from November to February, in both SF and AC. In managed AFS, the contribution of leaves decreased linearly over time, as reflected by an edf value close to 1 (Fig. 5F). Terrestrial leaf inputs showed a sinusoidal pattern is the secondary forest (Fig. 5A) and managed AFS (Fig. 5C), which was reflected by high edf values of 7.0 and 6.7, respectively. A peak in the rainiest months was observed in all three forests but the second peak was missing in the abandoned AFS (Fig. 5B). The largest lateral inputs of leaves in managed AFS were observed from January to March (edf = 1.9; Fig. 5F), the period of least rainfall (Fig. 2). Standing stocks of leaf litter showed different trends than leaf litter inputs. The sine curve shifted to the right in SF, indicating that leaf input occurred just after the rainiest periods (peak in April; edf = 3.5; Fig. 5J) and abandoned AFS (minimum in November and maximum in February; edf = 5.6; Fig. 5K). No seasonal patterns were observed for leaf litter of managed AFS (edf = 1; Figs. 5F, 5I and 5L).

Figure 5. (A–L) Temporal changes of litter inputs (g dry mass m−2 d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), an abandoned AFS (AC) and a managed AFS (MC).

Figure 5

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

Total annual litter fall in the riparian zone of the abandoned AFS, managed AFS, and secondary forest was 1,889, 1,016, and 1,176 g m−2 yr−1, respectively. In the abandoned and managed AFS, 56% of the terrestrial litter input (TI) was deposited on the forest floor and 44% directly entered the streams through vertical litter input (VI). In the secondary forest, the percentages of TI and VI were 63% and 37%, respectively. In the managed AFS, 61% of the total litter fall in the riparian zone entered the stream by lateral movement and 39% remained in the riparian zone. In the abandoned AFS, only 15% entered the stream and 85% remained in the riparian zone. The corresponding percentages in the secondary forest were 30% and 70%. The average annual total litter standing stock in the managed AFS was more than two times lower than in the abandoned AFS and more than three times lower than in the secondary forest (Fig. 6).

Figure 6. Summary of annual litter inputs and average standing stocks (g dry mass m−2) in streams and riparian zones.

Figure 6

SF, secondary forest, AC, abandoned AFS and MC, managed AFS.

Discussion

Riparian zones with natural vegetation are important for the structural and functional integrity of streams (Gonçalves Júnior et al., 2014, Rezende et al., 2017b). Our results on the contribution of leaf litter in forests subject to different management practices are important information to assess the role of cocoa agroforestry in efforts to restore impacted forests in northeastern Brazil. Previous studies in the area have reported that the cocoa agroforestry system alters the biogeochemistry of C and N in streams and soils (Costa et al., 2017, 2018; Souza et al., 2017). However, these studies could not determine which forest attributes determined the observed changes in C and N cycling. Although differences between forests could be associated with different management regimes, it is necessary also to consider the potential influence of other factors that could not be evaluated in those study.

High litter production in the abandoned AFS may be due to the riparian vegetation structure (Gonçalves Júnior et al., 2014; Rezende et al., 2017a) and successional stage during forest recovery (Sambuichi & Haridasan, 2007; Rolim et al., 2017). Factors such as abundant deposits of crop biomass (Beer et al., 1998), which are related to high carbon stocks in the soil (Gama-Rodrigues et al., 2010; Costa et al., 2018), and rapid nutrient cycling in these systems (Nair et al., 1999) are likely to play a role. The pattern of litter inputs in the abandoned AFS was more similar to that in the secondary forest than the managed AFS. Streams in abandoned AFS are usually lined by riparian vegetation (Ferreira et al., 2019) similar to that of streams in secondary forest, whereas in managed AFS, native shade trees are replaced by species with high commercial value (Cassano et al., 2009, Piasentin, Saito & Sambuichi, 2014). Additional factors linked to higher litter production in abandoned AFS (Gama-Rodrigues et al., 2010) include greater stand age of the vegetation. Moreover, leaf surface area may be greater in the shaded stands where low solar radiation limits rates of photosynthesis (Beer et al., 1998). These factors tend to increase litter production, to which leaves contribute the largest fraction (Gonçalves Júnior et al., 2014; Bambi et al., 2016; Tonin et al., 2017).

Higher litter production in the abandoned AFS is reflected in the observed spatial and seasonal patterns of litter inputs and standing stocks, which were also closer to those in the secondary forest than in the managed AFS. This indicates that abandoned AFS with little human intervention may provide favorable conditions for forest regeneration (Rolim et al., 2017) and could thus be valuable strategic sites for the conservation of riparian forest remnants in these agroforestry systems of Brazil (Faria et al., 2007; Cassano et al., 2009; Schroth et al., 2011; Sambuichi et al., 2012). The presence of pioneer species in abandoned AFS could be a critical factor promoting this regeneration by facilitating ecological succession (Rolim & Chiarello, 2004, Sambuichi & Haridasan, 2007; Sambuichi et al., 2012).

