Abstract
Current theories on the conformation and dynamics of unknotted and non-concatenated ring polymers in melt conditions describe each ring as a tree-like double-folded object. While evidence from simulations supports this picture on a single ring level, other works show pairs of rings also thread each other, a feature overlooked in the tree theories. Here we reconcile this dichotomy using Monte Carlo simulations of the ring melts with different bending rigidities. We find that rings are double-folded (more strongly for stiffer rings) on and above the entanglement length scale, while the threadings are localized on smaller scales. The different theories disagree on the details of the tree structure, i.e., the fractal dimension of the backbone of the tree. In the stiffer melts we find an indication of a self-avoiding scaling of the backbone, while more flexible chains do not exhibit such a regime. Moreover, the theories commonly neglect threadings and assign different importance to the impact of the progressive constraint release (tube dilation) on single ring relaxation due to the motion of other rings. Despite that each threading creates only a small opening in the double-folded structure, the threading loops can be numerous and their length can exceed substantially the entanglement scale. We link the threading constraints to the divergence of the relaxation time of a ring, if the tube dilation is hindered by pinning a fraction of other rings in space. Current theories do not predict such divergence and predict faster than measured diffusion of rings, pointing at the relevance of the threading constraints in unpinned systems as well. Revision of the theories with explicit threading constraints might elucidate the validity of the conjectured existence of topological glass.
1. Introduction
Topological constraints emerging from the mutual uncrossability between distinct chain segments dominate the viscoelastic behavior of polymer systems in high-density (melt) conditions.1−3 In this context, of notable interest are those situations where polymers are prepared in a well-defined topological state which remains quenched as polymers diffuse and flow. The simplest example in this respect, and the central topic of the present work, is the case of melts of unknotted and non-concatenated ring polymers. People have been now studying this particular class of polymer solutions for several decades, from the theoretical4−27 as well as the experimental28−33 point of view. Researchers have shown that there exist intriguing conceptual connections between melts of ring polymers and, for instance, chromosomes34,35 and a polymer glass based on the nonlinear topology of the chains.36−39 Yet, because of the particular nature of the problem, many fundamental aspects concerning the physics of ring polymer melts remain poorly understood. At present in fact, physical theories taking exactly into account the constraint by means of suitably topological invariants40−44 remain mathematically hard, if not completely intractable, problems, and their applicability to the dense, many-chain systems is limited. Therefore, the various physical pictures that have been proposed so far4,5,7,15,19 introduce suitable approximations to deal with the constraint which make the problem more affordable but, inevitably, they require a supplement of validation, either from experiments or from numerical simulations.
In a series of landmark papers4,5,7 topological constraints have been approximated, in a mean-field fashion, as a lattice of infinitely thin impenetrable obstacles (see Figure 1); therefore, in avoiding concatenation, rings should protrude through them by double-folding on branched, tree-like conformations. As a consequence,13,18,24 rings form compact shapes whose mean linear size or gyration radius, ⟨Rg⟩, scales with the total contour length of the chain, L, as
1 |
for L larger than the characteristic and material-dependent45 contour length scale, Le, known as the entanglement length, and with dT, the tube diameter of the melt, equivalent to the average mesh distance of the array of topological obstacles.1−3 Many nontrivial predictions of the lattice-tree model—especially single-chain ones as, for instance, the scaling behavior of the rings (eq 1) or their monomer diffusion in the melt—appear in good agreement with brute-force dynamic simulations.6,8−10,16,20,24 Notably, the model has also helped cast a multiscale algorithm14 for generating ring melt conformations at negligible computational cost.
While seemingly accurate, the double-folding/branching model (Figure 1) dismisses22,23 the possibility of ring–ring interpenetrations (or, threadings) which instead—and without violating the non-concatenation constraint!—have physical consequences which become particularly evident when melts are driven out-of-equilibrium, such as in an elongation flow26 or for an induced asymmetry in the local monomer mobilities.39 Moreover, from a broader perspective it remains unclear if the entanglement scales Le and dT (eq 1) are the only relevant ones for melts of rings or if, and up to what extent, they are influenced by the local bending rigidity or Kuhn length3K of the chain. In fact, the value of Le is measured from a linear melt (e.g., by primitive path analysis46) and the length scale is only assumed to be applicable for rings (with the same polymer model) as well, although no direct method to find the value explicitly from the rings is known. Some recent comparisons of crazing in linear and ring glasses suggest47,48 that Le(rings)/Le(linear) ≈ 4, but its role in equilibrium ring melts, as well as its connection to K, has not been thoroughly investigated. All these aspects (double-folding/branching, threadings, entanglement scales) are clearly all related to each other and, yet, how they mutually influence each other remains poorly understood.
In order to address these questions, in this work we perform a systematic investigation of the static and dynamic properties of melts of unknotted and non-concatenated ring polymer conformations obtained in large-scale computer simulations. To this purpose, we present first a modified version of the kinetic Monte Carlo algorithm described in refs (49) and (50) with the purpose of achieving higher values of the polymer Kuhn length K: in doing so, we built on the numerically efficient strategy originally devised in ref (8), which allows us to increase substantially the overlap between polymer chains and to reach feasibly the asymptotic regime eq 1, with relatively moderate chain sizes and, hence, computing times. Then, by employing established tools like the polymer mean gyration radius and shape,51 contour length correlations8 and spatial contacts,52 spanned surface,23 and minimal surface,17,53 alongside the motion of the melt for unperturbed conditions54 or after partial pinning37 of a given fraction of the polymer population, we find out that rings are systematically threading each others via the formation of locally double-folded structures on length scales below the tube diameter dT. Additionally, we show that the threading loops of contour length (which we name shallow threadings) influence significantly many, nonuniversal, properties of the rings.