Crop management, which involves hoeing and soil cleaning (Sambuichi et al., 2012; Mello & Gross, 2013), may be a critical factor accounting for the observed tendency of greater lateral litter inputs to streams in managed AFS. Possible mechanisms include facilitation of litter leaching and movement of litter along streams by runoff (Afonso, Henry & Rodella, 2000; Wantzen et al., 2008) as well as effects on the structure and composition of the tree vegetation (Deheuvels et al., 2014). Furthermore, some management practices introduce exotic species necessary for cultivation (Sambuichi, 2002; Piasentin, Saito & Sambuichi, 2014; Rolim et al., 2017) and involve thinning of the vegetation to obtain the desired shade levels for crop production (Johns, 1999).

The management practices in cocoa cultivation and phenology of the shade species may also have determined the greater contribution of reproductive plant parts in the managed AFS. This observation is related to the high proportion of exotic species (e.g., Artocarpus heterophyllus, Spondias mombin and, particularly in this study, Clitoria fairchildiana), which show a different phenology than native riparian forests (Sambuichi & Haridasan, 2007; Sambuichi et al., 2012). Furthermore, variation in the size, shape, texture and anatomy of reproductive plant parts of different tree species in different forest types could account for the higher contribution of this litter fraction in managed AFS. This applies particularly to fruits of the legume Clitoria fairchildiana, the species contributing most to the reproductive plant parts in litter vertical inputs and standing stocks in this forest. The large dry and dehiscent fruits of the tree are 25 to 30 cm long and 2.6 to 2.9 cm wide (Silva & Moro, 2008). A potentially higher nutritional quality of such reproductive plant parts compared to leaves may favor rapid decomposition of the litter supplied to tropical streams. However, the fruits of Clitoria fairchildiana and other species in the managed AFS we investigated may not provide a high-quality nutritional resource (Rezende et al., 2017c), and we do not currently have data to evaluate the consequences for litter decomposition.

Litter standing stocks in ecosystems are the net result of litter inputs and losses by movement and decomposition (Elosegi & Pozo, 2005; Tank et al., 2010). The high standing stocks we observed in streams of secondary forests could imply high inputs (França et al., 2009; Lisboa et al., 2015; Bambi et al., 2016) combined with slow decomposition and downstream transport (Gonçalves Júnior et al., 2014; Rezende et al., 2017a), and the high proportion of miscellaneous matter in the secondary forest stream could be due to the particularly slow decomposition of this organic matter fraction. Effective litter retention favors long residence times in streams (Bilby & Likens, 1980) and the generation of small organic particles released during decomposition (Gessner, Chauvet & Dobson, 1999, Boyero et al., 2011) instead of coarse litter being transported downstream. This contrasts with the situation in the managed AFS where cocoa leaves are the predominant litter type, the high lignin and cellulose concentrations of which slow litter decomposition in the soil of cocoa AFS (Dawoe, Isaac & Quashie, 2010) and likely also in streams (Tank et al., 2010; da Silva et al., 2017). In the managed AFS, in contrast, it may have been the high proportion of recalcitrant reproductive plant parts (see above) that favored high benthic standing stocks. This type of litter was rare in the secondary forest and abandoned AFS.

Our finding that litter inputs and standing stocks in the abandoned AFS were more similar to those in the secondary forest than in the managed cocoa AFS suggests that abandoning management measures, such as litter removal and soil cleaning, could create favorable conditions for reestablishing natural litter dynamics in riparian zones and streams of former AFSs. The capacity of tree species richness to regenerate is high in those forests (Sambuichi & Haridasan, 2007), if surrounding vegetation remains intact to provide a seed source for forest recovery (Rolim et al., 2017). It appears that the absence of management in the riparian zone of abandoned AFS sufficiently reduces pressure on species during regeneration (Rolim et al., 2017) for the phenology of species to become the main factor determining litter dynamics. Intensive management, in contrast, overrides the importance of phenology by altering the structure of riparian plant communities (Delong & Brusven, 1994; Ferreira et al., 2019).

Conclusion

Although our study was restricted to one location for each of the three investigated forest types (SF, AC and MC), our findings are a starting point to evaluate differences in litter inputs and standing stocks between those forests. The observed similarity with litter inputs and standing stocks in the secondary forest suggests potential of the abandoned AFS to provide favorable conditions for restoring natural litter dynamics in streams and riparian zones. However, future investigations are needed to elucidate the nutritional quality of litter and its variation depending on the composition and structure of the riparian vegetation.

Supplemental Information

Supplemental Information 1. Temporal changes of branch litter inputs (g dry mass m−2d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), abandoned cabruca (AC) and managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-1
Supplemental Information 2. Temporal changes of inputs (g dry mass m−2d−1) and standing stocks (g dry mass m−2) of reproductive plant parts in secondary forest (SF), abandoned cabruca (AC) and managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-2
Supplemental Information 3. Temporal changes of miscellaneous litter inputs (g dry mass m−2d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), an abandoned cabruca (AC) and a managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-3
Supplemental Information 4. Temporal changes of total input (g dry mass m−2d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), abandoned cabruca (AC) and managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-4
Supplemental Information 5. Simplified two-way factorial generalized linear mixed-effects analysis to test for effects of time (month), site (SF, AC, and MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on vertical input.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood.

DOI: 10.7717/peerj.13787/supp-5
Supplemental Information 6. Simplified two-way factorial generalized linear mixed-effects analysis to test for effects of time (month), site (SF, AC and MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on terrestrial input.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-6
Supplemental Information 7. Simplified two-way factorial generalized linear mixed-effects analysis to test for the effects of time (month), site (SF, AC and MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on lateral input.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-7
Supplemental Information 8. Simplified two-way factorial generalized linear mixed-effects analysis to test for the effects of time (month), site (SF, AC and, MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on standing stocks.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-8
Supplemental Information 9. Simplified two-way factorial generalized linear mixed-effects analysis to test for the effects of time (month), site (SF, AC, MC) and the interaction of both for total litter on terrestrial, vertical, lateral input and standing stock.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-9
Supplemental Information 10. Raw data of litter inputs and stock.

Lateral input (LI), Terrestrial input (TI), Vertical input (VI), Benthic stock (BS)

DOI: 10.7717/peerj.13787/supp-10

Acknowledgments

We are grateful to Mr. Hermann Rehem for granting us permission to collect data on his farm. We also appreciate the support and partnership of the Aquariparia research group at the Universidade de Brasilia–UnB. Finally, we thank Ms. Cipriana Leme for language editing.

Funding Statement

This work was supported by UESC (PROPP register 0220.1100.1771), CNPq (403945/2021-6), and FAPESB scholarship (TO 715/2017). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Haialla Carolina Rialli Santos Brandão conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Camila Andrade Coqueiro Moraes performed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft.

Ana Paula Silva performed the experiments, prepared figures and/or tables, and approved the final draft.

José Francisco Gonçalves Júnior conceived and designed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Renan de Souza Rezende analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Daniela Mariano Lopes da Silva conceived and designed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Field Study Permissions

The following information was supplied relating to field study approvals (i.e., approving body and any reference numbers):

Field experiment in Serra do Conduru State Park was approved by INEMA (Process 2017-013654/TEC/PESQ-0014).

Data Availability

The following information was supplied regarding data availability:

The raw data are available in the Supplemental Files.