The paper is structured as follows. In Section 2, we present the notation employed in this work (Section 2.1) and summarize the main predictions for the structure (Section 2.2) and the dynamics (Section 2.3) of melts of rings according to various models with the emphasis on their lattice-tree features. In Section 3, we present and discuss our lattice polymer model and derive the relevant length and time scales of the polymer melts. In Section 4 we present the main results, for the structure (Section 4.1) and the dynamics (Section 4.2) of the rings. In these sections and in the final Section 5 we present and discuss how the tree-like models can be reconciled with the threading features. We also indicate measurements that can help to discriminate between the different models and discuss the common deficiency of all of them. Additional tables and figures are included in the Supporting Information (SI).
2. Ring Polymers in Melt: Theoretical Background
2.1. Entanglement Length and Time Units: Definitions and Notation
Single polymers in melt are made of a linear sequence of monomer units with mean bond length = ⟨b⟩. The total number of monomers of each polymer chain is = N and the polymer contour length is L = N⟨b⟩, while we denote by (≤L) the contour length of a polymer subchain made of n ≡ /⟨b⟩ ≤ N monomers.
Topological constraints (entanglements) affect polymer conformations in the melt when the total contour length of each chain, L, exceeds the characteristic entanglement length scale Le. In general Le is a nontrivial function of the chain bending stiffness or the Kuhn length, K, and the Kuhn segment density, ρK, of the melt (see eq 19 and ref (46)). Then, the mean gyration radius of the polymer chain of contour length L = Le and Kuhn length K,
2 |
is of the order of the cross-sectional diameter of the tube-like region1−3 where the polymer is confined due to the presence of topological constraints. Unless otherwise said, we will express chain contour lengths L in units of the entanglement length Le and, to this purpose, we introduce the compact notations14,23
3 |
4 |
where Ne corresponds to the number of monomers Le/⟨b⟩ of an entanglement length and Z and z are the number of entanglements of the polymer chain and the polymer subchain of contour lengths L and , respectively.55 Accordingly, variables such as the polymer mean-gyration radius ⟨Rg⟩ or the mean-magnetic radius ⟨Rm⟩ (see definitions eqs 20 and 21, respectively) are expressed in units of the tube diameter dT (eq 2).
With respect to polymer dynamics, entanglements affect the motion of the chains on time scales τ larger than a characteristic time τe, known as the entanglement time. τe is defined as in ref (54); namely it corresponds to the time scale where the monomer mean-square displacement g1(τ = τe) (eq 8) is (eq 2). From now on, we adopt τe as our main unit of time.
In Section 3.4, we present a detailed derivation of these quantities for the polymer melts considered in this work.
2.2. Ring Structure
According to the lattice-tree picture,4,5,7,13,14,16 ring conformations in the melt are the result of the balance between compression to avoid linking with other rings and swelling to avoid self-knotting. At the same time, this size competition can be viewed as a balance between double-folding (which minimizes threadings between chains) and random branching (which maximizes polymer entropy). As a consequence, a melt of rings can be mapped14 to an equivalent melt of randomly branching polymers or lattice trees with the same large-scale behavior (see Figure 1). In turn, this mapping can be employed to derive quantitative predictions13,18,24,56 for the scaling exponents describing the characteristic power-law behaviors as a function of L/Le ≡ Z ≳ 1 of the following observables:
- (i)
- (ii)
-
(iii)The mean ring size as a function of the mean path length:
7
Equation 5 means that rings (i.e., the equivalent trees) behave like compact, space-filling objects, while eq 7 expresses the fact that linear paths follow self-avoiding walk statistics.13 Notice also that eq 7 follows directly from eqs 5 and 6; hence νpath = ν/ρ. While the model explains and quantifies the origin of branching and correctly predicts the measured exponent ν in the asymptotic limit, there have been no attempts so far to measure the exponents ρ or νpath in simulations directly (the backbone is not easily “visible” in the conformations). Moreover, the theory is based on scales above Ne and states explicitly16 that the branches might not be double-folded to the monomer scale. This means that the branches can open up to sizes about dT to allow for a branch of another ring to thread through. As we will show in Section 4.1, this is indeed the case.
Another very popular and accurate model is the so-called fractal loopy globule (FLG).19 The model is based on the conjecture that the ring structure arises from a constant (and equal to the Kavassalis–Noolandi number57) overlap parameter (number of segments/loops of a given length sharing a common volume) on all scales above Le in a self-similar manner. As a result, the exponent ν = 1/3 is practically postulated. As such, the ring structure, as loops on loops, is “somewhat analogous” to a randomly branched structure, where the loops of the FLG are viewed as the branches. The authors assert that the loops are not perfectly double-folded, but do not elaborate on the double-folded structure further, except that the number of loops/branches n(r) of size r per ring is n(r) ∼ r–3.
The difference of the FLG and the lattice-tree models, from the structural point of view, is in the branching statistics, manifested in the structure of the mean (primitive) path. [Note that here we use the terms primitive path and tree backbone interchangeably, because they have the same meaning for linear polymers: the shortest end-to-end path of the chain to which its contour can be contracted without crossing other chains. In rings, there are no ends, and therefore such equivalence is, to say the least, not clear. The tree backbone, governing the stretching and branching of the ring is a properly weighted average of all possible path lengths in the tree structure (see ref (16) for details), while the primitive path of the ring is measured in ref (19) with a method analogous, but not identical, to primitive path analysis.46] While in the lattice-tree model the scaling of the size of a segment of the ring with the corresponding primitive path is governed by the exponent νpath on scales above Ne (7), in the FLG the scaling is more complicated because it takes into account “tube dilation”. The tube dilation means freeing of the constraints imposed by the other surrounding segments due to their motion, hence effectively increasing the length scale between constraints, making it time-dependent Ne(t). In the FLG model, if the segment is shorter than Ne(t), its primitive path is just straight; hence the size of the segment scales linearly with the length. If the segment is longer than Ne(t), its size scales with the exponent ν = 1/3 equal to that of the whole ring. The analysis of the primitive paths in ref (19) reports that they do not observe the scaling of the size of the primitive path with its length with the exponent νpath = 3/5. Yet their analysis focuses on a rather flexible system only, and the reported dependence broadly and smoothly crosses over from the exponent 1 to 1/3 (hence visiting all the intermediate exponents). As we show below in Section 4.1, we find an indication of the exponent νpath = 3/5 in the stiff melts.