References

  • Abelho & Graça (1996).Abelho M, Graça AS. Effects of eucalyptus afforestation on leaf litter dynamics and macroinvertebrate community structure of streams in Central Portugal. Hydrobiologia. 1996;324(3):195–204. doi: 10.1007/BF00016391. [DOI] [Google Scholar]
  • Afonso, Henry & Rodella (2000).Afonso AAO, Henry R, Rodella RCSM. Allochthonous matter input in two different stretches of a headstream (Itatinga, São Paulo, Brazil) Brazilian Archives of Biology and Technology. 2000;43(3):335–343. doi: 10.1590/S1516-89132000000300014. [DOI] [Google Scholar]
  • Argôlo (2009).Argôlo LMH. Avaliação de genótipos de Heliconia spp. sob cultivo a pleno sol e cabruca. Master’s Thesis. Universidade Estadual de Santa Cruz. 2009.
  • Bambi et al. (2016).Bambi P, Rezende RS, Feio MJ, Leite GFM, Alvin E, Quintão JMB, Araújo F, Gonçalves Júnior JF. Temporal and spatial patterns in inputs and stock of organic matter in savannah streams of central Brazil. Ecosystems. 2016;20(4):757–768. doi: 10.1007/s10021-016-0058-z. [DOI] [Google Scholar]
  • Barreto et al. (2011).Barreto PA, Gama-Rodrigues EF, Gama-Rodrigues AC, Fontes AG, Polidoro JC, Moço MKS, Machado RC, Baligar VC. Distribution of oxidizable organic C fractions in soils under cacao agroforestry systems in Southern Bahia. Brazil Agroforestry Systems. 2011;81(3):213–220. doi: 10.1007/s10457-010-9300-4. [DOI] [Google Scholar]
  • Bates et al. (2015).Bates D, Mächler M, Bolker BM, Walker SC. Fitting linear mixed-effects models using lme4. Journal of Statistical Software. 2015;67(1):1–48. doi: 10.18637/jss.v067.i01. [DOI] [Google Scholar]
  • Bawa et al. (2004).Bawa KS, Kress WJ, Nadkarni NM, Lele SR, Janzen DH, Lugo AE, Ashton PS, Lovejoy TE. Tropical ecosystems into the 21st century. Science. 2004;306(5694):227–228. doi: 10.1126/science.306.5694.227b. [DOI] [PubMed] [Google Scholar]
  • Beer et al. (1998).Beer J, Muschler R, Somarriba E, Kass D. Shade management in coffee and cacao plantations. Agroforestry Systems. 1998;38(1/3):139–164. doi: 10.1023/A:1005956528316. [DOI] [Google Scholar]
  • Bilby & Likens (1980).Bilby RE, Likens GE. Importance of organic debris dams in the structure and function of stream ecosystems. Ecology. 1980;61(5):1107–1113. doi: 10.2307/1936830. [DOI] [Google Scholar]
  • Boyero et al. (2011).Boyero L, Pearson RG, Gessner MO, Barmuta LA, Ferreira V, Graça MAS, Dudgeon D, Boulton AJ, Callisto M, Chauvet E, Helson JE, Bruder A, Albariño RJ, Yule CM, Arunachalam M, Davies JN, Figueroa R, Flecker AS, Ramírez A, Death RG, Mathooko JM, Mathuriau C, Gonçalves JF, Moretti MC, Jinggut T, Lamothe ST, M’Erimba C, Ratnarajah L, Schindler MH, Castela J, Buria LM, Cornejo A, Villanueva VD, West DC. A global experiment suggests climate warming will not accelerate litter decomposition in streams but might reduce carbon sequestration. Ecology Letters. 2011;14(3):289–294. doi: 10.1111/j.1461-0248.2010.01578.x. [DOI] [PubMed] [Google Scholar]
  • Calderón et al. (2019).Calderón CC, Rezende RS, Calor A, Dahora JAS, Aragao LN, Guedes L, Caiafa AN, Medeiros AO. Temporal dynamics of organic matter, hyphomycetes and invertebrate communities in a Brazilian savanna stream. Community Ecology. 2019;20(3):301–313. doi: 10.1556/168.2019.20.3.10. [DOI] [Google Scholar]
  • Canty & Ripley (2016).Canty AJ, Ripley B. Boot: bootstrap R (S-Plus) functions. 2016. R-package version 1.3-10.
  • Cassano et al. (2009).Cassano CR, Schroth G, Faria D, Delabie JHC, Bede L. Landscape and farm scale management to enhance biodiversity conservation in the cocoa producing region of southern Bahia. Brazil Biodiversity Conservation. 2009;18:577–603. doi: 10.1007/s10531-008-9526-x. [DOI] [Google Scholar]
  • Costa et al. (2018).Costa END, De Souza MFL, Marrocos PCL, Lobão D, Silva DML. Soil organic matter and CO2 fluxes in small tropical watersheds under forest and cacao agroforestry. PLOS ONE. 2018;13(7):e0200550. doi: 10.1371/journal.pone.0200550. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • Costa et al. (2017).Costa END, Souza JC, Pereira MA, Souza WFL, Souza MFL, Silva DML. Influence of hydrological pathways on dissolved organic carbon fluxes in tropical streams. Ecology and Evolution. 2017;1:1–12. doi: 10.1002/ece3.2543. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • Curvelo et al. (2009).Curvelo K, Calasans NA, Lobão DE, Sodré GA, Pereira JM, Marrocos PCL, Barbosa JW, Valle RR. Aporte de nutrientes na serapilheira e na água do solo em cacau-cabruca, floresta secundária e pastagem. Agrotrópica. 2009;21:55–64. [Google Scholar]
  • da Silva et al. (2017).da Silva LALL, Lisboa LK, Siegloch AE, Petrucio MM, Gonçalves Júnior JF. Connecting the litterfall temporal dynamics and processing of coarse particulate organic matter in a tropical stream. Marine and Freshwater Research. 2017;68(7):1260. doi: 10.1071/MF16032. [DOI] [Google Scholar]
  • Davison & Hinkley (1997).Davison AC, Hinkley DV. Bootstrap methods and their application. Cambridge, England: Cambridge University Press; 1997. [Google Scholar]
  • Dawoe, Isaac & Quashie (2010).Dawoe EK, Isaac ME, Quashie ASJ. Litterfall and litter nutrient dynamics under cocoa ecosystems in lowland humid Ghana. Plant and Soil. 2010;330:55–64. doi: 10.1007/s11104-009-0173-0. [DOI] [Google Scholar]