2.3. Ring Dynamics
As originally pointed out by Obukhov et al.,7 the branched structure induced by the topological obstacles (Figure 1) has direct implications for ring dynamics as well. Here, we limit ourselves to a schematic description of the physics of the process and to recapitulate the main results, without entering into a detailed derivation which, being far from trivial, the interested reader can find explained in detail in refs (7), (16), and (27).
In order to quantify chain dynamics, we introduce54 the monomer mean-square displacement
8 |
and the mean-square displacement of the ring center of mass
9 |
as a function of time τ. Then, three regimes can be identified. For time scales τ ≲ τe and length scales ≲ dT, monomer motion is not affected by entanglements, and we expect the characteristic Rouse-like3 behavior, g1(τ) ∼ τ1/2 and g3(τ) ∼ τ. On intermediate time scales τ ≳ τe, the motion of the ring is dominated by mass transport along the mean path on the tree-like backbone (Figure 1). Finally, for large time scales τ ≳ τr where τr ≈ τeZ2+ρ is the global relaxation time of the chain,16 the whole chain is simply diffusing, i.e., g1(τ) ∼ g3(τ) ∼ τ. The complete expressions for g1 and g3, up to numerical prefactors but including the coefficients for smooth crossovers,16 are given by
10 |
and
11 |
where the exponents ν and ρ appearing here are the same ones introduced in the scaling behaviors of the static quantities; see Section 2.2.
Finally, we introduce the monomer mean-square displacement in the frame of the chain center of mass:
12 |
It is not difficult to see that g2(τ) ≃ g1(τ) – g3(τ) and that where is the chain mean-square gyration radius (see definition, eq 20). We adopt the appearance of a plateau in the large-time behavior of g2 as the signature that our chains have attained complete structural relaxation (see Figure S1 in the SI).
The FLG model19 takes into account the tube dilation, as mentioned in Section 2.1, but otherwise uses self-similar dynamics characteristics for other branched ring conformations as well. Therefore, as shown in ref (19), the predictions for the g1 of both models, the lattice-tree dynamics and the FLG, can be concisely written as
13 |
for times τe ≤ τ ≤ τr. The parameter θ governs the tube dilation: θ = 0 means no tube dilation as in the lattice-tree model, while θ = 1 means full tube dilation as in the FLG model. Note that in FLG, because of the full tube dilation the exponent νpath does not impact the dynamics. The exponents are 0.26 for the lattice-tree model and about 0.29 for FLG.
Interestingly both the FLG and the annealed lattice-tree model are very close in the predictions of the scaling of the monomer mean-squared displacements and other dynamical quantities,19 apart from the scaling of the diffusion coefficient with N. This is computed as D ∼ R2/τr, where the relaxation time τr involving the tube dilation can be written as
14 |
which gives
15 |
Although the exponent is difficult to measure accurately in simulations due to a need of very long runs, the theories underestimate the exponent obtained from the simulations10,19 as well as that from the experiments33 by 0.67 and 0.45 for the FLG and the lattice-tree model, respectively. As we show below in Section 4.2, the source of the discrepancy can be caused by the threadings.
3. Polymer Model and Numerical Methods
3.1. Melts of Rings: The Kinetic Monte Carlo Algorithm
We model classical solutions of ring polymers of variable Kuhn length K and with excluded volume interactions by adapting the kinetic Monte Carlo (kMC) algorithm for elastic lattice polymers on the three-dimensional face-centered-cubic (fcc) lattice introduced originally in refs (49) and (50) and employed later in several studies on polymer melts.23,58,59 In the following we provide the main features of the model, while we refer the reader to the mentioned literature for more details.
In the model, any two consecutive monomers along the chain sit either on nearest-neighbor lattice sites or on the same lattice site (with no more than two consecutive monomers occupying the same lattice site), while nonconsecutive monomers are never allowed to occupy the same lattice site due to excluded volume. By adopting the lattice distance a between fcc nearest-neighbor sites as our unit distance, the bond length b between nearest-neighbor monomers fluctuates between a and 0 (the latter case corresponding to a unit of stored length): for an average bond length = ⟨b⟩, a polymer chain with N bonds has then a total contour length L = N⟨b⟩ < Na. Thanks to this numerical “trick”, polymers are made effectively elastic.49
Ring polymers in the melt are asymptotically compact (eq 1), yet reaching this regime requires the simulation of very large rings, which, in turn, may imply prohibitively long8,9,14 equilibration times. In order to overcome this limitation and, yet, still achieve substantial overlap between the different polymer chains for moderate chain lengths and, hence, feasible simulation times, we adopt the efficient strategy described in ref (8) and consider polymer chains which are locally stiff, namely, polymers whose Kuhn length3K is significantly larger than the mean bond length ⟨b⟩. To this purpose, we have complemented the chain Hamiltonian by introducing the bending energy term:
16 |
where κbend represents the bending stiffness which determines K (see Section 3.4), and is the oriented bond vector between monomers i and i + 1 having spatial coordinates and . [For ring polymers, it is implicitly assumed the periodic boundary condition along the chain N + 1 ≡ 1.] Importantly, since bond vectors are obviously ill-defined when two monomers form a stored length, the sum in eq 16 is restricted to the effective bonds of the chains. By increasing κbend, the energy term eq 16 makes polymers stiffer.
Then, the dynamic evolution of the melts proceeds according to the following Metropolis–Hastings-like60 criterion. One monomer is picked at random and displaced toward one of the nearest lattice sites. The move is accepted based on the energy term eq 16 and if, at the same time, both chain connectivity and excluded volume conditions are not violated: in particular, the latter condition is enforced by imposing that the destination lattice site is either empty or, at most, occupied by one and only one of the nearest-neighbor monomers along the chain. In practice, it is useful to make the following conceptual distinction concerning how this move effectively implements classical polymer dynamics.1−3 The selected monomer which is displaced toward an empty or a single-occupation site (or, a Rouse-like move) may, in general, change the local chain curvature and, hence, depend on the bending energy term eq 16. Conversely, a unit of stored length traveling along the chain (or, a reptation-like move) is not affected by the curvature because eq 16 is, again, strictly restricted to the effective bonds of the chains. Overall, as explained in detail in ref (50), the stored length method ensures that the algorithm remains efficient even when it is applied to the equilibration of very dense systems. The specific values for the acceptance rates as a function of the bending rigidity κbend are summarized in Table 1.
Table 1. Values of Physical Parameters Characterizing the Melts of Polymers Studied in This Papera.
κbend | acc. rate | ⟨ cos θ⟩lin | ⟨ cos θ⟩ring | ⟨b⟩/a | lK/a | ρKlK3 | Le/a | Ne | dT/a | τe/τMC(×104) |
---|---|---|---|---|---|---|---|---|---|---|
0 | 0.069 | 0.187 | 0.171 | 0.731 | 1.440 | 2.679 | 58.738 | 80.379 | 3.755 | 15.0 |
1 | 0.048 | 0.476 | 0.447 | 0.696 | 2.194 | 5.920 | 20.708 | 29.764 | 2.752 | 5.2 |
2 | 0.036 | 0.670 | 0.635 | 0.669 | 3.393 | 13.620 | 8.759 | 13.088 | 2.226 | 2.8 |
a is the unit distance of the fcc lattice, and the monomer number per unit volume is ρa3 ≃ 1.77 (Section 3.2). (i) κbend, bending stiffness parameter (eq 16); (ii) acceptance rate of the kMC algorithm; (iii, iv) ⟨cos θ⟩lin/ring, mean value of the cosine of the angle between two consecutive bonds along the linear/ring polymer (eq 16); (v) ⟨b⟩, mean bond length; (vi) K, Kuhn length (eq 18); (vii) , number of Kuhn segments per Kuhn volume;61 (viii) Le, entanglement length (eq 19); (ix) Ne ≡ Le/⟨b⟩, number of bonds per entanglement length; (x) , diameter of the effective tube confining polymer chains in the melt; (xi) τe, entanglement time.
3.2. Melts of Rings: Simulation Details
We have studied bulk properties of dense solutions of M closed (ring) polymer chains made of N monomers or bonds per ring. By construction, rings are unknotted and non-concatenated. We simulate values
with fixed total number of monomers = 40 000 (for computational convenience, the total number of monomers for N = 640 is slightly less). All these systems have been studied for the bending stiffness parameters κbend = 0, 1, 2 (eq 16). In addition, we have also simulated melts with for κbend = 1 and for κbend = 2: once rescaled in terms of the corresponding entanglement units (see Section 3.4 and Table 1), these two setups have the same number of entanglements per chain Z ≈ 8 of N = 640 with κbend = 0.
Bulk conditions are implemented through the enforcement of periodic boundary conditions in a simulation box of total volume . Similarly to previous works,23,50,59 melt conditions correspond to fixing the monomer number per fcc lattice site to (i) for N ≤ 320 and (ii) for N = 640, respectively, since the volume occupied by the fcc lattice site is ,62 the monomer number per unit volume is given by (i) for N ≤ 320, and (ii) for N = 640. Accordingly, we fix for all N’s.
Finally, our typical runs amount to a minimum of 7 × 106 up to a maximum of 3 × 108 kMC time units where one kMC time unit τMC is = NM: these runs are long enough such that the considered polymers have attained proper structural relaxation (see Figure S1 in the SI).
3.3. A Closer Look at the Bending Stiffness
It is worth discussing in more detail the consequences of the energy term, eq 16.
On the fcc lattice, the angle θ between consecutive chain bonds is restricted to the five values 0°, 45°, 90°, 135°, and 180°. Otherwise, for ideal polymers (i.e., in the absence of the excluded volume interaction), the angles θi in eq 16 are obviously not correlated to each other. This implies that the distribution function Pideal(κbend; cos θ) of the variable cos θ follows the simple Boltzmann form:
17 |
where represents the total number of lattice states for two successive bonds with given cos θ and is the normalization factor.
In polymer melts, excluded volume interactions induce an effective long-range coupling between bond vectors and the distribution function Pmelt(κbend; θ) is expected to deviate from eq 17: for instance, one can immediately see that the angle = 180° (i.e., cos θ = −1) is possible for ideal polymers but strictly forbidden in the presence of excluded volume interactions. The distributions Pmelt(κbend; θ) for the different κbend’s and in comparison to Pideal(κbend; θ) are given in Figure 2 (square-solid vs circle-dashed lines, respectively). Corresponding mean values ⟨cos θ⟩ for the different κbend’s and for open linear chains and closed rings are summarized in Table 1: the values for the two chain architectures are very similar, with differences in the range of a few percent.
3.4. Polymer Length and Time Scales
We provide here a detailed derivation of the relevant length and time scales characterizing our polymer melts (they are summarized in Table 1). Since we work at fixed monomer density ρ (see Section 3.2), the values of these parameters depend only on the bending stiffness parameter κbend.
Average Bond Length, ⟨b⟩
We observe that ⟨b⟩ is slightly decreasing with κbend: arguably, this is the consequence of the progressive stiffening of the polymer fiber on the fcc lattice which privileges less kinked conformations through the reduction of the effective total contour length of the chain.
Kuhn Length, K
By modulating the bending constant κbend, we can fine-tune the flexibility of the polymers (eq 16). The latter is quantified in terms of the Kuhn length K, namely, the unit of contour length beyond which the chain orientational order is lost.2,3 For linear chains, K is defined by the relation2,3
18 |
where ⟨R2()⟩ is the mean-square end-to-end distance between any two monomers along the chain at monomer number separation n or contour length separation = n⟨b⟩. In order to determine the Kuhn length of our polymer chains, we have simulated melts of M = 125 linear chains with N = 320 monomers per chain at the same monomer density (Section 3.2) and for κbend = 0, 1, 2; then, after equilibration, we have computed numerically eq 18. As shown in Figure 3 (symbols), the chains become increasingly stiffer with κbend as expected by displaying, in particular, plateau-like regions for large ’s. In analogy to the procedure employed in ref (59), the heights of these plateaus, obtained by best fits to corresponding constants on the common interval ∈ [150, 200] (Figure 3, dashed lines) provide the values of the corresponding K’s which are used in this work (see Table 1).