  • Deheuvels et al. (2014).Deheuvels O, Rousseau GX, Quiroga GS, Franco MD, Cerda R, Mendoza SJV, Somarriba E. Biodiversity is affected by changes in management intensity of cocoa-based agroforests. Agroforestry Systems. 2014;88(6):1081–1099. doi: 10.1007/s10457-014-9710-9. [DOI] [Google Scholar]
  • Delong & Brusven (1994).Delong MD, Brusven MA. Allochthonous input of organic matter from different riparian habitat of an agricultural impacted stream. Environmental Management. 1994;18(1):59–71. doi: 10.1007/BF02393750. [DOI] [Google Scholar]
  • Elosegi & Pozo (2005).Elosegi A, Pozo J. Litter input. In: Graça MAS, Bärlocher F, Gessner MO, editors. Methods to Study Litter Decomposition: A Practical Guide. New York, USA: Springer; 2005. pp. 3–11. [Google Scholar]
  • Faria et al. (2007).Faria D, Laps RR, Baumgarten J, Cetra M. Bat and bird assemblages from forests and shade cacao plantations in two contrasting landscapes in the Atlantic Forest of southern Bahia. Brazil Biodiversity and Conservation. 2007;15(2):587–612. doi: 10.1007/s10531-005-2089-1. [DOI] [Google Scholar]
  • Ferreira et al. (2019).Ferreira V, Boyero L, Calvo C, Correa F, Figueroa R, Gonçalves JF, Goyenola G, Graça MA, Hepp LU, Kariuki S, López-Rodríguez A. A Global assessment of the effects of eucalyptus plantations on stream ecosystem functioning. Ecosystems. 2019;22(3):629–642. doi: 10.1007/s10021-018-0292-7. [DOI] [Google Scholar]
  • Fontes et al. (2014).Fontes AG, Gama-Rodrigues AC, Gama-Rodrigues EF, Sales MVS, Costa MG, Machado RCR. Nutrient stocks in litterfall and litter in cocoa agroforests in Brazil. Plant and Soil. 2014;383(1–2):313–335. doi: 10.1007/s11104-014-2175-9. [DOI] [Google Scholar]
  • França et al. (2009).França JS, Gregório RS, D‘Arc de Paula J, Gonçalves Júnior JF, Ferreira FA, Callisto M. Composition and dynamics of allochthonous organic matter inputs and benthic stock in a Brazilian stream. Marine and Freshwater Research. 2009;60(10):990–998. doi: 10.1071/MF08247. [DOI] [Google Scholar]
  • Gama-Rodrigues et al. (2010).Gama-Rodrigues EF, Nair PKR, Nair VD, Gama-Rodrigues AC, Baligar VC, Machado RCR. Carbon storage in soil size fractions under two cacao agroforestry systems in Bahia. Brazil Environmental Management. 2010;45(2):274–283. doi: 10.1007/s00267-009-9420-7. [DOI] [PubMed] [Google Scholar]
  • Gessner, Chauvet & Dobson (1999).Gessner MO, Chauvet E, Dobson M. A perspective on leaf litter breakdown in streams. Oikos. 1999;85(2):377–384. doi: 10.2307/3546505. [DOI] [Google Scholar]
  • Gonçalves Júnior et al. (2014).Gonçalves Júnior JF, Rezende RS, Gregorio RS, Valentin GC. Relationship between dynamics of litterfall and riparian plant species in a tropical stream. Limnologica. 2014;44:40–48. doi: 10.1016/j.limno.2013.05.010. [DOI] [Google Scholar]
  • Johns (1999).Johns ND. Conservation in Brazil’s chocolate forest: the unlikely persistence of the traditional cocoa agroecosystem. Environmental Management. 1999;23(1):31–47. doi: 10.1007/s002679900166. [DOI] [PubMed] [Google Scholar]
  • Lindman et al. (2017).Lindman J, Jonsson M, Burrows RM, Bundschuh M, Sponseller RA. Composition of riparian litter input regulates organic matter decomposition: implications for headwater stream functioning in a managed forest landscape. Ecology and Evolution. 2017;7(4):1068–1077. doi: 10.1002/ece3.2726. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • Lisboa et al. (2015).Lisboa LK, Da Silva ALL, Siegloch AE, Gonçalves Júnior JF, Petrucio MM. Temporal dynamics of allochthonous coarse particulate organic matter in a subtropical Atlantic rainforest Brazilian stream. Marine and Freshwater Research. 2015;66(8):1–7. doi: 10.1071/MF14068. [DOI] [Google Scholar]
  • Martini et al. (2007).Martini AMZ, Fiaschi P, Amorim AM, Paixão JL. A hot-point within a hot-spot: a high diversity site in Brazil’s Atlantic Forest. Biodiversity and Conservation. 2007;16(11):3111–31288. doi: 10.1007/s10531-007-9166-6. [DOI] [Google Scholar]
  • Mello & Gross (2013).Mello DLN, Gross E. Guia de manejo do agroecossistema cacau cabruca. Ilhéus, Brazil: Editora Instituto Cabruca; 2013. [Google Scholar]
  • Naiman, Décamps & Mcclain (2005).Naiman RJ, Décamps H, Mcclain ME. Riparian ecology, conservation, and management of stream side communities. Burlington, USA: Elsevier Academic Press; 2005. [Google Scholar]
  • Nair et al. (1999).Nair PKR, Buresh RJ, Mugendi DN, Latt CR. Nutrient cycling in tropical agroforestry systems: myths and science. In: Buck LE, Lassoie JP, Fernandes ECM, editors. Agroforestry in Sustainable Agricultural Systems: Advances in Agroecology. Boca Raton, FL, USA: CRC Press; 1999. pp. 1–31. [Google Scholar]
  • Neres-Lima et al. (2017).Neres-Lima V, Machado Silva F, Baptista DF, Oliveira RBS, Andrade PM, Oliveira AF, Sasada Sato CY, Silva Junior EF, Feijó Lima R, Angelini R, Camargo PB, Moulton TP. Allochthonous and autochthonous carbon flows in food webs of tropical forest streams. Freshwater Biology. 2017;62(6):1012–1023. doi: 10.1111/fwb.12921. [DOI] [Google Scholar]