Entanglement Length, Le, and Tube Diameter, dT
The entanglement length Le marks the crossover from entanglement-free to entanglement-dominated effects in polymer melts. In general Le depends in a nontrivial57,63 manner on the microscopic details of the polymer melt, typically the chain Kuhn length K and the monomer density ρ. By combining packing arguments64 and primitive path analysis,46 Uchida et al.61 showed that Le can be expressed as a function of , the number of Kuhn segments in a Kuhn volume at given Kuhn density :
19 |
where the two power laws account for the two limits of loosely entangled melts (, exponent = 2) and tightly entangled solutions (, exponent = 2/5). By using eq 19, it is a simple exercise to extract Le/K and the corresponding number of monomers per entanglement length, Ne ≡ Le/⟨b⟩. [Strictly speaking, eq 19 was derived for the entanglement length of a melt of linear chains. Yet, recent theoretical work12,14,23 on ring melts has demonstrated that the same Le describes the correct contour length where topological constraints affect ring behavior and chains become manifestly crumpled.] We observe (Table 1) that Ne decreases by approximately 1 order of magnitude by the apt fine-tuning of κbend. This means that rings with the same contour length but stiffer will become increasingly entangled.8 Finally, we use the definition eq 2:
for computing the tube diameters of polymers of different bending stiffnesses. Notice (Table 1) that, by changing chain stiffness, dT moves from smaller to comparable to K, meaning that we are effectively able to explore the mentioned crossover from loosely to tightly entangled melts.
Entanglement Time, τe
The entanglement time τe marks the onset to entanglement-related effects in polymer dynamics. As anticipated in Section 2.1, τe is evaluated numerically as , where g1(τ) is the monomer time mean-square displacement (eq 8) and dT is the tube diameter (eq 2). For consistency with the definitions for Le and dT, notice that g1(τ) has been calculated on the same dynamic simulations of melts of linear chains used for calculating K.
3.5. Computing the Ring Minimal Surface
The minimal surface spanned by a ring polymer was introduced17,53 as a quantitative tool for measuring the “exposed” area that each ring offers to its neighbors. In this section, we limit ourselves to summarize the salient numerical aspects of the procedure used to obtain the minimal surface; the interested reader will find a complete overview on minimal surfaces for melts of rings in the mentioned references and also in ref (22).
The search for the minimal surface of a ring polymer is based on a suitable minimization algorithm which works as the following. Essentially, the algorithm is based on successive iterations of triangulations evolving under surface tension by moving the free vertices: each triangle in the initial triangulation is made of two successive monomer positions and the center of the mass of the ring; then it is refined (by subdividing each edge into two edges, creating therefore four triangles out of one) and the surface area minimized by the surface tension flow with restructuring of the mesh. Finally, the algorithm stops when the relative surface area does not change by more than 0.1% over a few tens of additional steps of the minimization procedure. Similarly to the eye of a needle pierced by a thread, the single minimal surface of a given ring can be pierced or threaded by the other surrounding polymers in the melt: in particular, once the minimal surfaces of the rings in the melt are determined, it is possible to define in a precise and robust manner what amount of the total contour length of any given ring passes through the minimal surface of another ring.
4. Results
4.1. Ring Structure
In order to characterize ring structure, we consider the chain mean-square “gyration” radius,
20 |
where are the monomer coordinates and is the chain center of mass, and the mean-square “magnetic” radius first introduced in ref (23) and defined as
21 |
where, inspired by the analogy to the classical electrodynamics of the magnetic far field generated by a loop carrying a constant electric current,
22 |
is the (oriented) area enclosed by the ring. Both quantities are an expression of the average (square) ring size, yet they have different meaning: in particular, eq 21 was introduced to detect and quantify the presence of open loops inside the ring. Numerical values of and for melts of rings with different flexibilities are summarized in Table S1 in the SI.
Figure 4 shows these quantities, rescaled (filled symbols) by the corresponding tube diameters dT and as a function of the total number of entanglement Z = L/Le; see Section 2.1 for details and Table 1 for specific values of dT and Le. For further comparison, we have also included the results for obtained from Monte Carlo simulations (bond-fluctuation model) of melts of rings by Müller et al.8 (open symbols) and the universal curves (solid gray lines) from the “hierarchical crumpling” method by Schram et al.23 The excellent matching between these old data sets and the present new data validates our methodology: the average ring size covers the full crossover from Gaussian (∼ Z1) to compact (∼ Z2/3) behavior. This is particularly evident for the stiffest rings (κbend = 2) whose reduced flexibility “helps”, in agreement with Müller et al.,8 reaching the asymptotic behavior. The data for the mean-square magnetic radius rescale equally well and, as noticed in ref (23), with the same large-Z behavior . However, a closer look at the ratio (see Figure S2 in the SI) reveals significant, albeit extremely slow ( with γ ≈ 0.07), power-law corrections which were not noticed in the previous study:23 instead, a similar result was already described in ref (8), where, however, the authors employed a different definition for the area spanned by a ring which was based on the 2d projection of the chain onto a random direction.