  • Piasentin, Saito & Sambuichi (2014).Piasentin FB, Saito CH, Sambuichi RHR. Local tree preferences in the cacao-cabruca system in the southeast of Bahia. Brazil Ambiente & Sociedade. 2014;17(3):55–78. doi: 10.1590/S1414-753X2014000300005. [DOI] [Google Scholar]
  • Pozo et al. (2009).Pozo J, Elosegi A, Díez J, Molinero J. Dinámica y relevancia de la materia organia. In: Elosegi A, Sabater S, editors. Conceptos y técnicas en ecología fluvial. País Vasco, Espanha: Fundación BBVA; 2009. pp. 141–168. [Google Scholar]
  • Rezende et al. (2019).Rezende RS, Medeiros AO, Gonçalves Júnior JF, Feio MJ, Gusmão EP, de Andrade Gomes VÂ, Calor A, Almeida JDSD. Patterns of litter inputs, hyphomycetes and invertebrates in a Brazilian savanna stream: a process of degradative succession. Journal of Tropical Ecology. 2019;35(6):297–307. doi: 10.1017/S0266467419000269. [DOI] [Google Scholar]
  • Rezende et al. (2017a).Rezende RS, Sales MA, Hurbath F, Roque N, Gonçalves Júnior JF, Medeiros AO. Effect of plant richness on the dynamics of coarse particulate organic matter in a Brazilian Savannah stream. Limnologica. 2017a;63:57–64. doi: 10.1016/j.limno.2017.02.002. [DOI] [Google Scholar]
  • Rezende et al. (2017b).Rezende RS, Santos AM, Medeiros AO, Gonçalves Júnior JF. Temporal leaf litter breakdown in a tropical riparian forest with an open canopy. Limnetica. 2017b;36(2):445–459. doi: 10.23818/limn.36.14. [DOI] [Google Scholar]
  • Rezende et al. (2017c).Rezende RS, Correia PR, Gonçaçves JF, Jr, Santos AM. Organic matter dynamics in a savanna transition riparian zone: input of plant reproductive parts increases breakdown process. Journal of Limnology. 2017c;76(3):514–523. doi: 10.4081/jlimnol.2017.1601. [DOI] [Google Scholar]
  • Rolim & Chiarello (2004).Rolim SG, Chiarello AG. Slow death of Atlantic forest trees in cocoa agroforestry in southeastern Brazil. Biodiversity and Conservation. 2004;13(14):2679–2694. doi: 10.1007/s10531-004-2142-5. [DOI] [Google Scholar]
  • Rolim et al. (2017).Rolim SG, Sambuichi RHR, Schroth G, Nascimento MT, Gomes JML. Recovery of forest and phylogenetic structure in abandoned cocoa agroforestry in the Atlantic Forest of Brazil. Environmental Management. 2017;59(3):410–418. doi: 10.1007/s00267-016-0800-5. [DOI] [PubMed] [Google Scholar]
  • Sambuichi (2002).Sambuichi RHR. Fitossociologia e diversidade de espécies arbóreas em cabruca (Mata Atlântica raleada sobre plantação de cacau) na região sul da Bahia. Brasil Acta Botanica Brasiliensis. 2002;16(1):89–101. doi: 10.1590/S0102-33062002000100011. [DOI] [Google Scholar]
  • Sambuichi & Haridasan (2007).Sambuichi RHR, Haridasan M. Recovery of species richness and conservation of native Atlantic Forest trees in the cacao plantations of southern Bahia in Brazil. Biodiversity and Conservation. 2007;16(13):3681–3701. doi: 10.1007/s10531-006-9017-x. [DOI] [Google Scholar]
  • Sambuichi et al. (2012).Sambuichi RH, Vidal DB, Piasentin FB, Jardim JG, Viana TG, Menezes AA, Baligar VC. Cabruca agroforests in southern Bahia, Brazil: tree component, management practices, and tree species conservation. Biodiversity and Conservation. 2012;21(4):1055–1077. doi: 10.1007/s10531-012-0240-3. [DOI] [Google Scholar]
  • Santos et al. (2016).Santos ERM, Araujo QR, Filho AFF, Neto JFA, Cabral LCC. Aspectos geoambientais dos recursos hídricos das propriedades rurais do Projeto Barro Preto, Bahia, Brasil. In: Bruck MME, Lorandi R, editors. Métodos e técnicas de pesquisa em bacias hidrográficas. Ilhéus, Brazil: Editus; 2016. pp. 121–138. [Google Scholar]
  • Schroth et al. (2011).Schroth G, Faria D, Araujo M, Bede L, Van Bael SA, Cassano CR, Oliveira LC, Delabie JH. Conservation in tropical landscape mosaics: the case of the cacao landscape of southern Bahia. Brazil Biodiversity and Conservation. 2011;20(8):1635–1654. doi: 10.1007/s10531-011-0052-x. [DOI] [Google Scholar]
  • Seena et al. (2017).Seena S, Carvalho F, Cássio F, Pascoal C. Does the developmental stage and composition of riparian forest stand affect ecosystem functioning in streams? Science of the Total Environment. 2017;609:1500–1511. doi: 10.1016/j.scitotenv.2017.07.252. [DOI] [PubMed] [Google Scholar]
  • Silva & Moro (2008).Silva BM, Moro FV. Aspectos morfológicos do fruto, da semente e desenvolvimento pós-seminal de faveira (Clitoria fairchildiana R. A. Howard. - Fabaceae) Revista Brasileira de Sementes. 2008;30(3):195–201. doi: 10.1590/S0101-31222008000300026. [DOI] [Google Scholar]
  • Souza et al. (2017).Souza JCS, Pereira MA, Costa END, Silva DML. Nitrogen dynamics in soil solution under different land uses: atlantic forest and cacao-cabruca system. Agroforestry Systems. 2017;92:425–435. doi: 10.1007/s10457-017-0077-6. [DOI] [Google Scholar]
  • Sutfin, Wohl & Dwire (2016).Sutfin NA, Wohl EE, Dwire KA. Banking carbon: a review of organic carbon storage and physical factors influencing retention in floodplains and riparian ecosystems. Earth Surface Processes and Landforms. 2016;41(1):38–60. doi: 10.1002/esp.3857. [DOI] [Google Scholar]
  • Tank et al. (2010).Tank JL, Rosi-Marshall EJ, Griffiths NA, Entrekin SA, Stephen ML. A review of allochthonous organic matter dynamics and metabolism in streams. Journal of the North American Benthological Society. 2010;29(1):118–146. doi: 10.1899/08-170.1. [DOI] [Google Scholar]