The universal behaviors of the two quantities and characterize the chain as a whole, yet, in principle, there could be other length scales below Le which produce no effect on these quantities but affect and become visible in others. We look then at the average behavior of the ring minimal surface (hereafter, min S), a concept introduced17,22,53 to quantify the “exposed” area that each ring offers to its neighbors (see Section 3.5 for technical details). Surprisingly, our data (collected in Table S1 in the SI) demonstrate that this is not the case (see Figure 5): in fact ⟨min S⟩ ∼ Z for the different flexibilities, in agreement with previous results17 for off-lattice simulations, but the three data sets—contrary to and (Figure 4)—do not collapse onto each other after rescaling in terms of entanglement units Z and . Notice that this finding—which looks even more surprising given that both and ⟨min S⟩ are in the end two measures of the ring effective area—is robust and independent of the triangulation resolution employed to calculate the minimal surface of the rings (○ symbols vs × symbols in Figure 5). Note also that ⟨min S⟩ is normalized by , which should correct for the different “elementary areas” due to different local structure of the polymer model. [Note also that normalization by the other microscopic length scale, K, would not imply a collapse either; in fact it would make it even worse as K grows with κbend (see Table 1).]
What could be the physical origin of this discrepancy? In an earlier paper22 it was shown that the minimal surface of each ring can be pierced (threaded) a certain number of times by portions of surrounding rings, but that it is necessary to distinguish carefully the contributions from chain contour lengths z = /Le ≲ 1 (shallow threadings) from the others. For each ring piercing the minimal surface of another ring, we define22 the threading contour length as the contour length portion of the ring comprised between the two consecutive penetrations i-th and i + 1-th, which allow us to assign unambiguously to either “side” of the other ring’s minimal surface. Based on , we consider the following observables:
-
1.
The mean number of chain neighbors threaded by a single ring, ⟨nt⟩.
-
2.
The mean relative amount of contour length of a ring on one side of another ring’s minimal surface with respect to the other side:
23 |
where the so-called separation length,17,22
24 |
quantifies the total contour length of one of the two complementary portions (the other has contour length L – Lsep) obtained by the passage of the penetrating ring through the minimal surface of a penetrated ring: i.e., Q = 1 simply means that the penetrating ring is half split by the penetrated surface.
-
3.
The mean number of times any ring penetrates the minimal surface of any other ring, ⟨np⟩.
These different quantities may be computed by taking into account all possible threading segments or by excluding the shallow ones, namely, as said, those whose contour lengths are shorter than the entanglement length Le. Noticeably, in the first case there is no evidence for universal collapse (Figure 6, left-hand panels) in any of these quantities. On the contrary (Figure 6, right-hand panels), universal collapse is observed after removing the contribution of the short threading filaments: this points to the fact that the same shallow threadings are responsible for the lack of universality observed for ⟨min S⟩ (Figure 5). Assuming that each shallow threading contributes to the average ⟨min S⟩, their removal restores universality almost completely (Figure S3 in the SI). To justify the assumption that each threading does not contribute more than about to the minimal surface, we measured the mean distance ⟨d⟩ between two bonds involved in the threading. We find that indeed ⟨d⟩ ≲ dT (see the values, the corresponding distribution functions, as well as the discussion of the cases with more than two piercings in Figure S4 in the SI), which strongly supports the fact that threadings occur on scales below the entanglement scale. We still find some cases when ⟨d⟩ > dT, but these are exponentially rare (see Figure S4 in the SI).
Additionally, restricting the discussion to the universal behaviors, we see that ⟨Q⟩ decreases with Z, i.e., less material enters the minimal surface of a ring. Yet, the mean number of times, ⟨np⟩, any ring penetrates the minimal surface of any other single ring increases: notice that these two apparent contradictory features can be easily reconciled by supposing that while retracting from each other (i.e., decreasing ⟨Q⟩), rings may at the same time pierce each other more frequently by the increased propensity to form branches at the entanglement scale. Overall, this agrees with the results by two of us (J.S., A.R.)22 for off-lattice dynamic simulations of melts of rings. [Notice, however, that in ref (22) we have reported the scaling behavior ⟨Q⟩ ∼ Z–0.31, distinct from the one measured here (⟨Q⟩∼ Z–0.51, see middle right panel in Figure 6). This apparent discrepancy is due to the fact that in ref (22) the mean value ⟨Q⟩ includes the contribution of the shallow threadings: in fact, their removal gives identical results to the ones of the present work (data not shown).]
According to the lattice-tree model (Section 2.2), the contour length of each ring above the entanglement length Le should double-fold along a branched (i.e., tree-like) backbone. We seek now specific evidence of this peculiar organization. As the first of these signatures, we look at the bond-vector correlation function8,14,23
25 |
Contrary to the known exponentially decaying behavior typical of linear polymers (solid lines vs long-dashed lines in Figure 7) c() is manifestly nonmonotonic, showing an anticorrelation well whose minimum becomes more pronounced and locates around z = /Le ≈ 1 with the increasing of the chain stiffness. By using the function for 0 < < Le and for Le < < 2Le as a toy model for an exactly double-folded polymer filament of contour length = 2Le, it is easy to see that c(z = /Le) = (1–3/2z)/(1 – z/2) for 0 < z < 1 and c(z) = −1 for 1 ≤ z < 2, i.e., c() displays an anticorrelation minimum at z = 1 or = Le (short-dashed line in Figure 7). A deep anticorrelation well is particularly visible in short rings (at a given κbend), while in larger rings the effect is smoothed, arguably because thermal fluctuations wash out such strong anticorrelations.
As a second signature, we look at the mean contact probability,52 ⟨pc()⟩, between two monomers at given contour length separation defined as
26 |
where Θ(x) is the usual Heaviside step function and the “contact distance” rc between two monomers is taken equal to one lattice unit, a.
Reducing finite ring size effects by plotting ⟨pc⟩ in terms of the variable24 ζ ≡ z(1 – z/Z), the data from the different rings (see Figure S5 in the SI) form three distinct curves according to their Kuhn length (Figure 8). Notably these curves display the asymptotic power-law behavior ∼ζ–γ with scaling exponent γ close to 1, as reported in the past.9,14,35 At the same time, the stiffer chains with κbend = 2 display a short, yet quite evident, leveling of the contact probability curves around z ≈ 1 (see arrow’s direction), which is clearly compatible with double-folding on the entanglement scale.
However, we show now that the most compelling evidence for double-folding comes from examining the average polymer shape. To this purpose, we introduce the 3 × 3 symmetric gyration tensor whose elements are defined by
27 |
where ri,α with α = x, y, z are the Cartesian components of the spatial position of monomer i: the trace of the tensor , , is equal to , and the three ordered eigenvalues, , quantify the spatial variations of the polymer along the corresponding principal axes, i.e., the instantaneous shape of the chain. Polymers are ellipsoidal on average,51 with mean values (see values in Table S1 in the SI): similarly to (Figure 4), we do expect a scaling curve for each in universal units Z and dT and, for Z ≫ 1, . In general our data (see Figure S6 in the SI) reflect well this trend, except for the smallest mean eigenvalue , which displays systematic deviations from the asymptotic behavior which persist for chain sizes well above the entanglement threshold Z ≈ 1. Interestingly, these deviations are quantitatively consistent with the scaling properties of rings being double-folded on an underlying tree-like structure (Section 2.2): in fact, according to Figure S6 in the SI and for the given mean path length ⟨Ltree⟩ ∼ Zρ (eq 6) of the “supporting” tree, we can write the expressions
28 |
29 |
where the latter is equivalent to assuming local stiff behavior at small contour length separations. Equations 28 and 29 are just equivalent to
30 |
with νpath = 3/5 (eq 7). Our data are well described by eq 30 (see Figure 9) before the crossover to the asymptotic regime, , finally takes place. Notice that the value of νpath agrees well with that of the annealed tree model.13 Note also that here we observe the exponent clearly only for the stiffest system. This might explain why the work19 that analyzed only simulations9 with low stiffness (roughly, between our κbend = 0 and κbend = 1 in terms of Le) reports that they do not see νpath (there measured as the scaling of the chain primitive path with the contour length).
In conclusion, the universal scaling features of the static quantities and the bond correlations reveal double-folded tree-like structure on scales above Le, with indications that the trees are of the annealed tree type.13 Conversely, the nonuniversal features (⟨min S⟩) and threading analysis show that the trees are threaded on scales smaller than the tube diameter dT, hence reconciling the tree picture with that of the threaded conformations. At the same time the “depth” of threadings can be (Figure 6) longer than Le, giving hints on its relevance for the dynamic features. Therefore, in the next section we explore the consequences of the double-folding and threadings on the dynamic properties of the melts.
4.2. Ring Dynamics
As briefly discussed in Section 2.3, the lattice-tree model predicts universal dynamic chain behavior for length scales ≳ dT and time scales ≳ τe. Recent numerical works employing off-lattice molecular dynamics simulations10 and lattice models27 agree well with these predictions. In order to compare the dynamic behavior of the present systems to the results of the lattice-tree model (namely, eqs 10 and 11) with ν = 1/3 (eq 5) and ρ = 5/9 (eq 6), we look then at the monomer mean-square displacement, g1(τ), and the center of mass mean-square displacement, g3(τ), and plot them in properly rescaled length and time units by using the values of the parameters dT and τe reported in Section 3.4. Figure 10 demonstrates the correctness of the rescaling procedure and, in line with previous works,10,27 the good agreement between our simulations (symbols) and the lattice-tree predictions (dashed black lines), in particular for melts of rings with κbend = 2 and Z ≈ 50. Notice though that our data also match well the predictions of the FLG model19 by Ge et al. (dashed red line in the top-right panel), since the two scaling exponents (0.29 vs 0.26, respectively) are within 10% of each other and, hence, beyond the present accuracy of our data.
We conclude now the paper by investigating the implications of threading and double-folding for ring dynamics. While slightly off-topic with respect to the main body of this work, we think nonetheless that the results we are going to discuss represent a valid complement to it.
The formation of topological links via threadings has been held responsible of the unique rheological properties of melts of rings as, for instance, the unusually strong extension-rate thickening of the viscosity in extensional flows.26 Notably, it was conjectured36 that inter-ring threadings should form a network of topological obstacles which, by percolating through the entire melt, should sensibly slow down the relaxation of the system, not dissimilar from what happens in those materials undergoing the glass transition. While direct proof of this topological glass is currently missing, recently Michieletto and others37,38 gave indirect evidence of this through the following numerical experiment: they froze (pinned) a certain fraction fp of rings in the melt and reported that the dynamics of the remaining ones is considerably reduced if not frozen at all. In corresponding melts of linear chains this effect is not seen, so they attributed the observed slowing down to the presence of threadings present in rings but absent in linear chains.
In the numerical experiments discussed here, while double-folding is “enhanced” (Section 4.1) by the chain local stiffness, long threadings, with Lt > Le, which should be the ones affecting the dynamics of the system, are universal. At this level, it is unclear what the impact of these features is on the dynamics and whether or not they can be distinguished. To get some insight into this question, we have taken inspiration from the mentioned pinning numerical experiments37,38 and performed additional simulations of melts of rings for κbend = 0, 1, 2 with the same number of entanglements Z = 8 (to ensure the same large-scale behavior, see Figure 4) and for ring pinning fractions fp from 0 (i.e., no pinning) to 70%. Then we monitored the mean-square displacement, g3(τ), of the center of mass of the nonpinned rings. As shown in Figure 11, our results are consistent with the proposed picture: more flexible rings (κbend = 0, left panel) which we have interpreted as less double-folded are already completely frozen at fp ≃ 30–40%, while the stiffer (and comparably more double-folded) rings (κbend = 2, right panel) require fp ≃ 60–70%. Importantly, these specific fractions do not seem to depend on the finite size of our systems: dynamic runs with smaller (and, arguably, more finite-size dependent) systems give similar values for the freezing fractions (see Figure S7 in the SI). Finally, we see that this is compatible with a network of percolating topological constraints. To this purpose, we represent the melts as networks where each node corresponds to a ring, and we draw a link between two nodes (i.e., rings) whenever the minimal surface of one of the two rings is pierced by a threading segment of the other ring of contour length Lt > Le (i.e., we neglect the shallow threadings). A picture of these networks is shown in Figure 12: it is seen that, at increasing chain stiffness, the fraction of rings globally connected through threadings sensibly decreases with chain stiffness, from for κbend = 0 to for κbend = 1 and κbend = 2; that is, the network of threadings is percolating less through the stiffer melts. [In principle, these percentages may be affected by finite-size effects due to the limited number of chains of our melts. Nonetheless, our conclusions should be fairly robust.] Notice that this decrease corresponds roughly to the fractional amount of rings which need to be additionally pinned in the stiffer systems compared to κbend = 0 in order to get complete freezing (Figure 11). To summarize, flexible melts showing higher propensity to shallow threadings (Figure 6) are more strongly affected by the pinning, pointing to a possible dynamical role of the shallow threadings. In contrast—yet consistent with the pinning fraction—the deep threadings in flexible melts form more connected networks in comparison to the stiffer melts, seemingly suggesting that these alone are the relevant ones in the pinning experiment. The latter result is however surprising, because the deep threadings were found to behave universally for the systems with different stiffness (see Figure 6). We leave this puzzle for future work.