  • Taubert et al. (2018).Taubert F, Fischer R, Groeneveld J, Lehmann S, Müller MS, Rödig E, Wiegand T, Huth A. Global patterns of tropical forest fragmentation. Nature. 2018;554(7693):519–522. doi: 10.1038/nature25508. [DOI] [PubMed] [Google Scholar]
  • Tiegs et al. (2019).Tiegs SD, Costello DM, Isken MW, Woodward G, McIntyre PB, Gessner MO, Chauvet E, Griffiths NA, Flecker AS, Acuña V, Albariño R, Allen DC, Alonso C, Andino P, Arango C, Aroviita J, Barbosa MVM, Barmuta LA, Baxter CV, Bell TDC, Bellinger B, Boyero L, Brown LE, Bruder A, Bruesewitz DA, Burdon FJ, Callisto M, Canhoto C, Capps KA, Castillo MM, Clapcott J, Colas F, Colón-Gaud C, Cornut J, Crespo-Pérez V, Cross WF, Culp JM, Danger M, Dangles O, Eyto E, Derry AM, Villanueva VD, Douglas MM, Elosegi A, Encalada AC, Entrekin S, Espinosa R, Ethaiya D, Ferreira V, Ferriol C, Flanagan KM, Fleituch T, Follstad JJF, Barbosa AF, Friberg N, Frost PC, Garcia EA, Lago LG, Soto PEG, Ghate S, Giling DP, Gilmer A, Gonçalves JF, Jr, Gonzales RK, Graça MAS, Grace M, Grossart HP, Guérold F, Gulis V, Hepp LU, Higgins S, Hishi T, Huddart J, Hudson J, Imberger S, Iñiguez-Armijos C, Iwata T, Janetski DJ, Jennings E, Kirkwood AE, Koning AA, Kosten S, Kuehn KA, Laudon H, Leavitt PR, da Silva ALL, Leroux SJ, LeRoy CJ, Lisi PJ, MacKenzie R, Marcarelli AM, Masese FO, McKie BG, Medeiros AO, Meissner K, Miliša M, Mishra S, Miyake Y, Moerke A, Mombrikotb S, Mooney R, Moulton T, Muotka T, Negishi JN, Neres-Lima V, Nieminen ML, Nimptsch J, Ondruch J, Paavola R, Pardo I, Patrick CJ, Peeters ETHM, Pozo J, Pringle C, Prussian A, Quenta E, Quesada A, Reid B, Richardson JS, Rigosi A, Rincón J, Rîşnoveanu G, Robinson CT, Rodríguez-Gallego L, Royer TV, Rusak JA, Santamans AC, Selmeczy GB, Simiyu G, Skuja A, Smykla J, Sridhar KR, Sponseller R, Stoler A, Swan CM, Szlag D, Mello FT. Global patterns and drivers of ecosystem functioning in rivers and riparian zones. Science Advances. 2019;518(1):eaav0486. doi: 10.1126/sciadv.aav0486. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • Tonin et al. (2019).Tonin AM, Boyero L, Bambi P, Pearson RG, Correa-Araneda F, Gonçalves Júnior JF. High within-stream replication is needed to predict litter fluxes in wet-dry tropical streams. Freshwater Biology. 2019;65(4):688–697. doi: 10.1111/fwb.13459. [DOI] [Google Scholar]
  • Tonin et al. (2017).Tonin AM, Gonçalves JF, Bambi P, Couceiro SR, Feitoza LA, Fontana LE, Hamada N, Hepp LU, Lezan-Kowalczuk VG, Leite GF, Lemes-Silva AL. Plant litter dynamics in the forest-stream interface: precipitation is a major control across tropical biomes. Scientific Reports. 2017;7(1):10799. doi: 10.1038/s41598-017-10576-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • Vannote et al. (1980).Vannote RL, Minshall GW, Cummins KW, Sedell JR, Cushing CE. The river continuum concept. Canadian Journal of Fisheries and Aquatic Sciences. 1980;37(1):130–137. doi: 10.1139/f80-017. [DOI] [Google Scholar]
  • Wantzen et al. (2008).Wantzen KM, Yule CM, Mattooko JM, Pringle CM. Organic matter processing in tropical streams. In: Dudgeon D, editor. Tropical Stream Ecology. Amsterdam, Netherlands: Elsevier; 2008. pp. 43–64. [Google Scholar]
  • Webster et al. (1994).Webster J, Covich A, Tank J, Crockett T. Retention of coarse organic particles in streams in the southern Appalachian Mountains. Journal of the North American Benthological Society. 1994;13(2):140–150. doi: 10.2307/1467233. [DOI] [Google Scholar]
  • Wild, Gücker & Brauns (2019).Wild R, Gücker B, Brauns M. Agricultural land use alters temporal dynamics and the composition of organic matter in temperate headwater streams. Freshwater Science. 2019;38(3):566–581. doi: 10.1086/704828. [DOI] [Google Scholar]
  • Winbourne et al. (2018).Winbourne JB, Feng A, Reynolds L, Piotto D, Hastings MG, Porder S. Nitrogen cycling during secondary succession in Atlantic Forest of Bahia. Brazil Scientific Reports. 2018;8(1):1–9. doi: 10.1038/s41598-018-19403-0. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • Wood (2017).Wood SN. Generalized additive models: an introduction with R. Boca Raton, EUA: Chapman & Hall/CRC; 2017. [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Supplemental Information 1. Temporal changes of branch litter inputs (g dry mass m−2d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), abandoned cabruca (AC) and managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-1
Supplemental Information 2. Temporal changes of inputs (g dry mass m−2d−1) and standing stocks (g dry mass m−2) of reproductive plant parts in secondary forest (SF), abandoned cabruca (AC) and managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-2
Supplemental Information 3. Temporal changes of miscellaneous litter inputs (g dry mass m−2d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), an abandoned cabruca (AC) and a managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-3
Supplemental Information 4. Temporal changes of total input (g dry mass m−2d−1) and standing stocks (g dry mass m−2) in secondary forest (SF), abandoned cabruca (AC) and managed cabruca (MC).

Also shown are F and P values as well as the effective degrees of freedom (edf) of GAMM analyses. Continuous lines are the GAMM smoothers and dotted lines indicate 95% confidence limits.

DOI: 10.7717/peerj.13787/supp-4
Supplemental Information 5. Simplified two-way factorial generalized linear mixed-effects analysis to test for effects of time (month), site (SF, AC, and MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on vertical input.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood.

DOI: 10.7717/peerj.13787/supp-5
Supplemental Information 6. Simplified two-way factorial generalized linear mixed-effects analysis to test for effects of time (month), site (SF, AC and MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on terrestrial input.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-6
Supplemental Information 7. Simplified two-way factorial generalized linear mixed-effects analysis to test for the effects of time (month), site (SF, AC and MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on lateral input.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-7
Supplemental Information 8. Simplified two-way factorial generalized linear mixed-effects analysis to test for the effects of time (month), site (SF, AC and, MC) and the interaction of both for leaves, branches, reproductive organs, and miscellaneous litter on standing stocks.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-8
Supplemental Information 9. Simplified two-way factorial generalized linear mixed-effects analysis to test for the effects of time (month), site (SF, AC, MC) and the interaction of both for total litter on terrestrial, vertical, lateral input and standing stock.

AIC = Akaike Information Criterion, BIC = Bayesian Information Criterion, logLik = log likelihood

DOI: 10.7717/peerj.13787/supp-9
Supplemental Information 10. Raw data of litter inputs and stock.

Lateral input (LI), Terrestrial input (TI), Vertical input (VI), Benthic stock (BS)

DOI: 10.7717/peerj.13787/supp-10

Data Availability Statement

The following information was supplied regarding data availability:

The raw data are available in the Supplemental Files.


Articles from PeerJ are provided here courtesy of PeerJ, Inc

RESOURCES