Another view on the results of our pinning experiments shows that the threading constraints are a relevant physical feature that needs to be taken into account to refine models for the ring dynamics. As we mentioned (eq 14), the ring relaxation time with (θ = 1) or without (θ = 0) the tube dilation can be written19 as
Notably, the pinning of a large fraction fp of rings must stop the dilation, because the pinned chains around a mobile ring cannot move, hence impose constraints at all times. The plateau of the g3 that we observe indicates a divergence of the relaxation time, but the FLG as well as the lattice models give a finite prediction for the relaxation time even for inhibited dilation θ = 0. Indeed this is the consequence of neglecting of the threadings. Although the FLG model is built on the full tube dilation in the melt, and therefore, its comparison to the pinning with a limited dilation is problematic, its general formulation (eq 14) allows considering a partial (θ < 1) or no tube dilation. Last but not the least, even though both the lattice-tree and the FLG model underestimate the scaling exponent of the diffusion coefficient with N in comparison to simulations and experiment, a similar underestimation of the scaling exponent of the diffusion coefficient is found in linear melts when compared to a naïve reptation theory.2 The agreement between the theory and the experiment is restored when contour length fluctuations and tube dilation are incorporated. In the rings, the FLG model already includes the tube dilation, yet the prediction of the exponent does not agree with the experiment, which indicates that this is due to the neglect of the threadings. Another explanation of the discrepancy might be the correlation hole effect as indicated in ref (33). Whether this is independent of threadings remains to be elucidated.
5. Discussion and Conclusions
The conformational properties of unknotted and non-concatenated ring polymers in dense melts represent one of the remaining unsolved challenges in polymer physics. In this work, in particular, we have focused on which properties of the rings can be interpreted as signatures of the hypothesis proposed long ago4,5,7 that the polymer fiber double-folds around a branched (lattice-tree) path.
In this respect, global observables like the polymer mean-square gyration radius or the mean-square magnetic radius ( and , Figure 4) are very useful for model validation but otherwise offer little insight.
On the contrary, robust evidence for double-folding comes by exploiting the mean polymer shape (Figure 9). The three principal axes of the polymer are very different in size and, for relatively moderate polymer lengths, they are not at the same “point” of the crossover to asymptotic behavior: in particular, on the studied range where the largest and the smallest axes are not proportional to each other, we have shown that their functional relation is in quantitative agreement with the lattice-tree model. This argument is proposed here for the first time, and it could be useful to revise data relative to other polymer models at its light.
Additional signatures of double-folding on polymer contour lengths z = /Le ≲ 1 become manifested also in the characteristic negative well of the bond-vector orientation correlation function (Figure 7) and in the “softer” slope of the mean contact probability ⟨pc()⟩ (Figure 8) displayed before the asymptotic ∼ –1 power-law behavior effectively takes place. Intriguingly, the reported ⟨pc()⟩ for chromatin fibers measured in conformation capture experiments52 displays the same systematic two-slope crossover65 for ≲ 105 base pairs, i.e., below the estimated34 entanglement length of the chromatin fiber. Notice that, in this respect, the formulated hypothesis that such a “shoulder” in the contact probability derives from active loop-extrusion65 provides a dynamic explanation about how (double-folded) loops can form; otherwise it is not needed per se in order to explain the observed trend in the contact probabilities.
Overall it is worth stressing that these features, that we interpret as manifestations of double-folding, can be made explicit only by introducing some (even if only moderate) bending penalty to the polymer elasticity.
Using minimal surfaces we confirm (Figure 5) that rings may reduce their threadable surfaces via double-folding on the entanglement scale and that the piercings of the minimal surface occur only on the scale below the entanglement tube radius. Yet, the threading loops can be numerous and their length can exceed the entanglement length, but these threading features (Figure 6 and Figure S3) evaluated on length scales larger than one entanglement length behave universally. The universal behavior shows the applicability and the relevance47 of the (linear) entanglement scale to ring polymer melts.
From the point of view of ring dynamics, we have reported that single monomer and global chain motions are in good agreement (Figure 10) with the theory stating that the dominant mode of relaxation is mass transport along the mean path of the underlying tree. Yet the threading constraints can cause divergence of the relaxation time if a fraction of rings is immobilized, a feature not predicted by the theories. Revisiting the theories to incorporate threading constraints explicitly might also help to clarify if the conjecture on the existence of topological glass in equilibrium is valid.
Acknowledgments
J.S. and A.R. acknowledge networking support by the COST Action CA17139 (EUTOPIA). The computational results presented have been achieved in part using the Vienna Scientific Cluster (VSC).
Supporting Information Available
The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.macromol.2c01264.
Table of mean values of structural properties of ring polymers, monomer mean-square displacement g2 in the frame of the ring center of mass, ratios of mean-square gyration radius and mean-square magnetic radius, mean minimal surface after removing the contribution of shallow threadings, distribution functions of distances d between subsequent piercings, mean contact probabilities, mean-square eigenvalues of the gyration tensor, effect of random pinning on smaller melts (PDF)
The authors declare no competing financial interest.
Supplementary Material
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